Juan Pablo Lewinger, PhD

Title(s)Assistant Professor of Clinical Population and Public Health Sciences
SchoolKeck School of Medicine of Usc
AddressSSB 202U 2001 N. Soto Street
Health Sciences Campus
Los Angeles CA 90033
Phone+1 323 442 1932
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    1. A regularized Cox hierarchical model for incorporating annotation information in predictive omic studies. BioData Min. 2024 Oct 24; 17(1):44. Shen D, Lewinger JP, Kawaguchi E. PMID: 39449073.
      View in: PubMed   Mentions:
    2. Characterization of additive gene-environment interactions for colorectal cancer risk. Epidemiology. 2024 Sep 24. Thomas CE, Lin Y, Kim M, Kawaguchi ES, Qu C, Um CY, Lynch BM, Van Guelpen B, Tsilidis K, Carreras-Torres R, van Duijnhoven FJ, Sakoda LC, Campbell PT, Tian Y, Chang-Claude J, Bézieau S, Budiarto A, Palmer JR, Newcomb PA, Casey G, Le Marchand L, Giannakis M, Li CI, Gsur A, Newton C, Obón-Santacana M, Moreno V, Vodicka P, Brenner H, Hoffmeister M, Pellatt AJ, Schoen RE, Dimou N, Murphy N, Gunter MJ, Castellví-Bel S, Figueiredo JC, Chan AT, Song M, Li L, Bishop DT, Gruber SB, Baurley JW, Bien SA, Conti DV, Huyghe JR, Kundaje A, Su YR, Wang J, Keku TO, Woods MO, Berndt SI, Chanock SJ, Tangen CM, Wolk A, Burnett-Hartman A, Wu AH, White E, Devall MA, Díez-Obrero V, Drew DA, Giovannucci E, Hidaka A, Kim AE, Lewinger JP, Morrison J, Ose J, Papadimitriou N, Pardamean B, Peoples AR, Ruiz-Narvaez EA, Shcherbina A, Stern MC, Chen X, Thomas DC, Platz EA, Gauderman WJ, Peters U, Hsu L. PMID: 39316822.
      View in: PubMed   Mentions:    Fields:    
    3. A Regularized Cox Hierarchical Model for Incorporating Annotation Information in Predictive Omic Studies. bioRxiv. 2024 Jul 29. Shen D, Lewinger JP, Kawaguchi E. PMID: 38617211; PMCID: PMC11014500.
      View in: PubMed   Mentions:
    4. Two genome-wide interaction loci modify the association of nonsteroidal anti-inflammatory drugs with colorectal cancer. Sci Adv. 2024 May 31; 10(22):eadk3121. Drew DA, Kim AE, Lin Y, Qu C, Morrison J, Lewinger JP, Kawaguchi E, Wang J, Fu Y, Zemlianskaia N, Díez-Obrero V, Bien SA, Dimou N, Albanes D, Baurley JW, Wu AH, Buchanan DD, Potter JD, Prentice RL, Harlid S, Arndt V, Barry EL, Berndt SI, Bouras E, Brenner H, Budiarto A, Burnett-Hartman A, Campbell PT, Carreras-Torres R, Casey G, Chang-Claude J, Conti DV, Devall MAM, Figueiredo JC, Gruber SB, Gsur A, Gunter MJ, Harrison TA, Hidaka A, Hoffmeister M, Huyghe JR, Jenkins MA, Jordahl KM, Kundaje A, Le Marchand L, Li L, Lynch BM, Murphy N, Nassir R, Newcomb PA, Newton CC, Obón-Santacana M, Ogino S, Ose J, Pai RK, Palmer JR, Papadimitriou N, Pardamean B, Pellatt AJ, Peoples AR, Platz EA, Rennert G, Ruiz-Narvaez E, Sakoda LC, Scacheri PC, Schmit SL, Schoen RE, Stern MC, Su YR, Thomas DC, Tian Y, Tsilidis KK, Ulrich CM, Um CY, van Duijnhoven FJB, Van Guelpen B, White E, Hsu L, Moreno V, Peters U, Chan AT, Gauderman WJ. PMID: 38809988; PMCID: PMC11135391.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    5. Genome-wide interaction study of dietary intake of fibre, fruits, and vegetables with risk of colorectal cancer. EBioMedicine. 2024 Jun; 104:105146. Papadimitriou N, Kim A, Kawaguchi ES, Morrison J, Diez-Obrero V, Albanes D, Berndt SI, Bézieau S, Bien SA, Bishop DT, Bouras E, Brenner H, Buchanan DD, Campbell PT, Carreras-Torres R, Chan AT, Chang-Claude J, Conti DV, Devall MA, Dimou N, Drew DA, Gruber SB, Harrison TA, Hoffmeister M, Huyghe JR, Joshi AD, Keku TO, Kundaje A, Küry S, Le Marchand L, Lewinger JP, Li L, Lynch BM, Moreno V, Newton CC, Obón-Santacana M, Ose J, Pellatt AJ, Peoples AR, Platz EA, Qu C, Rennert G, Ruiz-Narvaez E, Shcherbina A, Stern MC, Su YR, Thomas DC, Thomas CE, Tian Y, Tsilidis KK, Ulrich CM, Um CY, Visvanathan K, Wang J, White E, Woods MO, Schmit SL, Macrae F, Potter JD, Hopper JL, Peters U, Murphy N, Hsu L, Gunter MJ, Gauderman WJ. PMID: 38749303; PMCID: PMC11112268.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    6. Genetic risk impacts the association of menopausal hormone therapy with colorectal cancer risk. Br J Cancer. 2024 Jun; 130(10):1687-1696. Tian Y, Lin Y, Qu C, Arndt V, Baurley JW, Berndt SI, Bien SA, Bishop DT, Brenner H, Buchanan DD, Budiarto A, Campbell PT, Carreras-Torres R, Casey G, Chan AT, Chen R, Chen X, Conti DV, Díez-Obrero V, Dimou N, Drew DA, Figueiredo JC, Gallinger S, Giles GG, Gruber SB, Gunter MJ, Harlid S, Harrison TA, Hidaka A, Hoffmeister M, Huyghe JR, Jenkins MA, Jordahl KM, Joshi AD, Keku TO, Kawaguchi E, Kim AE, Kundaje A, Larsson SC, Marchand LL, Lewinger JP, Li L, Moreno V, Morrison J, Murphy N, Nan H, Nassir R, Newcomb PA, Obón-Santacana M, Ogino S, Ose J, Pardamean B, Pellatt AJ, Peoples AR, Platz EA, Potter JD, Prentice RL, Rennert G, Ruiz-Narvaez EA, Sakoda LC, Schoen RE, Shcherbina A, Stern MC, Su YR, Thibodeau SN, Thomas DC, Tsilidis KK, van Duijnhoven FJB, Van Guelpen B, Visvanathan K, White E, Wolk A, Woods MO, Wu AH, Peters U, Gauderman WJ, Hsu L, Chang-Claude J. PMID: 38561434; PMCID: PMC11091089.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    7. Genome-Wide Gene-Environment Interaction Analyses to Understand the Relationship between Red Meat and Processed Meat Intake and Colorectal Cancer Risk. Cancer Epidemiol Biomarkers Prev. 2024 03 01; 33(3):400-410. Stern MC, Sanchez Mendez J, Kim AE, Obón-Santacana M, Moratalla-Navarro F, Martín V, Moreno V, Lin Y, Bien SA, Qu C, Su YR, White E, Harrison TA, Huyghe JR, Tangen CM, Newcomb PA, Phipps AI, Thomas CE, Kawaguchi ES, Lewinger JP, Morrison JL, Conti DV, Wang J, Thomas DC, Platz EA, Visvanathan K, Keku TO, Newton CC, Um CY, Kundaje A, Shcherbina A, Murphy N, Gunter MJ, Dimou N, Papadimitriou N, Bézieau S, van Duijnhoven FJB, Männistö S, Rennert G, Wolk A, Hoffmeister M, Brenner H, Chang-Claude J, Tian Y, Le Marchand L, Cotterchio M, Tsilidis KK, Bishop DT, Melaku YA, Lynch BM, Buchanan DD, Ulrich CM, Ose J, Peoples AR, Pellatt AJ, Li L, Devall MAM, Campbell PT, Albanes D, Weinstein SJ, Berndt SI, Gruber SB, Ruiz-Narvaez E, Song M, Joshi AD, Drew DA, Petrick JL, Chan AT, Giannakis M, Peters U, Hsu L, Gauderman WJ. PMID: 38112776; PMCID: PMC11343583.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    8. OvaPrint-A Cell-free DNA Methylation Liquid Biopsy for the Risk Assessment of High-grade Serous Ovarian Cancer. Clin Cancer Res. 2023 12 15; 29(24):5196-5206. Buckley DN, Lewinger JP, Gooden G, Spillman M, Neuman M, Guo XM, Tew BY, Miller H, Khetan VU, Shulman LP, Roman L, Salhia B. PMID: 37812492; PMCID: PMC10722131.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    9. Classification of Angle Closure Severity by Hierarchical Cluster Analysis of Ocular Biometrics in the Dark and Light. Transl Vis Sci Technol. 2023 09 01; 12(9):4. Cho A, Lewinger JP, Pardeshi AA, Aroca GA, Torres M, Nongpiur M, Jiang X, McKean-Cowdin R, Varma R, Xu BY. PMID: 37672252; PMCID: PMC10484011.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Genome-wide interaction analysis of folate for colorectal cancer risk. Am J Clin Nutr. 2023 11; 118(5):881-891. Bouras E, Kim AE, Lin Y, Morrison J, Du M, Albanes D, Barry EL, Baurley JW, Berndt SI, Bien SA, Bishop TD, Brenner H, Budiarto A, Burnett-Hartman A, Campbell PT, Carreras-Torres R, Casey G, Cenggoro TW, Chan AT, Chang-Claude J, Conti DV, Cotterchio M, Devall M, Diez-Obrero V, Dimou N, Drew DA, Figueiredo JC, Giles GG, Gruber SB, Gunter MJ, Harrison TA, Hidaka A, Hoffmeister M, Huyghe JR, Joshi AD, Kawaguchi ES, Keku TO, Kundaje A, Le Marchand L, Lewinger JP, Li L, Lynch BM, Mahesworo B, Männistö S, Moreno V, Murphy N, Newcomb PA, Obón-Santacana M, Ose J, Palmer JR, Papadimitriou N, Pardamean B, Pellatt AJ, Peoples AR, Platz EA, Potter JD, Qi L, Qu C, Rennert G, Ruiz-Narvaez E, Sakoda LC, Schmit SL, Shcherbina A, Stern MC, Su YR, Tangen CM, Thomas DC, Tian Y, Um CY, van Duijnhoven FJ, Van Guelpen B, Visvanathan K, Wang J, White E, Wolk A, Woods MO, Ulrich CM, Hsu L, Gauderman WJ, Peters U, Tsilidis KK. PMID: 37640106; PMCID: PMC10636229.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    11. A Genetic Locus within the FMN1/GREM1 Gene Region Interacts with Body Mass Index in Colorectal Cancer Risk. Cancer Res. 2023 08 01; 83(15):2572-2583. Aglago EK, Kim A, Lin Y, Qu C, Evangelou M, Ren Y, Morrison J, Albanes D, Arndt V, Barry EL, Baurley JW, Berndt SI, Bien SA, Bishop DT, Bouras E, Brenner H, Buchanan DD, Budiarto A, Carreras-Torres R, Casey G, Cenggoro TW, Chan AT, Chang-Claude J, Chen X, Conti DV, Devall M, Diez-Obrero V, Dimou N, Drew D, Figueiredo JC, Gallinger S, Giles GG, Gruber SB, Gsur A, Gunter MJ, Hampel H, Harlid S, Hidaka A, Harrison TA, Hoffmeister M, Huyghe JR, Jenkins MA, Jordahl K, Joshi AD, Kawaguchi ES, Keku TO, Kundaje A, Larsson SC, Marchand LL, Lewinger JP, Li L, Lynch BM, Mahesworo B, Mandic M, Obón-Santacana M, Moreno V, Murphy N, Nan H, Nassir R, Newcomb PA, Ogino S, Ose J, Pai RK, Palmer JR, Papadimitriou N, Pardamean B, Peoples AR, Platz EA, Potter JD, Prentice RL, Rennert G, Ruiz-Narvaez E, Sakoda LC, Scacheri PC, Schmit SL, Schoen RE, Shcherbina A, Slattery ML, Stern MC, Su YR, Tangen CM, Thibodeau SN, Thomas DC, Tian Y, Ulrich CM, van Duijnhoven FJ, Van Guelpen B, Visvanathan K, Vodicka P, Wang J, White E, Wolk A, Woods MO, Wu AH, Zemlianskaia N, Hsu L, Gauderman WJ, Peters U, Tsilidis KK, Campbell PT. PMID: 37249599; PMCID: PMC10391330.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    12. A note on p-value multiple-testing adjustment for two-step genome-wide gene-environment interactions scans. medRxiv. 2023 Jun 28. Lewinger JP, Kawaguchi ES, Gauderman WJ. PMID: 37425767; PMCID: PMC10327251.
      View in: PubMed   Mentions:
    13. Probing the diabetes and colorectal cancer relationship using gene - environment interaction analyses. Br J Cancer. 2023 08; 129(3):511-520. Dimou N, Kim AE, Flanagan O, Murphy N, Diez-Obrero V, Shcherbina A, Aglago EK, Bouras E, Campbell PT, Casey G, Gallinger S, Gruber SB, Jenkins MA, Lin Y, Moreno V, Ruiz-Narvaez E, Stern MC, Tian Y, Tsilidis KK, Arndt V, Barry EL, Baurley JW, Berndt SI, Bézieau S, Bien SA, Bishop DT, Brenner H, Budiarto A, Carreras-Torres R, Cenggoro TW, Chan AT, Chang-Claude J, Chanock SJ, Chen X, Conti DV, Dampier CH, Devall M, Drew DA, Figueiredo JC, Giles GG, Gsur A, Harrison TA, Hidaka A, Hoffmeister M, Huyghe JR, Jordahl K, Kawaguchi E, Keku TO, Larsson SC, Le Marchand L, Lewinger JP, Li L, Mahesworo B, Morrison J, Newcomb PA, Newton CC, Obon-Santacana M, Ose J, Pai RK, Palmer JR, Papadimitriou N, Pardamean B, Peoples AR, Pharoah PDP, Platz EA, Potter JD, Rennert G, Scacheri PC, Schoen RE, Su YR, Tangen CM, Thibodeau SN, Thomas DC, Ulrich CM, Um CY, van Duijnhoven FJB, Visvanathan K, Vodicka P, Vodickova L, White E, Wolk A, Woods MO, Qu C, Kundaje A, Hsu L, Gauderman WJ, Gunter MJ, Peters U. PMID: 37365285; PMCID: PMC10403521.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    14. PEACOCK: a machine learning approach to assess the validity of cell type-specific enhancer-gene regulatory relationships. NPJ Syst Biol Appl. 2023 04 03; 9(1):9. Mills C, Marconett CN, Lewinger JP, Mi H. PMID: 37012250; PMCID: PMC10070356.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    15. Genome-wide Interaction Study with Smoking for Colorectal Cancer Risk Identifies Novel Genetic Loci Related to Tumor Suppression, Inflammation, and Immune Response. Cancer Epidemiol Biomarkers Prev. 2023 03 06; 32(3):315-328. Carreras-Torres R, Kim AE, Lin Y, Díez-Obrero V, Bien SA, Qu C, Wang J, Dimou N, Aglago EK, Albanes D, Arndt V, Baurley JW, Berndt SI, Bézieau S, Bishop DT, Bouras E, Brenner H, Budiarto A, Campbell PT, Casey G, Chan AT, Chang-Claude J, Chen X, Conti DV, Dampier CH, Devall MAM, Drew DA, Figueiredo JC, Gallinger S, Giles GG, Gruber SB, Gsur A, Gunter MJ, Harrison TA, Hidaka A, Hoffmeister M, Huyghe JR, Jenkins MA, Jordahl KM, Kawaguchi E, Keku TO, Kundaje A, Le Marchand L, Lewinger JP, Li L, Mahesworo B, Morrison JL, Murphy N, Nan H, Nassir R, Newcomb PA, Obón-Santacana M, Ogino S, Ose J, Pai RK, Palmer JR, Papadimitriou N, Pardamean B, Peoples AR, Pharoah PDP, Platz EA, Rennert G, Ruiz-Narvaez E, Sakoda LC, Scacheri PC, Schmit SL, Schoen RE, Shcherbina A, Slattery ML, Stern MC, Su YR, Tangen CM, Thomas DC, Tian Y, Tsilidis KK, Ulrich CM, van Duijnhoven FJB, Van Guelpen B, Visvanathan K, Vodicka P, Cenggoro TW, Weinstein SJ, White E, Wolk A, Woods MO, Hsu L, Peters U, Moreno V, Gauderman WJ. PMID: 36576985; PMCID: PMC9992283.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    16. Prenatal exposure to tailpipe and non-tailpipe tracers of particulate matter pollution and autism spectrum disorders. Environ Int. 2023 01; 171:107736. Rahman MM, Carter SA, Lin JC, Chow T, Yu X, Martinez MP, Levitt P, Chen Z, Chen JC, Rud D, Lewinger JP, Eckel SP, Schwartz J, Lurmann FW, Kleeman MJ, McConnell R, Xiang AH. PMID: 36623380; PMCID: PMC9943058.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansPHPublic Health
    17. Improved two-step testing of genome-wide gene-environment interactions. Genet Epidemiol. 2023 03; 47(2):152-166. Kawaguchi ES, Kim AE, Lewinger JP, Gauderman WJ. PMID: 36571162; PMCID: PMC9974838.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    18. Associations of Autism Spectrum Disorder with PM2.5 Components: A Comparative Study Using Two Different Exposure Models. Environ Sci Technol. 2023 01 10; 57(1):405-414. Rahman MM, Carter SA, Lin JC, Chow T, Yu X, Martinez MP, Chen Z, Chen JC, Rud D, Lewinger JP, van Donkelaar A, Martin RV, Eckel SP, Schwartz J, Lurmann F, Kleeman MJ, McConnell R, Xiang AH. PMID: 36548990; PMCID: PMC10898516.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansPHPublic Health
    19. Interactions between folate intake and genetic predictors of gene expression levels associated with colorectal cancer risk. Sci Rep. 2022 11 07; 12(1):18852. Haas CB, Su YR, Petersen P, Wang X, Bien SA, Lin Y, Albanes D, Weinstein SJ, Jenkins MA, Figueiredo JC, Newcomb PA, Casey G, Le Marchand L, Campbell PT, Moreno V, Potter JD, Sakoda LC, Slattery ML, Chan AT, Li L, Giles GG, Milne RL, Gruber SB, Rennert G, Woods MO, Gallinger SJ, Berndt S, Hayes RB, Huang WY, Wolk A, White E, Nan H, Nassir R, Lindor NM, Lewinger JP, Kim AE, Conti D, Gauderman WJ, Buchanan DD, Peters U, Hsu L. PMID: 36344807; PMCID: PMC9640550.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    20. Genome-Wide Interaction Analysis of Genetic Variants With Menopausal Hormone Therapy for Colorectal Cancer Risk. J Natl Cancer Inst. 2022 08 08; 114(8):1135-1148. Tian Y, Kim AE, Bien SA, Lin Y, Qu C, Harrison TA, Carreras-Torres R, Díez-Obrero V, Dimou N, Drew DA, Hidaka A, Huyghe JR, Jordahl KM, Morrison J, Murphy N, Obón-Santacana M, Ulrich CM, Ose J, Peoples AR, Ruiz-Narvaez EA, Shcherbina A, Stern MC, Su YR, van Duijnhoven FJB, Arndt V, Baurley JW, Berndt SI, Bishop DT, Brenner H, Buchanan DD, Chan AT, Figueiredo JC, Gallinger S, Gruber SB, Harlid S, Hoffmeister M, Jenkins MA, Joshi AD, Keku TO, Larsson SC, Le Marchand L, Li L, Giles GG, Milne RL, Nan H, Nassir R, Ogino S, Budiarto A, Platz EA, Potter JD, Prentice RL, Rennert G, Sakoda LC, Schoen RE, Slattery ML, Thibodeau SN, Van Guelpen B, Visvanathan K, White E, Wolk A, Woods MO, Wu AH, Campbell PT, Casey G, Conti DV, Gunter MJ, Kundaje A, Lewinger JP, Moreno V, Newcomb PA, Pardamean B, Thomas DC, Tsilidis KK, Peters U, Gauderman WJ, Hsu L, Chang-Claude J. PMID: 35512400; PMCID: PMC9360460.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    21. Beyond GWAS of Colorectal Cancer: Evidence of Interaction with Alcohol Consumption and Putative Causal Variant for the 10q24.2 Region. Cancer Epidemiol Biomarkers Prev. 2022 05 04; 31(5):1077-1089. Jordahl KM, Shcherbina A, Kim AE, Su YR, Lin Y, Wang J, Qu C, Albanes D, Arndt V, Baurley JW, Berndt SI, Bien SA, Bishop DT, Bouras E, Brenner H, Buchanan DD, Budiarto A, Campbell PT, Carreras-Torres R, Casey G, Cenggoro TW, Chan AT, Conti DV, Dampier CH, Devall MA, Díez-Obrero V, Dimou N, Drew DA, Figueiredo JC, Gallinger S, Giles GG, Gruber SB, Gsur A, Gunter MJ, Hampel H, Harlid S, Harrison TA, Hidaka A, Hoffmeister M, Huyghe JR, Jenkins MA, Joshi AD, Keku TO, Larsson SC, Le Marchand L, Lewinger JP, Li L, Mahesworo B, Moreno V, Morrison JL, Murphy N, Nan H, Nassir R, Newcomb PA, Obón-Santacana M, Ogino S, Ose J, Pai RK, Palmer JR, Papadimitriou N, Pardamean B, Peoples AR, Pharoah PDP, Platz EA, Potter JD, Prentice RL, Rennert G, Ruiz-Narvaez E, Sakoda LC, Scacheri PC, Schmit SL, Schoen RE, Slattery ML, Stern MC, Tangen CM, Thibodeau SN, Thomas DC, Tian Y, Tsilidis KK, Ulrich CM, van Duijnhoven FJB, Van Guelpen B, Visvanathan K, Vodicka P, White E, Wolk A, Woods MO, Wu AH, Zemlianskaia N, Chang-Claude J, Gauderman WJ, Hsu L, Kundaje A, Peters U. PMID: 35438744; PMCID: PMC9081195.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    22. A scalable hierarchical lasso for gene-environment interactions. J Comput Graph Stat. 2022; 31(4):1091-1103. Zemlianskaia N, Gauderman WJ, Lewinger JP. PMID: 36793591; PMCID: PMC9928188.
      View in: PubMed   Mentions: 2  
    23. Two-step hypothesis testing to detect gene-environment interactions in a genome-wide scan with a survival endpoint. Stat Med. 2022 04 30; 41(9):1644-1657. Kawaguchi ES, Li G, Lewinger JP, Gauderman WJ. PMID: 35075649; PMCID: PMC9007892.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    24. Hierarchical Ridge Regression for Incorporating Prior Information in Genomic Studies. J Data Sci. 2022 Jan; 20(1):34-50. Kawaguchi ES, Li S, Weaver GM, Lewinger JP. PMID: 36274755; PMCID: PMC9581069.
      View in: PubMed   Mentions: 2  
    25. Effect of UNOS policy change and exception status request on outcomes in patients bridged to heart transplant with an intra-aortic balloon pump. Artif Organs. 2022 May; 46(5):838-849. Wolfson AM, DePasquale EC, Starnes VA, Cunningham M, Baker C, Lee R, Bowdish M, Fong MW, Rahman J, Pandya K, Lewinger JP, Kawaguchi ES, Vaidya AS. PMID: 34748232.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    26. Incorporating prior knowledge into regularized regression. Bioinformatics. 2021 05 01; 37(4):514-521. Zeng C, Thomas DC, Lewinger JP. PMID: 32915960; PMCID: PMC8599719.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    27. PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence. PLoS One. 2020; 15(12):e0243791. Mills C, Muruganujan A, Ebert D, Marconett CN, Lewinger JP, Thomas PD, Mi H. PMID: 33320871; PMCID: PMC7737992.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    28. Differences in Ocular Biometric Measurements among Subtypes of Primary Angle Closure Disease: The Chinese American Eye Study. Ophthalmol Glaucoma. 2021 Mar-Apr; 4(2):224-231. Xu BY, Liang S, Pardeshi AA, Lifton J, Moghimi S, Lewinger JP, Varma R. PMID: 32942063; PMCID: PMC7956120.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    29. Female vulnerability to the effects of smoking on health outcomes in older people. PLoS One. 2020; 15(6):e0234015. Haghani A, Arpawong TE, Kim JK, Lewinger JP, Finch CE, Crimmins E. PMID: 32497122; PMCID: PMC7272024.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    30. Functional informed genome-wide interaction analysis of body mass index, diabetes and colorectal cancer risk. Cancer Med. 2020 05; 9(10):3563-3573. Xia Z, Su YR, Petersen P, Qi L, Kim AE, Figueiredo JC, Lin Y, Nan H, Sakoda LC, Albanes D, Berndt SI, Bézieau S, Bien S, Buchanan DD, Casey G, Chan AT, Conti DV, Drew DA, Gallinger SJ, Gauderman WJ, Giles GG, Gruber SB, Gunter MJ, Hoffmeister M, Jenkins MA, Joshi AD, Le Marchand L, Lewinger JP, Li L, Lindor NM, Moreno V, Murphy N, Nassir R, Newcomb PA, Ogino S, Rennert G, Song M, Wang X, Wolk A, Woods MO, Brenner H, White E, Slattery ML, Giovannucci EL, Chang-Claude J, Pharoah PDP, Hsu L, Campbell PT, Peters U. PMID: 32207560; PMCID: PMC7221445.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    31. Improvements to the Escalation with Overdose Control design and a comparison with the restricted Continual Reassessment Method. Pharm Stat. 2019 11; 18(6):659-670. Ji L, Lewinger JP, Krailo M, Groshen S, Conti DV, Asgharzadeh S, Sposto R. PMID: 31237419; PMCID: PMC8932137.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    32. A Unified Model for the Analysis of Gene-Environment Interaction. Am J Epidemiol. 2019 04 01; 188(4):760-767. Gauderman WJ, Kim A, Conti DV, Morrison J, Thomas DC, Vora H, Lewinger JP. PMID: 30649161; PMCID: PMC6438805.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    33. Preoperative hemoglobin A1c levels and increased risk of adverse limb events in diabetic patients undergoing infrainguinal lower extremity bypass surgery in the Vascular Quality Initiative. J Vasc Surg. 2019 10; 70(4):1225-1234.e1. Singh N, Zeng C, Lewinger JP, Wolfson AM, Shavelle D, Weaver F, Garg PK. PMID: 30852042.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    34. Using Bayes model averaging to leverage both gene main effects and G ×  E interactions to identify genomic regions in genome-wide association studies. Genet Epidemiol. 2019 03; 43(2):150-165. Moss LC, Gauderman WJ, Lewinger JP, Conti DV. PMID: 30456811; PMCID: PMC6375769.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    35. Data integration by multi-tuning parameter elastic net regression. BMC Bioinformatics. 2018 Oct 10; 19(1):369. Liu J, Liang G, Siegmund KD, Lewinger JP. PMID: 30305021; PMCID: PMC6180486.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    36. Correlation between Intraocular Pressure and Angle Configuration Measured by OCT: The Chinese American Eye Study. Ophthalmol Glaucoma. 2018 Nov-Dec; 1(3):158-166. Xu BY, Burkemper B, Lewinger JP, Jiang X, Pardeshi AA, Richter G, Torres M, McKean-Cowdin R, Varma R. PMID: 31025032; PMCID: PMC6475915.
      View in: PubMed   Mentions: 25     Fields:    Translation:Humans
    37. Comparison of devices used in carotid artery stenting: A vascular quality initiative analysis of commonly used carotid stents and embolic protection devices. Catheter Cardiovasc Interv. 2018 10 01; 92(4):743-749. Dhillon AS, Li S, Lewinger JP, Shavelle DM, Matthews RV, Clavijo LC, Weaver FA, Garg P. PMID: 30019819.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    38. Update on the State of the Science for Analytical Methods for Gene-Environment Interactions. Am J Epidemiol. 2017 Oct 01; 186(7):762-770. Gauderman WJ, Mukherjee B, Aschard H, Hsu L, Lewinger JP, Patel CJ, Witte JS, Amos C, Tai CG, Conti D, Torgerson DG, Lee S, Chatterjee N. PMID: 28978192; PMCID: PMC5859988.
      View in: PubMed   Mentions: 55     Fields:    Translation:Humans
    39. Increased risk of mortality after lower extremity bypass in individuals with acute kidney injury in the Vascular Quality Initiative. J Vasc Surg. 2017 Apr; 65(4):1055-1061. Flores E, Lewinger JP, Rowe VL, Woo K, Weaver FA, Shavelle D, Clavijo L, Garg PK. PMID: 27865637.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    40. Erratum to: Hierarchical modeling identifies novel lung cancer susceptibility variants in inflammation pathways among 10,140 cases and 11,012 controls. Hum Genet. 2016 08; 135(8):963. Brenner DR, Brennan P, Boffetta P, Amos CI, Spitz MR, Chen C, Goodman G, Heinrich J, Bickeböller H, Rosenberger A, Risch A, Muley T, McLaughlin JR, Benhamou S, Bouchardy C, Lewinger JP, Witte JS, Chen G, Bull S, Hung RJ. PMID: 27264937.
      View in: PubMed   Mentions:    Fields:    
    41. Novel Gene Expression Signature Predictive of Clinical Recurrence After Radical Prostatectomy in Early Stage Prostate Cancer Patients. Prostate. 2016 10; 76(14):1239-56. Shahabi A, Lewinger JP, Ren J, April C, Sherrod AE, Hacia JG, Daneshmand S, Gill I, Pinski JK, Fan JB, Stern MC. PMID: 27272349; PMCID: PMC9015679.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    42. Detecting Gene-Environment Interactions for a Quantitative Trait in a Genome-Wide Association Study. Genet Epidemiol. 2016 07; 40(5):394-403. Zhang P, Lewinger JP, Conti D, Morrison JL, Gauderman WJ. PMID: 27230133; PMCID: PMC5108681.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    43. Adaptive Set-Based Methods for Association Testing. Genet Epidemiol. 2016 Feb; 40(2):113-22. Su YC, Gauderman WJ, Berhane K, Lewinger JP. PMID: 26707371; PMCID: PMC5560484.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    44. Meat intake, cooking methods, dietary carcinogens, and colorectal cancer risk: findings from the Colorectal Cancer Family Registry. Cancer Med. 2015 Jun; 4(6):936-52. Joshi AD, Kim A, Lewinger JP, Ulrich CM, Potter JD, Cotterchio M, Le Marchand L, Stern MC. PMID: 25846122; PMCID: PMC4472216.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimals
    45. Radical Prostatectomy or External Beam Radiation Therapy vs No Local Therapy for Survival Benefit in Metastatic Prostate Cancer: A SEER-Medicare Analysis. J Urol. 2015 Aug; 194(2):378-85. Satkunasivam R, Kim AE, Desai M, Nguyen MM, Quinn DI, Ballas L, Lewinger JP, Stern MC, Hamilton AS, Aron M, Gill IS. PMID: 25711194; PMCID: PMC4834920.
      View in: PubMed   Mentions: 58     Fields:    Translation:Humans
    46. Hormone metabolism pathway genes and mammographic density change after quitting estrogen and progestin combined hormone therapy in the California Teachers Study. Breast Cancer Res. 2014 Dec 11; 16(6):477. Lee E, Luo J, Su YC, Lewinger JP, Schumacher FR, Van Den Berg D, Wu AH, Bernstein L, Ursin G. PMID: 25499601; PMCID: PMC4318222.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    47. Tobacco smoking, polymorphisms in carcinogen metabolism enzyme genes, and risk of localized and advanced prostate cancer: results from the California Collaborative Prostate Cancer Study. Cancer Med. 2014 Dec; 3(6):1644-55. Shahabi A, Corral R, Catsburg C, Joshi AD, Kim A, Lewinger JP, Koo J, John EM, Ingles SA, Stern MC. PMID: 25355624; PMCID: PMC4298391.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    48. Comprehensive analyses of DNA repair pathways, smoking and bladder cancer risk in Los Angeles and Shanghai. Int J Cancer. 2014 Jul 15; 135(2):335-47. Corral R, Lewinger JP, Van Den Berg D, Joshi AD, Yuan JM, Gago-Dominguez M, Cortessis VK, Pike MC, Conti DV, Thomas DC, Edlund CK, Gao YT, Xiang YB, Zhang W, Su YC, Stern MC. PMID: 24382701; PMCID: PMC4016180.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    49. Genetic variation in the base excision repair pathway, environmental risk factors, and colorectal adenoma risk. PLoS One. 2013; 8(8):e71211. Corral R, Lewinger JP, Joshi AD, Levine AJ, Vandenberg DJ, Haile RW, Stern MC. PMID: 23951112; PMCID: PMC3741365.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    50. Angiogenesis genes, dietary oxidative balance and breast cancer risk and progression: the Breast Cancer Health Disparities Study. Int J Cancer. 2014 Feb 01; 134(3):629-44. Slattery ML, John EM, Torres-Mejia G, Lundgreen A, Lewinger JP, Stern MC, Hines L, Baumgartner KB, Giuliano AR, Wolff RK. PMID: 23832257; PMCID: PMC3830596.
      View in: PubMed   Mentions: 33     Fields:    Translation:Humans
    51. Null association between histology of first and second primary malignancies in men with bilateral testicular germ cell tumors. Am J Epidemiol. 2013 Oct 15; 178(8):1240-5. Thomas JP, Davis-Dao C, Lewinger JP, Siegmund KD, Hamilton AS, Daneshmand S, Skinner EC, Thomas DC, Cortessis VK. PMID: 23928263; PMCID: PMC3792726.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    52. Finding novel genes by testing G × E interactions in a genome-wide association study. Genet Epidemiol. 2013 Sep; 37(6):603-13. Gauderman WJ, Zhang P, Morrison JL, Lewinger JP. PMID: 23873611; PMCID: PMC4348012.
      View in: PubMed   Mentions: 72     Fields:    Translation:Humans
    53. Efficient two-step testing of gene-gene interactions in genome-wide association studies. Genet Epidemiol. 2013 Jul; 37(5):440-51. Lewinger JP, Morrison JL, Thomas DC, Murcray CE, Conti DV, Li D, Gauderman WJ. PMID: 23633124.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    54. Variants in tamoxifen metabolizing genes: a case-control study of contralateral breast cancer risk in the WECARE study. Int J Mol Epidemiol Genet. 2013; 4(1):35-48. Brooks JD, Teraoka SN, Malone KE, Haile RW, Bernstein L, Lynch CF, Mellemkjær L, Duggan DJ, Reiner AS, Concannon P, Schiermeyer K, Lewinger JP, WECARE Study Collaborative Group, Bernstein JL, Figueiredo JC. PMID: 23565321; PMCID: PMC3612453.
      View in: PubMed   Mentions: 6  
    55. Testicular germ cell tumor susceptibility associated with the UCK2 locus on chromosome 1q23. Hum Mol Genet. 2013 Jul 01; 22(13):2748-53. Schumacher FR, Wang Z, Skotheim RI, Koster R, Chung CC, Hildebrandt MA, Kratz CP, Bakken AC, Bishop DT, Cook MB, Erickson RL, Fosså SD, Greene MH, Jacobs KB, Kanetsky PA, Kolonel LN, Loud JT, Korde LA, Le Marchand L, Lewinger JP, Lothe RA, Pike MC, Rahman N, Rubertone MV, Schwartz SM, Siegmund KD, Skinner EC, Turnbull C, Van Den Berg DJ, Wu X, Yeager M, Nathanson KL, Chanock SJ, Cortessis VK, McGlynn KA. PMID: 23462292; PMCID: PMC3674801.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
    56. Genetic admixture and risk of hypertensive disorders of pregnancy among Latinas in Los Angeles County. Epidemiology. 2013 Mar; 24(2):285-94. Shahabi A, Wilson ML, Lewinger JP, Goodwin TM, Stern MC, Ingles SA. PMID: 23344211.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    57. Hormone metabolism genes and mammographic density in Singapore Chinese women. Cancer Epidemiol Biomarkers Prev. 2013 May; 22(5):984-6. Lee E, Su YC, Lewinger JP, Hsu C, Van Den Berg D, Ursin G, Koh WP, Yuan JM, Stram DO, Yu MC, Wu AH. PMID: 23429186; PMCID: PMC4197055.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    58. Cryptorchidism and testicular germ cell tumors: comprehensive meta-analysis reveals that association between these conditions diminished over time and is modified by clinical characteristics. Front Endocrinol (Lausanne). 2012; 3:182. Banks K, Tuazon E, Berhane K, Koh CJ, De Filippo RE, Chang A, Kim SS, Daneshmand S, Davis-Dao C, Lewinger JP, Bernstein L, Cortessis VK. PMID: 23423470; PMCID: PMC3574983.
      View in: PubMed   Mentions: 23     Fields:    
    59. Hierarchical modeling identifies novel lung cancer susceptibility variants in inflammation pathways among 10,140 cases and 11,012 controls. Hum Genet. 2013 05; 132(5):579-89. Brenner DR, Brennan P, Boffetta P, Amos CI, Spitz MR, Chen C, Goodman G, Heinrich J, Bickeböller H, Rosenberger A, Risch A, Muley T, McLaughlin JR, Benhamou S, Bouchardy C, Lewinger JP, Witte JS, Chen G, Bull S, Hung RJ. PMID: 23370545; PMCID: PMC3628758.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    60. Confounding and heterogeneity in genetic association studies with admixed populations. Am J Epidemiol. 2013 Feb 15; 177(4):351-60. Liu J, Lewinger JP, Gilliland FD, Gauderman WJ, Conti DV. PMID: 23334005; PMCID: PMC3626055.
      View in: PubMed   Mentions: 35     Fields:    Translation:Humans
    61. Red meat and poultry, cooking practices, genetic susceptibility and risk of prostate cancer: results from a multiethnic case-control study. Carcinogenesis. 2012 Nov; 33(11):2108-18. Joshi AD, Corral R, Catsburg C, Lewinger JP, Koo J, John EM, Ingles SA, Stern MC. PMID: 22822096; PMCID: PMC3584966.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimals
    62. Polymorphisms in carcinogen metabolism enzymes, fish intake, and risk of prostate cancer. Carcinogenesis. 2012 Jul; 33(7):1352-9. Catsburg C, Joshi AD, Corral R, Lewinger JP, Koo J, John EM, Ingles SA, Stern MC. PMID: 22610071; PMCID: PMC3499053.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansAnimals
    63. Invited commentary: GE-Whiz! Ratcheting gene-environment studies up to the whole genome and the whole exposome. Am J Epidemiol. 2012 Feb 01; 175(3):203-7; discussion 208-9. Thomas DC, Lewinger JP, Murcray CE, Gauderman WJ. PMID: 22199029; PMCID: PMC3261438.
      View in: PubMed   Mentions: 31     Fields:    Translation:Humans
    64. Using extreme phenotype sampling to identify the rare causal variants of quantitative traits in association studies. Genet Epidemiol. 2011 Dec; 35(8):790-9. Li D, Lewinger JP, Gauderman WJ, Murcray CE, Conti D. PMID: 21922541; PMCID: PMC4238184.
      View in: PubMed   Mentions: 71     Fields:    Translation:Humans
    65. The association of polymorphisms in hormone metabolism pathway genes, menopausal hormone therapy, and breast cancer risk: a nested case-control study in the California Teachers Study cohort. Breast Cancer Res. 2011 Apr 01; 13(2):R37. Lee E, Schumacher F, Lewinger JP, Neuhausen SL, Anton-Culver H, Horn-Ross PL, Henderson KD, Ziogas A, Van Den Berg D, Bernstein L, Ursin G. PMID: 21457551; PMCID: PMC3219200.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    66. Genotype-environment interactions in microsatellite stable/microsatellite instability-low colorectal cancer: results from a genome-wide association study. Cancer Epidemiol Biomarkers Prev. 2011 May; 20(5):758-66. Figueiredo JC, Lewinger JP, Song C, Campbell PT, Conti DV, Edlund CK, Duggan DJ, Rangrej J, Lemire M, Hudson T, Zanke B, Cotterchio M, Gallinger S, Jenkins M, Hopper J, Haile R, Newcomb P, Potter J, Baron JA, Le Marchand L, Casey G. PMID: 21357381; PMCID: PMC3089660.
      View in: PubMed   Mentions: 42     Fields:    Translation:Humans
    67. Sample size requirements to detect gene-environment interactions in genome-wide association studies. Genet Epidemiol. 2011 Apr; 35(3):201-10. Murcray CE, Lewinger JP, Conti DV, Thomas DC, Gauderman WJ. PMID: 21308767; PMCID: PMC3076801.
      View in: PubMed   Mentions: 60     Fields:    Translation:Humans
    68. Efficient genome-wide association testing of gene-environment interaction in case-parent trios. Am J Epidemiol. 2010 Jul 01; 172(1):116-22. Gauderman WJ, Thomas DC, Murcray CE, Conti D, Li D, Lewinger JP. PMID: 20543031; PMCID: PMC2915477.
      View in: PubMed   Mentions: 25     Fields:    Translation:Humans
    69. Genes involved with folate uptake and distribution and their association with colorectal cancer risk. Cancer Causes Control. 2010 Apr; 21(4):597-608. Figueiredo JC, Levine AJ, Lee WH, Conti DV, Poynter JN, Campbell PT, Duggan D, Lewinger JP, Martinez ME, Ulrich CM, Newcomb P, Potter J, Limburg PJ, Hopper J, Jenkins MA, Le Marchand L, Baron JA, Haile RW. PMID: 20037791; PMCID: PMC2904058.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    70. Methodological Issues in Multistage Genome-wide Association Studies. Stat Sci. 2009 Nov 01; 24(4):414-429. Thomas DC, Casey G, Conti DV, Haile RW, Lewinger JP, Stram DO. PMID: 20607129; PMCID: PMC2895324.
      View in: PubMed   Mentions: 23  
    71. Detecting gene-environment interactions in genome-wide association data. Genet Epidemiol. 2009; 33 Suppl 1:S68-73. Engelman CD, Baurley JW, Chiu YF, Joubert BR, Lewinger JP, Maenner MJ, Murcray CE, Shi G, Gauderman WJ. PMID: 19924704; PMCID: PMC2924567.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    72. Gene-environment interaction in genome-wide association studies. Am J Epidemiol. 2009 Jan 15; 169(2):219-26. Murcray CE, Lewinger JP, Gauderman WJ. PMID: 19022827; PMCID: PMC2732981.
      View in: PubMed   Mentions: 174     Fields:    Translation:Humans
    73. Hierarchical Bayes prioritization of marker associations from a genome-wide association scan for further investigation. Genet Epidemiol. 2007 Dec; 31(8):871-82. Lewinger JP, Conti DV, Baurley JW, Triche TJ, Thomas DC. PMID: 17654612.
      View in: PubMed   Mentions: 49     Fields:    Translation:Humans
    74. Confidence intervals for multinomial logistic regression in sparse data. Stat Med. 2007 Feb 20; 26(4):903-18. Bull SB, Lewinger JP, Lee SS. PMID: 16489602.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    75. Validity, efficiency, and robustness of a family-based test of association. Genet Epidemiol. 2006 Jan; 30(1):62-76. Lewinger JP, Bull SB. PMID: 16355403.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    76. Comparison of family-based association tests in chromosome regions selected by linkage-based confidence intervals. BMC Genet. 2005 Dec 30; 6 Suppl 1:S62. Lewinger JP, Lee SS, Biernacka J, Wu LY, Shi HS, Bull SB. PMID: 16451675; PMCID: PMC1866720.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    77. Does simultaneous consideration of multiple regions improve disease gene localization? Genet Epidemiol. 2001; 21 Suppl 1:S504-9. Biernacka J, Lewinger JP, Chan V, Bull SB. PMID: 11793727.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
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