Paul Marjoram, PhD

Title(s)Professor of Research Population and Public Health Sciences
SchoolKeck School of Medicine of Usc
Phone+1 323 442 0111
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    Collapse Research 
    Collapse Research Activities and Funding
    Conservation and functional-characterization of tumor methylation sites
    NIH R21CA226106Mar 1, 2019 - Feb 28, 2021
    Role: Principal Investigator
    Multi-scale modeling of genetic variation in a developmental network
    NIH U01GM103804Sep 30, 2013 - Jun 30, 2017
    Role: Co-Principal Investigator
    Drosophila Societies: Agent-Based Analysis of Behavioral Plasticity and Genetics
    NIH R01MH100879Dec 18, 2012 - Nov 30, 2017
    Role: Principal Investigator
    Design and Analysis of 2 Stage GWAS Study Using Next Generation Sequence Technolo
    NIH U01HG005927Sep 28, 2010 - Aug 31, 2013
    Role: Principal Investigator
    Statistical Methods for Relating Sequence Data to Phenotype
    NIH R01MH084678Sep 25, 2008 - Jun 30, 2012
    Role: Principal Investigator
    Computational Methods for Fine Mapping
    NIH R01GM069890Sep 1, 2004 - Aug 31, 2009
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Longitudinal hierarchical Bayesian models of covariate effects on airway and alveolar nitric oxide. Sci Rep. 2023 04 01; 13(1):5346. Weng J, Molshatzki N, Marjoram P, Gauderman WJ, Gilliland FD, Eckel SP. PMID: 37005426; PMCID: PMC10067946.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    2. Functional human genes typically exhibit epigenetic conservation. PLoS One. 2021; 16(9):e0253250. Rud D, Marjoram P, Siegmund K, Shibata D. PMID: 34520456; PMCID: PMC8439480.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    3. Hierarchical Bayesian estimation of covariate effects on airway and alveolar nitric oxide. Sci Rep. 2021 08 25; 11(1):17180. Weng J, Molshatzki N, Marjoram P, Gauderman WJ, Gilliland FD, Eckel SP. PMID: 34433846; PMCID: PMC8387480.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    4. Bayesian parameter estimation for automatic annotation of gene functions using observational data and phylogenetic trees. PLoS Comput Biol. 2021 02; 17(2):e1007948. Vega Yon GG, Thomas DC, Morrison J, Mi H, Thomas PD, Marjoram P. PMID: 33600408; PMCID: PMC7924801.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    5. Genomic diversity and genome-wide association analysis related to yield and fatty acid composition of wild American oil palm. Plant Sci. 2021 Mar; 304:110731. Ithnin M, Vu WT, Shin MG, Suryawanshi V, Sherbina K, Zolkafli SH, Serdari NM, Amiruddin MD, Abdullah N, Mustaffa S, Marjuni M, Nookiah R, Kushairi A, Marjoram P, Nuzhdin SV, Chang PL, Singh R. PMID: 33568284.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    6. iMutSig: a web application to identify the most similar mutational signature using shiny. F1000Res. 2020; 9:586. Yang Z, Pandey P, Marjoram P, Siegmund KD. PMID: 33299548; PMCID: PMC7702159.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    7. Epigenetic Conservation Is a Beacon of Function: An Analysis Using Methcon5 Software for Studying Gene Methylation. JCO Clin Cancer Inform. 2020 02; 4:100-107. Hvitfeldt E, Xia C, Siegmund KD, Shibata D, Marjoram P. PMID: 32078366; PMCID: PMC7049248.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    8. Impact of different fixed flow sampling protocols on flow-independent exhaled nitric oxide parameter estimates using the Bayesian dynamic two-compartment model. Physiol Rep. 2020 01; 8(1):e14336. Muchmore P, Xu S, Marjoram P, Rappaport EB, Weng J, Molshatzki N, Eckel SP. PMID: 31960619; PMCID: PMC6971414.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    9. Mutational signatures in colon cancer. BMC Res Notes. 2019 Dec 03; 12(1):788. Pandey P, Yang Z, Shibata D, Marjoram P, Siegmund KD. PMID: 31796096; PMCID: PMC6889194.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    10. slurmR: A lightweight wrapper for HPC with Slurm. J Open Source Softw. 2019; 4(42). Vega Yon GG, Marjoram P. PMID: 36052293; PMCID: PMC9432860.
      View in: PubMed   Mentions: 2  
    11. HiLDA: a statistical approach to investigate differences in mutational signatures. PeerJ. 2019; 7:e7557. Yang Z, Pandey P, Shibata D, Conti DV, Marjoram P, Siegmund KD. PMID: 31523512; PMCID: PMC6717498.
      View in: PubMed   Mentions: 2     Fields:    
    12. fmcmc: A friendly MCMC framework. J Open Source Softw. 2019; 4(39). Vega Yon GG, Marjoram P. PMID: 35291577; PMCID: PMC8920406.
      View in: PubMed   Mentions: 1  
    13. Bayesian model selection for the Drosophila gap gene network. BMC Bioinformatics. 2019 Jun 13; 20(1):327. Zubair A, Rosen IG, Nuzhdin SV, Marjoram P. PMID: 31195954; PMCID: PMC6567646.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    14. WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants. Genome Biol. 2019 05 28; 20(1):106. Gentzbittel L, Ben C, Mazurier M, Shin MG, Lorenz T, Rickauer M, Marjoram P, Nuzhdin SV, Tatarinova TV. PMID: 31138283; PMCID: PMC6537182.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    15. Threshold response to stochasticity in morphogenesis. PLoS One. 2019; 14(1):e0210088. Courcoubetis G, Ali S, Nuzhdin SV, Marjoram P, Haas S. PMID: 30699125; PMCID: PMC6353092.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    16. Conservation of social effects (Ψ) between two species of Drosophila despite reversal of sexual dimorphism. Ecol Evol. 2017 12; 7(23):10031-10041. Signor SA, Abbasi M, Marjoram P, Nuzhdin SV. PMID: 29238534; PMCID: PMC5723616.
      View in: PubMed   Mentions: 4  
    17. Translating natural genetic variation to gene expression in a computational model of the Drosophila gap gene regulatory network. PLoS One. 2017; 12(9):e0184657. Gursky VV, Kozlov KN, Kulakovskiy IV, Zubair A, Marjoram P, Lawrie DS, Nuzhdin SV, Samsonova MG. PMID: 28898266; PMCID: PMC5595321.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    18. Basic reversal-learning capacity in flies suggests rudiments of complex cognition. PLoS One. 2017; 12(8):e0181749. Foley BR, Marjoram P, Nuzhdin SV. PMID: 28813432; PMCID: PMC5558953.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    19. Sure enough: efficient Bayesian learning and choice. Anim Cogn. 2017 Sep; 20(5):867-880. Foley BR, Marjoram P. PMID: 28669114; PMCID: PMC5709194.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    20. Social effects for locomotion vary between environments in Drosophila melanogaster females. Evolution. 2017 Jul; 71(7):1765-1775. Signor SA, Abbasi M, Marjoram P, Nuzhdin SV. PMID: 28489252.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    21. Early mutation bursts in colorectal tumors. PLoS One. 2017; 12(3):e0172516. Zhao J, Salomon MP, Shibata D, Curtis C, Siegmund K, Marjoram P. PMID: 28257429; PMCID: PMC5336211.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    22. GWASeq: targeted re-sequencing follow up to GWAS. BMC Genomics. 2016 Mar 03; 17:176. Salomon MP, Li WL, Edlund CK, Morrison J, Fortini BK, Win AK, Conti DV, Thomas DC, Duggan D, Buchanan DD, Jenkins MA, Hopper JL, Gallinger S, Le Marchand L, Newcomb PA, Casey G, Marjoram P. PMID: 26940994; PMCID: PMC4776370.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    23. Simulation-based Bayesian Analysis of Complex Data. Summer Comput Simul Conf (2015). 2015 Dec; 47(10):176-183. Marjoram P, Hamblin S, Foley B. PMID: 27840859; PMCID: PMC5102508.
      View in: PubMed   Mentions: 1  
    24. Many private mutations originate from the first few divisions of a human colorectal adenoma. J Pathol. 2015 Nov; 237(3):355-62. Kang H, Salomon MP, Sottoriva A, Zhao J, Toy M, Press MF, Curtis C, Marjoram P, Siegmund K, Shibata D. PMID: 26119426; PMCID: PMC4607608.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    25. Exact likelihood-free Markov chain Monte Carlo for elliptically contoured distributions. Stat Appl Genet Mol Biol. 2015 Aug; 14(4):317-32. Muchmore P, Marjoram P. PMID: 26167984; PMCID: PMC4607478.
      View in: PubMed   Mentions:    Fields:    
    26. al3c: high-performance software for parameter inference using Approximate Bayesian Computation. Bioinformatics. 2015 Nov 01; 31(21):3549-51. Stram AH, Marjoram P, Chen GK. PMID: 26142186; PMCID: PMC4626746.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    27. A Bayesian Approach to Social Structure Uncovers Cryptic Regulation of Group Dynamics in Drosophila melanogaster. Am Nat. 2015 Jun; 185(6):797-808. Foley BR, Saltz JB, Nuzhdin SV, Marjoram P. PMID: 25996864; PMCID: PMC4610401.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    28. A Big Bang model of human colorectal tumor growth. Nat Genet. 2015 Mar; 47(3):209-16. Sottoriva A, Kang H, Ma Z, Graham TA, Salomon MP, Zhao J, Marjoram P, Siegmund K, Press MF, Shibata D, Curtis C. PMID: 25665006; PMCID: PMC4575589.
      View in: PubMed   Mentions: 525     Fields:    Translation:Humans
    29. Native American ancestry is associated with severe diabetic retinopathy in Latinos. Invest Ophthalmol Vis Sci. 2014 Aug 21; 55(9):6041-5. Gao X, Gauderman WJ, Marjoram P, Torres M, Chen YD, Taylor KD, Rotter JI, Varma R. PMID: 25146985; PMCID: PMC4176415.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    30. Ancestral inference in tumors: how much can we know? J Theor Biol. 2014 Oct 21; 359:136-45. Zhao J, Siegmund KD, Shibata D, Marjoram P. PMID: 24907673; PMCID: PMC4138290.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    31. Post-GWAS: where next? More samples, more SNPs or more biology? Heredity (Edinb). 2014 Jan; 112(1):79-88. Marjoram P, Zubair A, Nuzhdin SV. PMID: 23759726; PMCID: PMC3860164.
      View in: PubMed   Mentions: 29     Fields:    Translation:Humans
    32. Approximation Bayesian Computation. OA Genet. 2013 May 01; 1(3):853. Marjoram P. PMID: 25606346; PMCID: PMC4297650.
      View in: PubMed   Mentions: 3  
    33. A genome-wide association study of central corneal thickness in Latinos. Invest Ophthalmol Vis Sci. 2013 Apr 01; 54(4):2435-43. Gao X, Gauderman WJ, Liu Y, Marjoram P, Torres M, Haritunians T, Kuo JZ, Chen YD, Allingham RR, Hauser MA, Taylor KD, Rotter JI, Varma R. PMID: 23493294; PMCID: PMC3621577.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansCells
    34. A sample selection strategy for next-generation sequencing. Genet Epidemiol. 2012 Nov; 36(7):696-709. Kang CJ, Marjoram P. PMID: 22865643; PMCID: PMC4272568.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    35. A filtering strategy identifies FOXQ1 as a potential effector of lamin A dysfunction. Aging (Albany NY). 2012 Aug; 4(8):567-77. Candelario J, Chen LY, Marjoram P, Reddy S, Comai L. PMID: 22948034; PMCID: PMC3461344.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    36. Genotype Imputation for Latinos Using the HapMap and 1000 Genomes Project Reference Panels. Front Genet. 2012; 3:117. Gao X, Haritunians T, Marjoram P, McKean-Cowdin R, Torres M, Taylor KD, Rotter JI, Gauderman WJ, Varma R. PMID: 22754564; PMCID: PMC3384355.
      View in: PubMed   Mentions: 13  
    37. In this special issue of the Journal of Computational Biology, we take great pleasure in celebrating the landmark birthdays of two leaders in our field. J Comput Biol. 2012 Jun; 19(6):575-6. Chen T, Marjoram P, Sun F, Zhou JX. PMID: 22651813.
      View in: PubMed   Mentions:    Fields:    
    38. Exact coalescent simulation of new haplotype data from existing reference haplotypes. Bioinformatics. 2012 Mar 15; 28(6):838-44. Kang CJ, Marjoram P. PMID: 22257666; PMCID: PMC3307111.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    39. Methods for detecting associations between phenotype and aggregations of rare variants. BMC Proc. 2011 Nov 29; 5 Suppl 9:S51. Yang F, Kang CJ, Marjoram P. PMID: 22373540; PMCID: PMC3287889.
      View in: PubMed   Mentions: 1  
    40. Choice of summary statistic weights in approximate Bayesian computation. Stat Appl Genet Mol Biol. 2011 Sep 27; 10(1). Jung H, Marjoram P. PMID: 23089822; PMCID: PMC3192002.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    41. Inference of population mutation rate and detection of segregating sites from next-generation sequence data. Genetics. 2011 Oct; 189(2):595-605. Kang CJ, Marjoram P. PMID: 21840859; PMCID: PMC3189800.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    42. Modeling measurement error in tumor characterization studies. BMC Bioinformatics. 2011 Jul 13; 12:284. Rakovski C, Weisenberger DJ, Marjoram P, Laird PW, Siegmund KD. PMID: 21752297; PMCID: PMC3213130.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    43. RNA steady-state defects in myotonic dystrophy are linked to nuclear exclusion of SHARP. EMBO Rep. 2011 Jul 01; 12(7):735-42. Dansithong W, Jog SP, Paul S, Mohammadzadeh R, Tring S, Kwok Y, Fry RC, Marjoram P, Comai L, Reddy S. PMID: 21637295; PMCID: PMC3128970.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    44. High DNA methylation pattern intratumoral diversity implies weak selection in many human colorectal cancers. PLoS One. 2011; 6(6):e21657. Siegmund KD, Marjoram P, Tavaré S, Shibata D. PMID: 21738754; PMCID: PMC3125304.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    45. Genetic variation in Native Americans, inferred from Latino SNP and resequencing data. Mol Biol Evol. 2011 Aug; 28(8):2231-7. Wall JD, Jiang R, Gignoux C, Chen GK, Eng C, Huntsman S, Marjoram P. PMID: 21368315; PMCID: PMC3144384.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    46. The gene expression profile of cardia intestinal metaplasia is similar to that of Barrett's esophagus, not gastric intestinal metaplasia. Dis Esophagus. 2011 Sep; 24(7):516-22. Oh DS, DeMeester SR, Tanaka K, Marjoram P, Kuramochi H, Vallbohmer D, Danenberg K, Chandrasoma PT, DeMeester TR, Hagen JA. PMID: 21309924.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    47. Using DNA methylation patterns to infer tumor ancestry. PLoS One. 2010 Aug 09; 5(8):e12002. Hong YJ, Marjoram P, Shibata D, Siegmund KD. PMID: 20711251; PMCID: PMC2918495.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    48. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 2010 Jun 03; 465(7298):627-31. Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M. PMID: 20336072; PMCID: PMC3023908.
      View in: PubMed   Mentions: 802     Fields:    Translation:Animals
    49. Copy number variation in the Framingham Heart Study. BMC Proc. 2009 Dec 15; 3 Suppl 7:S133. Shtir C, Pique-Regi R, Siegmund K, Morrison J, Schumacher F, Marjoram P. PMID: 20018000; PMCID: PMC2795907.
      View in: PubMed   Mentions: 4  
    50. Variation in genetic admixture and population structure among Latinos: the Los Angeles Latino eye study (LALES). BMC Genet. 2009 Nov 10; 10:71. Shtir CJ, Marjoram P, Azen S, Conti DV, Le Marchand L, Haiman CA, Varma R. PMID: 19903357; PMCID: PMC3087512.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    51. Critical role of nuclear calcium/calmodulin-dependent protein kinase IIdeltaB in cardiomyocyte survival in cardiomyopathy. J Biol Chem. 2009 Sep 11; 284(37):24857-68. Little GH, Saw A, Bai Y, Dow J, Marjoram P, Simkhovich B, Leeka J, Kedes L, Kloner RA, Poizat C. PMID: 19602725; PMCID: PMC2757189.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    52. Many colorectal cancers are "flat" clonal expansions. Cell Cycle. 2009 Jul 15; 8(14):2187-93. Siegmund KD, Marjoram P, Tavaré S, Shibata D. PMID: 19556889; PMCID: PMC4145878.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    53. Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers. Proc Natl Acad Sci U S A. 2009 Mar 24; 106(12):4828-33. Siegmund KD, Marjoram P, Woo YJ, Tavaré S, Shibata D. PMID: 19261858; PMCID: PMC2651202.
      View in: PubMed   Mentions: 81     Fields:    Translation:HumansCells
    54. Fast and flexible simulation of DNA sequence data. Genome Res. 2009 Jan; 19(1):136-42. Chen GK, Marjoram P, Wall JD. PMID: 19029539; PMCID: PMC2612967.
      View in: PubMed   Mentions: 194     Fields:    Translation:Humans
    55. Population genetic inference from resequencing data. Genetics. 2009 Jan; 181(1):187-97. Jiang R, Tavaré S, Marjoram P. PMID: 18984575; PMCID: PMC2621167.
      View in: PubMed   Mentions: 27     Fields:    Translation:Humans
    56. Approximately sufficient statistics and bayesian computation. Stat Appl Genet Mol Biol. 2008; 7(1):Article26. Joyce P, Marjoram P. PMID: 18764775.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansAnimals
    57. Modeling DNA methylation in a population of cancer cells. Stat Appl Genet Mol Biol. 2008; 7(1):Article 18. Siegmund KD, Marjoram P, Shibata D. PMID: 18597664.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    58. Exploring population genetic models with recombination using efficient forward-time simulations. Genetics. 2008 Apr; 178(4):2417-27. Padhukasahasram B, Marjoram P, Wall JD, Bustamante CD, Nordborg M. PMID: 18430959; PMCID: PMC2323826.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    59. Cladistic analysis of genotype data-application to GAW15 Problem 3. BMC Proc. 2007; 1 Suppl 1:S125. Jung H, Zhao K, Marjoram P. PMID: 18466467; PMCID: PMC2367549.
      View in: PubMed   Mentions:
    60. Genome-wide association mapping using mixed-models: application to GAW15 Problem 3. BMC Proc. 2007; 1 Suppl 1:S164. Zhao K, Nordborg M, Marjoram P. PMID: 18466510; PMCID: PMC2367554.
      View in: PubMed   Mentions: 2  
    61. Direct and acute cardiotoxicity of ultrafine particles in young adult and old rat hearts. Basic Res Cardiol. 2007 Nov; 102(6):467-75. Simkhovich BZ, Marjoram P, Kleinman MT, Kloner RA. PMID: 17932707.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    62. Towards the molecular characterization of disease: comparison of molecular and histological analysis of esophageal epithelia. J Gastrointest Surg. 2007 Sep; 11(9):1095-104. Vallböhmer D, Marjoram P, Kuramochi H, Shimizu D, Jung H, DeMeester SR, Oh D, Chandrasoma PT, Danenberg KD, DeMeester TR, Danenberg PV, Peters JH. PMID: 17623264.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    63. An Arabidopsis example of association mapping in structured samples. PLoS Genet. 2007 Jan 19; 3(1):e4. Zhao K, Aranzana MJ, Kim S, Lister C, Shindo C, Tang C, Toomajian C, Zheng H, Dean C, Marjoram P, Nordborg M. PMID: 17238287; PMCID: PMC1779303.
      View in: PubMed   Mentions: 288     Fields:    Translation:Animals
    64. Modern computational approaches for analysing molecular genetic variation data. Nat Rev Genet. 2006 Oct; 7(10):759-70. Marjoram P, Tavaré S. PMID: 16983372.
      View in: PubMed   Mentions: 61     Fields:    Translation:Humans
    65. Estimating recombination rates from single-nucleotide polymorphisms using summary statistics. Genetics. 2006 Nov; 174(3):1517-28. Padhukasahasram B, Wall JD, Marjoram P, Nordborg M. PMID: 16980396; PMCID: PMC1667054.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    66. Cluster analysis for DNA methylation profiles having a detection threshold. BMC Bioinformatics. 2006 Jul 26; 7:361. Marjoram P, Chang J, Laird PW, Siegmund KD. PMID: 16872497; PMCID: PMC1555616.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    67. Inferring population parameters from single-feature polymorphism data. Genetics. 2006 Aug; 173(4):2257-67. Jiang R, Marjoram P, Borevitz JO, Tavaré S. PMID: 16702439; PMCID: PMC1569697.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    68. Fast "coalescent" simulation. BMC Genet. 2006 Mar 15; 7:16. Marjoram P, Wall JD. PMID: 16539698; PMCID: PMC1458357.
      View in: PubMed   Mentions: 110     Fields:    Translation:HumansAnimals
    69. Association mapping with single-feature polymorphisms. Genetics. 2006 Jun; 173(2):1125-33. Kim S, Zhao K, Jiang R, Molitor J, Borevitz JO, Nordborg M, Marjoram P. PMID: 16510789; PMCID: PMC1526505.
      View in: PubMed   Mentions: 17     Fields:    Translation:Animals
    70. Fine mapping--19th century style. BMC Genet. 2005 Dec 30; 6 Suppl 1:S63. Molitor J, Zhao K, Marjoram P. PMID: 16451676; PMCID: PMC1866719.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    71. Relative influences of crossing over and gene conversion on the pattern of linkage disequilibrium in Arabidopsis thaliana. Genetics. 2006 Apr; 172(4):2441-8. Plagnol V, Padhukasahasram B, Wall JD, Marjoram P, Nordborg M. PMID: 16299388; PMCID: PMC1456404.
      View in: PubMed   Mentions: 13     Fields:    Translation:Animals
    72. Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. PLoS Genet. 2005 Nov; 1(5):e60. Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, Marjoram P, Nordborg M. PMID: 16292355; PMCID: PMC1283159.
      View in: PubMed   Mentions: 182     Fields:    Translation:Animals
    73. Light causes phosphorylation of nonactivated visual pigments in intact mouse rod photoreceptor cells. J Biol Chem. 2005 Dec 16; 280(50):41184-91. Shi GW, Chen J, Concepcion F, Motamedchaboki K, Marjoram P, Langen R, Chen J. PMID: 16219764.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    74. The molecular signature of normal squamous esophageal epithelium identifies the presence of a field effect and can discriminate between patients with Barrett's esophagus and patients with Barrett's-associated adenocarcinoma. Cancer Epidemiol Biomarkers Prev. 2005 Sep; 14(9):2113-7. Brabender J, Marjoram P, Lord RV, Metzger R, Salonga D, Vallböhmer D, Schäfer H, Danenberg KD, Danenberg PV, Selaru FM, Baldus SE, Hölscher AH, Meltzer SJ, Schneider PM. PMID: 16172218.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    75. Statistical tests of the coalescent model based on the haplotype frequency distribution and the number of segregating sites. Genetics. 2005 Mar; 169(3):1763-77. Innan H, Zhang K, Marjoram P, Tavaré S, Rosenberg NA. PMID: 15654103; PMCID: PMC1449527.
      View in: PubMed   Mentions: 27     Fields:    
    76. Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci. Genetics. 2004 Nov; 168(3):1627-38. Hagenblad J, Tang C, Molitor J, Werner J, Zhao K, Zheng H, Marjoram P, Weigel D, Nordborg M. PMID: 15579712; PMCID: PMC1448803.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    77. Nicotine-responsive genes in cultured embryonic mouse lung buds: interaction of nicotine and superoxide dismutase. Pharmacol Res. 2004 Sep; 50(3):341-50. Wuenschell C, Kunimi M, Castillo C, Marjoram P. PMID: 15225679.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    78. A survey of current Bayesian gene mapping methods. Hum Genomics. 2004 Aug; 1(5):371-4. Molitor J, Marjoram P, Conti D, Thomas D. PMID: 15588497; PMCID: PMC3525098.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    79. Estimating the rate of gene conversion on human chromosome 21. Am J Hum Genet. 2004 Sep; 75(3):386-97. Padhukasahasram B, Marjoram P, Nordborg M. PMID: 15250027; PMCID: PMC1182018.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    80. A multigene expression panel for the molecular diagnosis of Barrett's esophagus and Barrett's adenocarcinoma of the esophagus. Oncogene. 2004 Jun 10; 23(27):4780-8. Brabender J, Marjoram P, Salonga D, Metzger R, Schneider PM, Park JM, Schneider S, Hölscher AH, Yin J, Meltzer SJ, Danenberg KD, Danenberg PV, Lord RV. PMID: 15107828.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    81. Age-related changes of cardiac gene expression following myocardial ischemia/reperfusion. Arch Biochem Biophys. 2003 Dec 15; 420(2):268-78. Simkhovich BZ, Marjoram P, Poizat C, Kedes L, Kloner RA. PMID: 14654066.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    82. Markov chain Monte Carlo without likelihoods. Proc Natl Acad Sci U S A. 2003 Dec 23; 100(26):15324-8. Marjoram P, Molitor J, Plagnol V, Tavare S. PMID: 14663152; PMCID: PMC307566.
      View in: PubMed   Mentions: 215     Fields:    Translation:Humans
    83. Fine-scale mapping of disease genes with multiple mutations via spatial clustering techniques. Am J Hum Genet. 2003 Dec; 73(6):1368-84. Molitor J, Marjoram P, Thomas D. PMID: 14631555; PMCID: PMC1180401.
      View in: PubMed   Mentions: 37     Fields:    Translation:Humans
    84. Application of Bayesian spatial statistical methods to analysis of haplotypes effects and gene mapping. Genet Epidemiol. 2003 Sep; 25(2):95-105. Molitor J, Marjoram P, Thomas D. PMID: 12916018.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    85. Brief episode of ischemia activates protective genetic program in rat heart: a gene chip study. Cardiovasc Res. 2003 Aug 01; 59(2):450-9. Simkhovich BZ, Marjoram P, Poizat C, Kedes L, Kloner RA. PMID: 12909328.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    86. Gene expression profiling--a new approach in the study of myocardial ischemia. Cardiovasc Pathol. 2003 Jul-Aug; 12(4):180-5. Simkhovich BZ, Kloner RA, Poizat C, Marjoram P, Kedes LH. PMID: 12826286.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    87. Bayesian spatial modeling of haplotype associations. Hum Hered. 2003; 56(1-3):32-40. Thomas DC, Stram DO, Conti D, Molitor J, Marjoram P. PMID: 14614236.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    88. On a test of Depaulis and Veuille. Mol Biol Evol. 2001 Jun; 18(6):1132-3; author reply 1136-8. Markovtsova L, Marjoram P, Tavare S. PMID: 11371600.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    89. The effects of rate variation on ancestral inference in the coalescent. Genetics. 2000 Nov; 156(3):1427-36. Markovtsova L, Marjoram P, Tavaré S. PMID: 11063714; PMCID: PMC1461332.
      View in: PubMed   Mentions: 3     Fields:    
    90. The age of a unique event polymorphism. Genetics. 2000 Sep; 156(1):401-9. Markovtsova L, Marjoram P, Tavaré S. PMID: 10978303; PMCID: PMC1461247.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    91. Analysis of germline mutation spectra at the Huntington's disease locus supports a mitotic mutation mechanism. Hum Mol Genet. 1999 Feb; 8(2):173-83. Leeflang EP, Tavaré S, Marjoram P, Neal CO, Srinidhi J, MacFarlane H, MacDonald ME, Gusella JF, de Young M, Wexler NS, Arnheim N. PMID: 9931325.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    92. Ancestral inference from samples of DNA sequences with recombination. J Comput Biol. 1996; 3(4):479-502. Griffiths RC, Marjoram P. PMID: 9018600.
      View in: PubMed   Mentions: 157     Fields:    Translation:Cells
    93. Pairwise comparisons of mitochondrial DNA sequences in subdivided populations and implications for early human evolution. Genetics. 1994 Feb; 136(2):673-83. Marjoram P, Donnelly P. PMID: 8150290; PMCID: PMC1205816.
      View in: PubMed   Mentions: 47     Fields:    Translation:HumansAnimals
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