Marcelo Pablo Coba, PhD, PharmD
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| Title(s) | Associate Professor of Psychiatry & the Behavioral Sciences |
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| School | Keck School of Medicine of Usc |
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| Address | ZNI 427, 1501 San Pablo Street Health Sciences Campus Los Angeles CA 90033
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| Phone | +1 323 442 4345 |
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| vCard | Download vCard |
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Overview
Neurodevelopmental neurodegenerative and psychiatric disease are complex brain disorders, and a multitude of genes have been described to contribute to their pathology with different penetrance. Human genetic studies have discovered many genes associated with disease susceptibility that are usually described as risk factors. For each of these disorders, synaptic proteins have been implicated, in particular those involved in synaptic plasticity and protein complexes associated to the post-synaptic density (PSD). Despite these discoveries, there has been a gap in understanding the underlying mechanisms that contribute to cellular dysfunction in these disorders. Our long-term goal is to determine how candidate risk factors are functionally integrated and how mutations affect their function, not individually, but in developmental signaling networks.
A common regulatory mechanism to ensure that signaling components encounter their intracellular partners in the right place and time is the association of components in protein complexes. These protein interactions commonly use protein scaffolds with specialized protein-interaction modules (protein domains) as a key mechanism to achieve specificity. We consider that common and rare risk factors might affect overlapping signaling networks, integrating protein interactions through different cell types, cellular compartments, and developmental stages.
We use a systems biology approach, combining state of the art proteomic assays to define protein complexes and post-translational modifications, together with mouse genetics, computational biology, synaptic physiology, CRISPR technology, and hiPSC derived cell types from patients with mutations associated to complex brain disorders. This will help us to define network maps that will allow us to stratify patients by their correspondent pathway signatures, their genotype-phenotype relationship, and their genetic background.
Research
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Integrated multi-omic characterizations of the synapse reveal RNA processing factors and ubiquitin ligases associated with neurodevelopmental disorders. Cell Syst. 2025 Apr 16; 16(4):101204.
Mei Y, Gosztyla ML, Tan X, Dozier LE, Wilkinson B, McKetney J, Lee J, Chen M, Tsai D, Kopalle H, Gritsenko MA, Hartel N, Graham NA, Flores I, Gilmore-Hall SK, Xu S, Marquez CA, Liu SN, Fong D, Chen J, Licon K, Hong D, Wright SN, Kreisberg JF, Nott A, Smith RD, Qian WJ, Swaney DL, Iakoucheva LM, Krogan NJ, Patrick GN, Zhou Y, Feng G, Coba MP, Yeo GW, Ideker T. PMID: 40054464; PMCID: PMC12283108.
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PubMed Mentions: Fields:
Translation:
HumansCells
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Mutations in the postsynaptic density signaling hub TNIK disrupt PSD signaling in human models of neurodevelopmental disorders. Front Mol Neurosci. 2024; 17:1359154.
Jiang J, Wilkinson B, Flores I, Hartel N, Mihaylov SR, Clementel VA, Flynn HR, Alkuraya FS, Ultanir S, Graham NA, Coba MP. PMID: 38638602; PMCID: PMC11024424.
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3
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Human cerebellar organoids with functional Purkinje cells. Cell Stem Cell. 2024 01 04; 31(1):39-51.e6.
Atamian A, Birtele M, Hosseini N, Nguyen T, Seth A, Del Dosso A, Paul S, Tedeschi N, Taylor R, Coba MP, Samarasinghe R, Lois C, Quadrato G. PMID: 38181749; PMCID: PMC11417151.
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PubMed Mentions:
49 Fields:
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HumansCells
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Non-synaptic function of the autism spectrum disorder-associated gene SYNGAP1 in cortical neurogenesis. Nat Neurosci. 2023 12; 26(12):2090-2103.
Birtele M, Del Dosso A, Xu T, Nguyen T, Wilkinson B, Hosseini N, Nguyen S, Urenda JP, Knight G, Rojas C, Flores I, Atamian A, Moore R, Sharma R, Pirrotte P, Ashton RS, Huang EJ, Rumbaugh G, Coba MP, Quadrato G. PMID: 37946050; PMCID: PMC11349286.
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PubMed Mentions:
30 Fields:
Translation:
HumansAnimals
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Functional and phosphoproteomic analysis of β-adrenergic receptor signaling at excitatory synapses in the CA1 region of the ventral hippocampus. Sci Rep. 2023 05 09; 13(1):7493.
Jami SA, Wilkinson BJ, Guglietta R, Hartel N, Babiec WE, Graham NA, Coba MP, O'Dell TJ. PMID: 37161045; PMCID: PMC10170123.
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PubMed Mentions:
3 Fields:
Translation:
Cells
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Transcriptional diversity in specific synaptic gene sets discriminates cortical neuronal identity. Biol Direct. 2023 05 09; 18(1):22.
Roig Adam A, Martínez-López JA, van der Spek SJF, SYNGO consortium, Sullivan PF, Smit AB, Verhage M, Hjerling-Leffler J. PMID: 37161421; PMCID: PMC10170694.
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PubMed Mentions:
4 Fields:
Translation:
Animals
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A "multi-omics" analysis of blood-brain barrier and synaptic dysfunction in APOE4 mice. J Exp Med. 2022 11 07; 219(11).
Barisano G, Kisler K, Wilkinson B, Nikolakopoulou AM, Sagare AP, Wang Y, Gilliam W, Huuskonen MT, Hung ST, Ichida JK, Gao F, Coba MP, Zlokovic BV. PMID: 36040482; PMCID: PMC9435921.
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PubMed Mentions:
33 Fields:
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HumansAnimalsCells
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Genome Sequencing Variations in the Octodon degus, an Unconventional Natural Model of Aging and Alzheimer's Disease. Front Aging Neurosci. 2022; 14:894994.
Hurley MJ, Urra C, Garduno BM, Bruno A, Kimbell A, Wilkinson B, Marino-Buslje C, Ezquer M, Ezquer F, Aburto PF, Poulin E, Vasquez RA, Deacon R, Avila A, Altimiras F, Whitney Vanderklish P, Zampieri G, Angione C, Constantino G, Holmes TC, Coba MP, Xu X, Cogram P. PMID: 35860672; PMCID: PMC9291219.
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10
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Endogenous Syngap1 alpha splice forms promote cognitive function and seizure protection. Elife. 2022 04 08; 11.
Kilinc M, Arora V, Creson TK, Rojas C, Le AA, Lauterborn J, Wilkinson B, Hartel N, Graham N, Reich A, Gou G, Araki Y, Bayés À, Coba M, Lynch G, Miller CA, Rumbaugh G. PMID: 35394425; PMCID: PMC9064290.
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PubMed Mentions:
13 Fields:
Translation:
AnimalsCells
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Mapping genomic loci implicates genes and synaptic biology in schizophrenia. Nature. 2022 04; 604(7906):502-508.
Trubetskoy V, Pardiñas AF, Qi T, Panagiotaropoulou G, Awasthi S, Bigdeli TB, Bryois J, Chen CY, Dennison CA, Hall LS, Lam M, Watanabe K, Frei O, Ge T, Harwood JC, Koopmans F, Magnusson S, Richards AL, Sidorenko J, Wu Y, Zeng J, Grove J, Kim M, Li Z, Voloudakis G, Zhang W, Adams M, Agartz I, Atkinson EG, Agerbo E, Al Eissa M, Albus M, Alexander M, Alizadeh BZ, Alptekin K, Als TD, Amin F, Arolt V, Arrojo M, Athanasiu L, Azevedo MH, Bacanu SA, Bass NJ, Begemann M, Belliveau RA, Bene J, Benyamin B, Bergen SE, Blasi G, Bobes J, Bonassi S, Braun A, Bressan RA, Bromet EJ, Bruggeman R, Buckley PF, Buckner RL, Bybjerg-Grauholm J, Cahn W, Cairns MJ, Calkins ME, Carr VJ, Castle D, Catts SV, Chambert KD, Chan RCK, Chaumette B, Cheng W, Cheung EFC, Chong SA, Cohen D, Consoli A, Cordeiro Q, Costas J, Curtis C, Davidson M, Davis KL, de Haan L, Degenhardt F, DeLisi LE, Demontis D, Dickerson F, Dikeos D, Dinan T, Djurovic S, Duan J, Ducci G, Dudbridge F, Eriksson JG, Fañanás L, Faraone SV, Fiorentino A, Forstner A, Frank J, Freimer NB, Fromer M, Frustaci A, Gadelha A, Genovese G, Gershon ES, Giannitelli M, Giegling I, Giusti-Rodríguez P, Godard S, Goldstein JI, González Peñas J, González-Pinto A, Gopal S, Gratten J, Green MF, Greenwood TA, Guillin O, Gülöksüz S, Gur RE, Gur RC, Gutiérrez B, Hahn E, Hakonarson H, Haroutunian V, Hartmann AM, Harvey C, Hayward C, Henskens FA, Herms S, Hoffmann P, Howrigan DP, Ikeda M, Iyegbe C, Joa I, Julià A, Kähler AK, Kam-Thong T, Kamatani Y, Karachanak-Yankova S, Kebir O, Keller MC, Kelly BJ, Khrunin A, Kim SW, Klovins J, Kondratiev N, Konte B, Kraft J, Kubo M, Kucinskas V, Kucinskiene ZA, Kusumawardhani A, Kuzelova-Ptackova H, Landi S, Lazzeroni LC, Lee PH, Legge SE, Lehrer DS, Lencer R, Lerer B, Li M, Lieberman J, Light GA, Limborska S, Liu CM, Lönnqvist J, Loughland CM, Lubinski J, Luykx JJ, Lynham A, Macek M, Mackinnon A, Magnusson PKE, Maher BS, Maier W, Malaspina D, Mallet J, Marder SR, Marsal S, Martin AR, Martorell L, Mattheisen M, McCarley RW, McDonald C, McGrath JJ, Medeiros H, Meier S, Melegh B, Melle I, Mesholam-Gately RI, Metspalu A, Michie PT, Milani L, Milanova V, Mitjans M, Molden E, Molina E, Molto MD, Mondelli V, Moreno C, Morley CP, Muntané G, Murphy KC, Myin-Germeys I, Nenadic I, Nestadt G, Nikitina-Zake L, Noto C, Nuechterlein KH, O'Brien NL, O'Neill FA, Oh SY, Olincy A, Ota VK, Pantelis C, Papadimitriou GN, Parellada M, Paunio T, Pellegrino R, Periyasamy S, Perkins DO, Pfuhlmann B, Pietiläinen O, Pimm J, Porteous D, Powell J, Quattrone D, Quested D, Radant AD, Rampino A, Rapaport MH, Rautanen A, Reichenberg A, Roe C, Roffman JL, Roth J, Rothermundt M, Rutten BPF, Saker-Delye S, Salomaa V, Sanjuan J, Santoro ML, Savitz A, Schall U, Scott RJ, Seidman LJ, Sharp SI, Shi J, Siever LJ, Sigurdsson E, Sim K, Skarabis N, Slominsky P, So HC, Sobell JL, Söderman E, Stain HJ, Steen NE, Steixner-Kumar AA, Stögmann E, Stone WS, Straub RE, Streit F, Strengman E, Stroup TS, Subramaniam M, Sugar CA, Suvisaari J, Svrakic DM, Swerdlow NR, Szatkiewicz JP, Ta TMT, Takahashi A, Terao C, Thibaut F, Toncheva D, Tooney PA, Torretta S, Tosato S, Tura GB, Turetsky BI, Üçok A, Vaaler A, van Amelsvoort T, van Winkel R, Veijola J, Waddington J, Walter H, Waterreus A, Webb BT, Weiser M, Williams NM, Witt SH, Wormley BK, Wu JQ, Xu Z, Yolken R, Zai CC, Zhou W, Zhu F, Zimprich F, Atbasoglu EC, Ayub M, Benner C, Bertolino A, Black DW, Bray NJ, Breen G, Buccola NG, et al. PMID: 35396580; PMCID: PMC9392466.
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PubMed Mentions:
1350 Fields:
Translation:
Humans
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SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse. Neuron. 2019; (103):1-18.
Frank Koopmans, 1, 2 Pim van Nierop, 2 Maria Andres-Alonso, 28, 29 Andrea Byrnes, 31 Tony Cijsouw, 18 Marcelo P. Coba, 3 L. Niels Cornelisse, 1 Ryan J. Farrell, 35 Hana L. Goldschmidt, 23 Daniel P. Howrigan, 31 Natasha K. Hussain, 23, 24
Cordelia Imig, 19 Arthur P.H. de Jong, 26 Hwajin Jung, 27 Mahdokht Kohansalnodehi, 25 Barbara Kramarz, 4 Noa Lipstein, 19 Ruth C. Lovering, 4 Harold MacGillavry, 22 Vittoria Mariano, 14, 15 Huaiyu Mi, 5 Momchil Ninov, 25 David Osumi-Sutherland, 6 Rainer Pielot, 21 Karl-Heinz Smalla, 21 Haiming Tang, 5 Katherine Tashman, 31 Ruud F.G. Toonen, 1 Chiara Verpelli, 36
Rita Reig-Viader, 16, 17 Kyoko Watanabe, 33, 34 Jan van Weering, 1 Tilmann Achsel, 14, 15 Ghazaleh Ashrafi, 35 Nimra Asi, 31 Tyler C. Brown, 31 Pietro De Camilli, 7 Marc Feuermann, 8 Rebecca E. Foulger, 4 Pascale Gaudet, 8 Anoushka Joglekar, 13 Alexandros Kanellopoulos, 14, 15 Robert Malenka, 9 Roger A. Nicoll, 10 Camila Pulido, 35 Jaime de Juan-Sanz, 35, Morgan Sheng, 11 Thomas C. Su€dhof, 12 Hagen U. Tilgner, 13 Claudia Bagni, 14, 15 A` lex Baye ´ s, 16, 17 Thomas Biederer, 18 Nils Brose, 19 John Jia En Chua, 20 Daniela C. Dieterich, 21 Eckart D. Gundelfinger, 21 Casper Hoogenraad, 22
Richard L. Huganir, 23, 24 Reinhard Jahn, 25 Pascal S. Kaeser, 26 Eunjoon Kim, 27 Michael R. Kreutz, 28, 29
Peter S. McPherson, 30 Ben M. Neale, 31 Vincent O’Connor, 32 Danielle Posthuma, 33, 34 Timothy A. Ryan, 35 Carlo Sala, 36 Guoping Feng, 31 Steven E. Hyman, 31 Paul D. Thomas, 5 August B. Smit, 2, 37, * and Matthijs Verhage1, 37, 38, *. View Publication.
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Endogenous Cell Type-Specific Disrupted in Schizophrenia 1 Interactomes Reveal Protein Networks Associated With Neurodevelopmental Disorders. Biol Psychiatry. 2019 02 15; 85(4):305-316.
Wilkinson B, Evgrafov OV, Zheng D, Hartel N, Knowles JA, Graham NA, Ichida JK, Coba MP. PMID: 29961565; PMCID: PMC6251761.
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PubMed Mentions:
17 Fields:
Translation:
HumansCells
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Haploinsufficiency leads to neurodegeneration in C9ORF72 ALS/FTD human induced motor neurons. Nat Med. 2018 03; 24(3):313-325.
Shi Y, Lin S, Staats KA, Li Y, Chang WH, Hung ST, Hendricks E, Linares GR, Wang Y, Son EY, Wen X, Kisler K, Wilkinson B, Menendez L, Sugawara T, Woolwine P, Huang M, Cowan MJ, Ge B, Koutsodendris N, Sandor KP, Komberg J, Vangoor VR, Senthilkumar K, Hennes V, Seah C, Nelson AR, Cheng TY, Lee SJ, August PR, Chen JA, Wisniewski N, Hanson-Smith V, Belgard TG, Zhang A, Coba M, Grunseich C, Ward ME, van den Berg LH, Pasterkamp RJ, Trotti D, Zlokovic BV, Ichida JK. PMID: 29400714; PMCID: PMC6112156.
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PubMed Mentions:
363 Fields:
Translation:
HumansAnimalsCells
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Dlgap1 knockout mice exhibit alterations of the postsynaptic density and selective reductions in sociability. Sci Rep. 2018 02 02; 8(1):2281.
Coba MP, Ramaker MJ, Ho EV, Thompson SL, Komiyama NH, Grant SGN, Knowles JA, Dulawa SC. PMID: 29396406; PMCID: PMC5797244.
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PubMed Mentions:
28 Fields:
Translation:
AnimalsCells
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Synaptic GAP and GEF Complexes Cluster Proteins Essential for GTP Signaling. Sci Rep. 2017 07 13; 7(1):5272.
Wilkinson B, Li J, Coba MP. PMID: 28706196; PMCID: PMC5509740.
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PubMed Mentions:
31 Fields:
Translation:
AnimalsCells
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Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders. Nat Neurosci. 2017 Aug; 20(8):1150-1161.
Li J, Zhang W, Yang H, Howrigan DP, Wilkinson B, Souaiaia T, Evgrafov OV, Genovese G, Clementel VA, Tudor JC, Abel T, Knowles JA, Neale BM, Wang K, Sun F, Coba MP. PMID: 28671696; PMCID: PMC5645082.
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PubMed Mentions:
69 Fields:
Translation:
AnimalsCells
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Long-term potentiation modulates synaptic phosphorylation networks and reshapes the structure of the postsynaptic interactome. Sci Signal. 2016 08 09; 9(440):rs8.
Li J, Wilkinson B, Clementel VA, Hou J, O'Dell TJ, Coba MP. PMID: 27507650.
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PubMed Mentions:
64 Fields:
Translation:
AnimalsCells
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Receptor Tyrosine Kinase MET Interactome and Neurodevelopmental Disorder Partners at the Developing Synapse. Biol Psychiatry. 2016 12 15; 80(12):933-942.
Xie Z, Li J, Baker J, Eagleson KL, Coba MP, Levitt P. PMID: 27086544; PMCID: PMC5001930.
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PubMed Mentions:
14 Fields:
Translation:
HumansCells
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TNiK is required for postsynaptic and nuclear signaling pathways and cognitive function. J Neurosci. 2012 Oct 03; 32(40):13987-99.
Coba MP, Komiyama NH, Nithianantharajah J, Kopanitsa MV, Indersmitten T, Skene NG, Tuck EJ, Fricker DG, Elsegood KA, Stanford LE, Afinowi NO, Saksida LM, Bussey TJ, O'Dell TJ, Grant SG. PMID: 23035106; PMCID: PMC3978779.
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PubMed Mentions:
61 Fields:
Translation:
AnimalsCells
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Neurotransmitters drive combinatorial multistate postsynaptic density networks. Sci Signal. 2009 Apr 28; 2(68):ra19.
Coba MP, Pocklington AJ, Collins MO, Kopanitsa MV, Uren RT, Swamy S, Croning MD, Choudhary JS, Grant SG. PMID: 19401593; PMCID: PMC3280897.
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PubMed Mentions:
74 Fields:
Translation:
AnimalsCells
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Kinase networks integrate profiles of N-methyl-D-aspartate receptor-mediated gene expression in hippocampus. J Biol Chem. 2008 Dec 05; 283(49):34101-7.
Coba MP, Valor LM, Kopanitsa MV, Afinowi NO, Grant SG. PMID: 18815127; PMCID: PMC2662229.
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PubMed Mentions:
25 Fields:
Translation:
AnimalsCells
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Synapse-associated protein 102/dlgh3 couples the NMDA receptor to specific plasticity pathways and learning strategies. J Neurosci. 2007 Mar 07; 27(10):2673-82.
Cuthbert PC, Stanford LE, Coba MP, Ainge JA, Fink AE, Opazo P, Delgado JY, Komiyama NH, O'Dell TJ, Grant SG. PMID: 17344405; PMCID: PMC2851144.
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PubMed Mentions:
92 Fields:
Translation:
AnimalsCells
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Proteomic analysis of in vivo phosphorylated synaptic proteins. J Biol Chem. 2005 Feb 18; 280(7):5972-82.
Collins MO, Yu L, Coba MP, Husi H, Campuzano I, Blackstock WP, Choudhary JS, Grant SG. PMID: 15572359.
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PubMed Mentions:
116 Fields:
Translation:
AnimalsCells
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