Jennifer Ann Cotter, MD

Photo of Jennifer Ann Cotter, MD
Title(s)Associate Professor of Clinical Pathology
SchoolKeck School of Medicine of Usc
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    Collapse Biography 
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    Keck School of Medicine, Los Angeles, CAM.D.05/2011
    University of California San Francisco, San Francisco, CA06/2015Anatomic Pathology, Neuropathology

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    1. Metabolic and molecular correlates of medulloblastoma: Identification of molecular groups using in vivo 1H-MR spectroscopy. Neuro Oncol. 2026 Aug 01; 28(8):2041-2052. Tamrazi B, Markowitz AL, Margol AS, Nelson MD, Krieger MD, Snuderl M, Ji J, Cen SY, Cotter J, Blüml S. PMID: 42135953; PMCID: PMC13437892.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    2. Intracranial mesenchymal tumor, FET::CREB fusion-positive: An integrative analysis of 81 cases. Neuro Oncol. 2026 Apr 01; 28(4):939-951. Rajan S, Chung HJ, Wu Z, Singh O, Dazelle K, Abdullaev Z, Tyagi M, Ferrone CK, Raffeld M, Lee I, Gagan J, Chen J, Cathcart S, Giannini C, Nguyen A, Gokden M, Perry A, Fernandes IL, Putnam AR, Kurek K, Green RM, Eberhart C, Lucas CH, Gonzalez-Gomez I, Lopez GY, Jones K, Prayson R, Yeaney G, Dermawan JKT, Chkheidze R, Appin C, Uhlmann EJ, Taliansky A, Blessing M, Mohila C, Cotter J, Deisch J, Andreiuolo F, Crawford JR, Mount C, Stemmer-Rachamimov AO, Lakis NS, Schmidt R, Chacko G, Newbury R, Neill S, Morales B, Fecher R, Sloan EA, Solomon DA, Nasrallah M, Quezado M, Fonseca A, Aldape K. PMID: 41569358; PMCID: PMC13128485.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    3. FOXR2-activated CNS neuroblastoma: Characterized by variable structural disruption of the FOXR2 regulatory region, recurrent copy number alterations, and elevated FOXR2 expression. Neurooncol Pediatr. 2026 Apr; 2(2):wuag014. Ji J, Yellapantula V, Xu D, Estrine D, Markowitz A, Han J, Ma K, Fong C, Hawes D, Margol A, O'Halloran K, Robison NJ, Biegel JA, Cotter JA, Raca G, Tsai JW. PMID: 41978643; PMCID: PMC13070476.
      View in: PubMed   Mentions:
    4. A tumor-associated photoreceptor signature unifies distinct central nervous system malignancies. Cancer Cell. 2026 Apr 13; 44(4):831-845.e10. Gudenas BL, Ahmad ST, Englinger B, Liu APY, Zhao M, Paul L, Hadley J, Li Y, Batts M, Mittal P, Wu SC, Lewis SA, Han K, Soliman T, Lin H, Janke L, Meredith D, Pfaff E, Gojo J, Cotter J, Klimo P, Boop FA, Gajjar A, Robinson GW, Rosén G, Alexandrescu S, Jones DTW, Orr BA, Swartling FJ, Filbin MG, Northcott PA. PMID: 41791379; PMCID: PMC13123407.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    5. A Single-Cell and Spatial 3D Multi-omic Atlas of Developing Human Basal Ganglia and Inhibitory Neurons. bioRxiv. 2026 Jan 29. Heffel MG, Xu H, Pastor-Alonso O, Li X, Baig MS, Irfan Ghoor R, Li R, Kern C, Kum J, Zhang Y, Paino J, Tsai MJ, Tai CY, Tucker G, Zhao Z, Hou A, von Behren Z, Bhade M, Li S, Sandoval K, Scholes J, Codrea F, Calimlim J, Liao EK, Leung G, Kim J, Eskin E, Flint J, Cotter JA, Pasaniuc B, Bintu B, Zhu Q, Mukamel EA, Ernst J, Paredes MF, Luo C. PMID: 41659519; PMCID: PMC12874046.
      View in: PubMed   Mentions:
    6. Establishment of normal myofiber size distribution in children and young adults. J Neuropathol Exp Neurol. 2025 Dec 01; 84(12):1159-1173. Lawlor MW, Margeta M, Jones KA, Schoser B, Cotter JA, Rajaram V, Moore SA, Prom MJ, Beatka M, Ott E, Slick RA, Collins MP, Esselman A, Shahnoor N, Danielson S, Meng H, Varfaj F, Prasad S, Rico S, Lee J, Kumar SN, Dressman HG. PMID: 41206585; PMCID: PMC12713552.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    7. Gestational Alloimmune Liver Disease and Congenital Athymia in a Neonate Born via In Vitro Fertilization Surrogacy. Pediatr Dev Pathol. 2026 Mar-Apr; 29(2):136-138. Wu M, Hernandez J, Rebbe R, Cotter J, Zhou S. PMID: 41246921.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    8. GPC2-CAR T cells have potent preclinical activity against orthotopic medulloblastoma xenografts. Mol Ther Oncol. 2025 Dec 18; 33(4):201067. Okada R, Fanuzzi M, Rodriguez C, Oh J, Sreenivasan A, Stack HG, Puebla M, Phadke I, Cole AP, Bradford S, Kelly MC, Lei H, Ho M, Cotter JA, Thiele CJ, Zhang X, Nellan A, Nguyen R. PMID: 41159102; PMCID: PMC12554907.
      View in: PubMed   Mentions: 1  
    9. Genome-wide cfDNA fragmentation patterns in cerebrospinal fluid reflect medulloblastoma groups. NPJ Precis Oncol. 2025 Aug 12; 9(1):280. Markowitz AL, Munugula C, Christodoulou E, Ji J, Xu L, Cotter JA, Yellapantula V. PMID: 40796676; PMCID: PMC12343951.
      View in: PubMed   Mentions:
    10. Molecular, histologic, and clinical characterization of methylation class pleomorphic xanthoastrocytoma: An analysis of 469 tumors. Neurooncol Adv. 2025 Jan-Dec; 7(1):vdaf089. Dampier CH, Shah N, Galbraith K, Ebrahimi A, Neto OLA, Abdullaev Z, Alexandrescu S, Andreiuolo F, Armstrong T, Baker T, Cathcart S, Chung HJ, Cimino PJ, Conway KS, Cotter J, Costa FD, Dazelle K, Etminam N, Ferman SE, Fernandes I, Ferrone CK, Gilani A, Gilbert M, Gregory J, Ketchum C, Lee HS, Lee I, Lopes MBS, Mao Q, Marshall MS, McCord M, Neill SG, Nirschl JJ, Ozer BH, Paulus W, Penas-Prado M, Prinz M, Pytel P, Quezado M, Raffeld M, Rajan S, Ratliff M, Reifenberger G, Robinson L, Schittenhelm J, Schrimpf D, Singh O, Thomas C, Thomas D, Thomas-Ogunniyi J, Toland A, Turakulov R, Vaubel R, Wadhwani N, Wu J, Giannini C, Snuderl M, Brandner S, von Deimling A, Aldape K. PMID: 40735274; PMCID: PMC12305539.
      View in: PubMed   Mentions:
    11. CNS methylation classifiers may misclassify normal developing cerebellar cortex as medulloblastoma. Acta Neuropathol. 2025 Jun 23; 149(1):66. Cotter JA, Markowitz AL, Castañeda E, Yen CY, Ostrow D, Hawes D, Ji J. PMID: 40549014; PMCID: PMC12185629.
      View in: PubMed   Mentions:    Fields:    
    12. Spatial Profiling Identifies Regionally Distinct Microenvironments and Targetable Immunosuppressive Mechanisms in Pediatric Osteosarcoma Pulmonary Metastases. Cancer Res. 2025 06 16; 85(12):2320-2337. Eigenbrood J, Wong N, Mallory P, Pereira JS, Williams D, Morris-Ii DW, Beck JA, Cronk JC, Sayers CM, Mendez M, Kaiser L, Galindo J, Singh J, Cardamone A, Pore M, Kelly M, LeBlanc AK, Cotter J, Kaplan RN, McEachron TA. PMID: 40173049; PMCID: PMC12170161.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    13. Isocitrate dehydrogenase 1 primes group-3 medulloblastomas for cuproptosis. Cancer Cell. 2025 Jun 09; 43(6):1159-1174.e8. Dang D, Deogharkar A, McKolay J, Smith KS, Panwalkar P, Hoffman S, Tian W, Ji S, Azambuja AP, Natarajan SK, Lum J, Bayliss J, Manzeck K, Sweha SR, Hamanishi E, Pun M, Patel D, Rau S, Animasahun O, Achreja A, Ogrodzinski MP, Diessl J, Cotter J, Hawes D, Yang F, Doherty R, Franson AT, Hanaford AR, Eberhart CG, Raabe EH, Orr BA, Wechsler-Reya RJ, Chen B, Lyssiotis CA, Shah YM, Lunt SY, Banerjee R, Judkins AR, Prensner JR, Koschmann C, Waszak SM, Nagrath D, Simoes-Costa M, Northcott PA, Venneti S. PMID: 40378837; PMCID: PMC12151749.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    14. Spatial profiling identifies regionally distinct microenvironments and targetable immunosuppressive mechanisms in pediatric osteosarcoma pulmonary metastases. bioRxiv. 2025 Jan 24. Eigenbrood J, Wong N, Mallory P, Pereira J, Morris-Ii DW, Beck JA, Cronk JC, Sayers CM, Mendez M, Kaiser L, Galindo J, Singh J, Cardamone A, Pore M, Kelly M, LeBlanc AK, Cotter J, Kaplan RN, McEachron TA. PMID: 39896512; PMCID: PMC11785069.
      View in: PubMed   Mentions:
    15. A comparative analysis of IDH-mutant glioma in pediatric, young adult, and older adult patients. Neuro Oncol. 2024 Dec 05; 26(12):2364-2376. Lim-Fat MJ, Cotter JA, Touat M, Vogelzang J, Sousa C, Pisano W, Geduldig J, Bhave V, Driver J, Kao PC, McGovern A, Ma C, Margol AS, Cole K, Smith A, Goldman S, Kaneva K, Truong A, Nazemi KJ, Wood MD, Wright KD, London WB, Warren KE, Wen PY, Bi WL, Alexandrescu S, Reardon DA, Ligon KL, Yeo KK. PMID: 39082676; PMCID: PMC11630535.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    16. Utility of OLIG2 immunostaining in pediatric brain tumors with embryonal morphology. J Neuropathol Exp Neurol. 2024 Dec 01; 83(12):1039-1046. Alturkustani M, Walker AD, Castañeda EA, Cotter JA. PMID: 39067019.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    17. Lack of classical astroblastoma features in pediatric MN1::BEND2-fused brain tumors. Brain Pathol. 2025 Mar; 35(2):e13297. Chapman N, Iqbal M, Walker AD, Hawes D, Davidson TB, Robison N, Tamrazi B, Ji J, Krieger MD, Cotter JA. PMID: 39237118; PMCID: PMC11835438.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    18. Pediatric Chordoma: A Tale of Two Genomes. Mol Cancer Res. 2024 08 02; 22(8):721-729. O'Halloran K, Hakimjavadi H, Bootwalla M, Ostrow D, Kerawala R, Cotter JA, Yellapantula V, Kaneva K, Wadhwani NR, Treece A, Foreman NK, Alexandrescu S, Velazquez Vega J, Biegel JA, Gai X. PMID: 38691518; PMCID: PMC11296893.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    19. A method for measuring mitochondrial DNA copy number in pediatric populations. Front Pediatr. 2024; 12:1401737. Maggo S, North LY, Ozuna A, Ostrow D, Grajeda YR, Hakimjavadi H, Cotter JA, Judkins AR, Levitt P, Gai X. PMID: 38938506; PMCID: PMC11208623.
      View in: PubMed   Mentions: 6  
    20. Effective re-induction regimen for children with recurrent medulloblastoma. Neurooncol Adv. 2024 Jan-Dec; 6(1):vdae070. O'Halloran K, Phadnis S, Friedman GK, Metrock K, Davidson TB, Robison NJ, Tamrazi B, Cotter JA, Dhall G, Margol AS. PMID: 38863988; PMCID: PMC11165644.
      View in: PubMed   Mentions: 2  
    21. Disease Evolution Monitored by Serial Cerebrospinal Fluid Liquid Biopsies in Two Cases of Recurrent Medulloblastoma. Int J Mol Sci. 2024 Apr 30; 25(9). O'Halloran K, Margol A, Davidson TB, Estrine D, Tamrazi B, Cotter JA, Ji J, Biegel JA. PMID: 38732099; PMCID: PMC11084520.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    22. Clinical, pathologic, and genomic characteristics of two pediatric glioneuronal tumors with a CLIP2::MET fusion. Acta Neuropathol Commun. 2024 04 22; 12(1):63. Chapman N, Greenwald J, Suddock J, Xu D, Markowitz A, Humphrey M, Cotter JA, Krieger MD, Hawes D, Ji J. PMID: 38650040; PMCID: PMC11036580.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    23. Developmental basis of SHH medulloblastoma heterogeneity. Nat Commun. 2024 01 08; 15(1):270. Gold MP, Ong W, Masteller AM, Ghasemi DR, Galindo JA, Park NR, Huynh NC, Donde A, Pister V, Saurez RA, Vladoiu MC, Hwang GH, Eisemann T, Donovan LK, Walker AD, Benetatos J, Dufour C, Garzia L, Segal RA, Wechsler-Reya RJ, Mesirov JP, Korshunov A, Pajtler KW, Pomeroy SL, Ayrault O, Davidson SM, Cotter JA, Taylor MD, Fraenkel E. PMID: 38191555; PMCID: PMC10774283.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    24. Expansion of endogenous T cells in CSF of pediatric CNS tumor patients undergoing locoregional delivery of IL13R〿2-targeting CAR T cells: an interim analysis. Res Sq. 2023 Oct 23. Wang L, Oill AT, Blanchard M, Wu M, Hibbard J, Sepulveda S, Peter L, Kilpatrick J, Munoz M, Stiller T, Shulkin N, Wagner J, Dolatabadi A, Nisis M, Shepphird J, Sanchez G, Lingaraju C, Manchanda M, Natri H, Kouakanou L, Sun G, Oliver-Cervantes C, Georges J, Aftabizadeh M, Forman S, Priceman S, Ressler J, Arvanitis L, Cotter J, D'Apuzzo M, Tamrazi B, Badie B, Davidson T, Banovich N, Brown C. PMID: 37961215; PMCID: PMC10635314.
      View in: PubMed   Mentions:
    25. Mutation signature filtering enables high-fidelity RNA structure probing at all four nucleobases with DMS. Nucleic Acids Res. 2023 09 08; 51(16):8744-8757. Mitchell D, Cotter J, Saleem I, Mustoe AM. PMID: 37334863; PMCID: PMC10484685.
      View in: PubMed   Mentions: 24     Fields:    Translation:Cells
    26. Low-pass whole-genome and targeted sequencing of cell-free DNA from cerebrospinal fluid in pediatric patients with central nervous system tumors. Neurooncol Adv. 2023 Jan-Dec; 5(1):vdad077. O'Halloran K, Yellapantula V, Christodoulou E, Ostrow D, Bootwalla M, Ji J, Cotter J, Chapman N, Chu J, Margol A, Krieger MD, Chiarelli PA, Gai X, Biegel JA. PMID: 37461402; PMCID: PMC10349915.
      View in: PubMed   Mentions: 17  
    27. Elevated liver enzymes: unusual presentation of anti-MDA5 antibody-associated juvenile dermatomyositis. Clin Exp Rheumatol. 2024 Feb; 42(2):456-457. Yi BY, Marrs J, Schenker R, Suddock J, Cotter JA, Cidon M. PMID: 37279157; PMCID: PMC12034223.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    28. Addendum: Sustained response of three pediatric BRAFV600E mutated high-grade gliomas to combined BRAF and MEK inhibitor therapy. Oncotarget. 2023 May 19; 14:502. Toll SA, Tran HN, Cotter J, Judkins AR, Tamrazi B, Biegel JA, Dhall G, Robison NJ, Waters K, Patel P, Cooper R, Margol AS. PMID: 37204254; PMCID: PMC10197959.
      View in: PubMed   Mentions:    Fields:    
    29. Hyaline protoplasmic astrocytopathy in epilepsy. Neuropathology. 2023 Dec; 43(6):441-456. Magaki S, Haeri M, Szymanski LJ, Chen Z, Diaz R, Williams CK, Chang JW, Ao Y, Newell KL, Khanlou N, Yong WH, Fallah A, Salamon N, Daniel T, Cotter J, Hawes D, Sofroniew M, Vinters HV. PMID: 37198977.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    30. 3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma. Nat Commun. 2023 04 21; 14(1):2300. Okonechnikov K, Camgöz A, Chapman O, Wani S, Park DE, Hübner JM, Chakraborty A, Pagadala M, Bump R, Chandran S, Kraft K, Acuna-Hidalgo R, Reid D, Sikkink K, Mauermann M, Juarez EF, Jenseit A, Robinson JT, Pajtler KW, Milde T, Jäger N, Fiesel P, Morgan L, Sridhar S, Coufal NG, Levy M, Malicki D, Hobbs C, Kingsmore S, Nahas S, Snuderl M, Crawford J, Wechsler-Reya RJ, Davidson TB, Cotter J, Michaiel G, Fleischhack G, Mundlos S, Schmitt A, Carter H, Michealraj KA, Kumar SA, Taylor MD, Rich J, Buchholz F, Mesirov JP, Pfister SM, Ay F, Dixon JR, Kool M, Chavez L. PMID: 37085539; PMCID: PMC10121654.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    31. Mutation signature filtering enables high-fidelity RNA structure probing at all four nucleobases with DMS. bioRxiv. 2023 Apr 11. Mitchell D, Cotter J, Saleem I, Mustoe AM. PMID: 37090560; PMCID: PMC10120657.
      View in: PubMed   Mentions:
    32. Combined low-pass whole genome and targeted sequencing in liquid biopsies for pediatric solid tumors. NPJ Precis Oncol. 2023 Feb 20; 7(1):21. Christodoulou E, Yellapantula V, O'Halloran K, Xu L, Berry JL, Cotter JA, Zdanowicz A, Mascarenhas L, Amatruda JF, Ostrow D, Bootwalla M, Gai X, Navid F, Biegel JA. PMID: 36805676; PMCID: PMC9941464.
      View in: PubMed   Mentions: 37  
    33. Multi-institutional study of the frequency, genomic landscape, and outcome of IDH-mutant glioma in pediatrics. Neuro Oncol. 2023 01 05; 25(1):199-210. Yeo KK, Alexandrescu S, Cotter JA, Vogelzang J, Bhave V, Li MM, Ji J, Benhamida JK, Rosenblum MK, Bale TA, Bouvier N, Kaneva K, Rosenberg T, Lim-Fat MJ, Ghosh H, Martinez M, Aguilera D, Smith A, Goldman S, Diamond EL, Gavrilovic I, MacDonald TJ, Wood MD, Nazemi KJ, Truong A, Cluster A, Ligon KL, Cole K, Bi WL, Margol AS, Karajannis MA, Wright KD. PMID: 35604410; PMCID: PMC9825351.
      View in: PubMed   Mentions: 22     Fields:    Translation:Humans
    34. The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location. Nat Genet. 2022 12; 54(12):1881-1894. Liu I, Jiang L, Samuelsson ER, Marco Salas S, Beck A, Hack OA, Jeong D, Shaw ML, Englinger B, LaBelle J, Mire HM, Madlener S, Mayr L, Quezada MA, Trissal M, Panditharatna E, Ernst KJ, Vogelzang J, Gatesman TA, Halbert ME, Palova H, Pokorna P, Sterba J, Slaby O, Geyeregger R, Diaz A, Findlay IJ, Dun MD, Resnick A, Suvà ML, Jones DTW, Agnihotri S, Svedlund J, Koschmann C, Haberler C, Czech T, Slavc I, Cotter JA, Ligon KL, Alexandrescu S, Yung WKA, Arrillaga-Romany I, Gojo J, Monje M, Nilsson M, Filbin MG. PMID: 36471067; PMCID: PMC9729116.
      View in: PubMed   Mentions: 121     Fields:    Translation:Humans
    35. Spectrum of paired-like homeobox 2b immunoexpression in pediatric brain tumors with embryonal morphology. Pathol Int. 2022 Aug; 72(8):402-410. Alturkustani M, Walker AD, Tran I, Snuderl M, Cotter JA. PMID: 35763016; PMCID: PMC9544136.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    36. Nests of dividing neuroblasts sustain interneuron production for the developing human brain. Science. 2022 01 28; 375(6579):eabk2346. Paredes MF, Mora C, Flores-Ramirez Q, Cebrian-Silla A, Del Dosso A, Larimer P, Chen J, Kang G, Gonzalez Granero S, Garcia E, Chu J, Delgado R, Cotter JA, Tang V, Spatazza J, Obernier K, Ferrer Lozano J, Vento M, Scott J, Studholme C, Nowakowski TJ, Kriegstein AR, Oldham MC, Hasenstaub A, Garcia-Verdugo JM, Alvarez-Buylla A, Huang EJ. PMID: 35084970; PMCID: PMC8887556.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    37. Intraoperative Diagnosis for Pediatric Brain Tumors. Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):10-22. Cotter JA, Szymanski LJ, Pawel BR, Judkins AR. PMID: 35168418.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    38. Medulloblastoma: WHO 2021 and Beyond. Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):23-33. Cotter JA, Hawkins C. PMID: 35168417.
      View in: PubMed   Mentions: 36     Fields:    Translation:Humans
    39. Evaluation and Diagnosis of Central Nervous System Embryonal Tumors (Non-Medulloblastoma). Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):34-45. Cotter JA, Judkins AR. PMID: 35168419.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    40. Autopsy findings of previously described case of diffuse intrinsic pontine glioma-like tumor with EZHIP expression and molecular features of PFA ependymoma. Acta Neuropathol Commun. 2021 06 23; 9(1):113. Alturkustani M, Cotter JA, Mahabir R, Hawes D, Koschmann C, Venneti S, Judkins AR, Szymanski LJ. PMID: 34162441; PMCID: PMC8220665.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    41. The spectrum of mitochondrial DNA (mtDNA) mutations in pediatric CNS tumors. Neurooncol Adv. 2021 Jan-Dec; 3(1):vdab074. Kaneva K, O'Halloran K, Triska P, Liu X, Merkurjev D, Bootwalla M, Ryutov A, Cotter JA, Ostrow D, Biegel JA, Gai X. PMID: 34337412; PMCID: PMC8320689.
      View in: PubMed   Mentions: 7  
    42. IDH-mutant brainstem gliomas in adolescent and young adult patients: Report of three cases and review of the literature. Brain Pathol. 2021 07; 31(4):e12959. Chang EK, Smith-Cohn MA, Tamrazi B, Ji J, Krieger M, Holdhoff M, Eberhart CG, Margol AS, Cotter JA. PMID: 33960568; PMCID: PMC8412065.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    43. Histopathological patterns in atypical teratoid/rhabdoid tumors are related to molecular subgroup. Brain Pathol. 2021 09; 31(5):e12967. Zin F, Cotter JA, Haberler C, Dottermusch M, Neumann J, Schüller U, Schweizer L, Thomas C, Nemes K, Johann PD, Kool M, Frühwald MC, Paulus W, Judkins A, Hasselblatt M. PMID: 33938067; PMCID: PMC8412123.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    44. A Practical Approach to the Evaluation and Diagnosis of Pediatric CNS Tumors. Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):6-9. Cotter JA, Viaene AN, Santi M, Hawkins C, Judkins AR. PMID: 33872110.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    45. Clinical utility of comprehensive genomic profiling in central nervous system tumors of children and young adults. Neurooncol Adv. 2021 Jan-Dec; 3(1):vdab037. Ji J, Kaneva K, Hiemenz MC, Dhall G, Davidson TB, Erdreich-Epstein A, Hawes D, Hurth K, Margol AS, Mathew AJ, Robison NJ, Schmidt RJ, Tran HN, Judkins AR, Cotter JA, Biegel JA. PMID: 33948563; PMCID: PMC8080244.
      View in: PubMed   Mentions: 6  
    46. Custom Pediatric Oncology Next-Generation Sequencing Panel Identifies Somatic Mosaicism in Archival Tissue and Enhances Targeted Clinical Care. Pediatr Neurol. 2021 01; 114:55-59. Quindipan C, Cotter JA, Ji J, Mitchell WG, Moke DJ, Navid F, Thomas SM, VanHirtum-Das M, Wang L, Saitta SC, Biegel JA, Hiemenz MC. PMID: 33221597.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    47. Primary diffuse leptomeningeal glioneuronal tumors of the central nervous system: Report of three cases and review of literature. Pediatr Hematol Oncol. 2020 Apr; 37(3):248-258. Abongwa C, Cotter J, Tamrazi B, Dhall G, Davidson T, Margol A. PMID: 31951480.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    48. Novel TRIM24-MET Fusion in a Neonatal Brain Tumor. JCO Precis Oncol. 2019 Dec; 3:1-6. Hiemenz MC, Skrypek MM, Cotter JA, Biegel JA. PMID: 35100688.
      View in: PubMed   Mentions: 7     Fields:    
    49. Expanding the spectrum of dicer1-associated sarcomas. Mod Pathol. 2020 01; 33(1):164-174. Warren M, Hiemenz MC, Schmidt R, Shows J, Cotter J, Toll S, Parham DM, Biegel JA, Mascarenhas L, Shah R. PMID: 31537896; PMCID: PMC7528621.
      View in: PubMed   Mentions: 29     Fields:    Translation:Humans
    50. Case 1: An 11-year-old Girl with Depression and Electrolyte Disturbance. Pediatr Rev. 2019 Aug; 40(8):421-424. Assaf RR, Levine M, Cheung C, Tamrazi B, Cotter JA, Bryant M, Kiehna EN. PMID: 31371635.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    51. An update on the central nervous system manifestations of tuberous sclerosis complex. Acta Neuropathol. 2020 04; 139(4):613-624. Cotter JA. PMID: 30976976.
      View in: PubMed   Mentions: 22     Fields:    Translation:Humans
    52. Sustained response of three pediatric BRAFV600E mutated high-grade gliomas to combined BRAF and MEK inhibitor therapy. Oncotarget. 2019 Jan 11; 10(4):551-557. Toll SA, Tran HN, Cotter J, Judkins AR, Tamrazi B, Biegel JA, Dhall G, Robison NJ, Waters K, Patel P, Cooper R, Margol AS. PMID: 30728904; PMCID: PMC6355184.
      View in: PubMed   Mentions: 32     Fields:    
    53. Fitting the epigenome into the picture: methylation classification for paediatric brain tumours. Neuropathol Appl Neurobiol. 2018 10; 44(6):543-547. Cotter JA, Judkins AR. PMID: 29679371.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    54. Transmission of a TP53 germline mutation from unaffected male carrier associated with pediatric glioblastoma in his child and gestational choriocarcinoma in his female partner. Cold Spring Harb Mol Case Stud. 2018 04; 4(2). Cotter JA, Szymanski L, Karimov C, Boghossian L, Margol A, Dhall G, Tamrazi B, Varaprasathan GI, Parham DM, Judkins AR, Biegel JA. PMID: 29581140; PMCID: PMC5880265.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    55. Palliative Care Options for a Young Adult Patient with a Diffuse Intrinsic Pontine Glioma. Cureus. 2017 Aug 18; 9(8):e1580. Sison J, Tran H, Margol A, Tiwari N, Garcia KM, Cotter J, Kiehna E, Olch AJ, Wong K. PMID: 29057192; PMCID: PMC5647135.
      View in: PubMed   Mentions: 3  
    56. Novel GOPC(FIG)-ROS1 fusion in a pediatric high-grade glioma survivor. J Neurosurg Pediatr. 2017 Jul; 20(1):51-55. Kiehna EN, Arnush MR, Tamrazi B, Cotter JA, Hawes D, Robison NJ, Fong CY, Estrine DB, Han JH, Biegel JA. PMID: 28387643.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    57. Extensive migration of young neurons into the infant human frontal lobe. Science. 2016 Oct 07; 354(6308). Paredes MF, James D, Gil-Perotin S, Kim H, Cotter JA, Ng C, Sandoval K, Rowitch DH, Xu D, McQuillen PS, Garcia-Verdugo JM, Huang EJ, Alvarez-Buylla A. PMID: 27846470; PMCID: PMC5436574.
      View in: PubMed   Mentions: 181     Fields:    Translation:HumansCells
    58. Clinico-pathological correlation in adenylate kinase 5 autoimmune limbic encephalitis. J Neuroimmunol. 2015 Oct 15; 287:31-5. Ng AS, Kramer J, Centurion A, Dalmau J, Huang E, Cotter JA, Geschwind MD. PMID: 26439959; PMCID: PMC4879958.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    59. Primary glioblastoma of the trigeminal nerve root entry zone: case report. J Neurosurg. 2015 Jan; 122(1):78-81. Breshears JD, Ivan ME, Cotter JA, Bollen AW, Theodosopoulos PV, Berger MS. PMID: 25380115.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    60. Massive CNS monocytic infiltration at autopsy in an alemtuzumab-treated patient with NMO. Neurol Neuroimmunol Neuroinflamm. 2014 Oct; 1(3):e34. Gelfand JM, Cotter J, Klingman J, Huang EJ, Cree BA. PMID: 25340086; PMCID: PMC4204228.
      View in: PubMed   Mentions: 33     Fields:    
    61. Rates and characteristics of radiographically detected intracerebral cavernous malformations after cranial radiation therapy in pediatric cancer patients. J Child Neurol. 2015 Jun; 30(7):842-849. Gastelum E, Sear K, Hills N, Roddy E, Randazzo D, Chettout N, Hess C, Cotter J, Haas-Kogan DA, Fullerton H, Mueller S. PMID: 25122111; PMCID: PMC4326593.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    62. Gangliogliomas of the optic pathway. J Clin Neurosci. 2014 Dec; 21(12):2244-9. Rolston JD, Han SJ, Cotter JA, El-Sayed IH, Aghi MK. PMID: 25043166.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    63. Isolated intracerebral light chain deposition disease: novel imaging and pathologic findings. Clin Imaging. 2014 Nov-Dec; 38(6):868-71. Yu JP, Wilson DM, Chang EF, Cotter J, Perry A, Mahindra A, Glastonbury CM. PMID: 25084689; PMCID: PMC4854295.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
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