Vasilis Marmarelis, PhD

Title(s)Professor of Biomedical Engineering
SchoolViterbi School of Engineering, Bme
AddressDRB 160
University Park Campus
Los Angeles CA 90089-1111
Phone+1 213 740 0841
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    Vasilis Z. Marmarelis received his diploma in Electrical and Mechanical Engineering from the National Technical University of Athens in 1972 and his M.S. and Ph.D. in Engineering Science (Bio-Information Systems) from the California Institute of Technology in 1973 and 1976, respectively. He was Simon Ramo Lecturer and Research Fellow at the California Institute of Technology from 1976 to 1978. In September 1978, he joined the faculty of the Biomedical and Electrical Engineering Departments at USC, where he is currently Professor and Co-Director of the Biomedical Simulations Resource (BMSR), a research center dedicated to modeling and simulation of physiological systems that has been funded by the NIH through multi-million dollar grants since 1985. Dr. Marmarelis served as Chairman of the Biomedical Engineering Department from 1990 to 1996 and he is a Fellow of the IEEE and the AIMBE.

    Collapse Research 
    Collapse Research Activities and Funding
    Model-based cerebrovascular markers extracted from hemodynamic data for diagnosing MCI or AD and predicting disease progression.
    NIH R01AG058162Sep 1, 2018 - May 31, 2023
    Role: Principal Investigator
    Biomedical Simulations Resource (BMSR)
    NIH P41EB001978Sep 30, 1997 - Aug 31, 2020
    Role: Co-Principal Investigator
    BIOMEDICAL SIMULATIONS RESOURCE
    NIH P41RR001861Sep 30, 1985 - Aug 31, 2003
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    1. Cognitive activity significantly affects the dynamic cerebral autoregulation, but not the dynamic vasoreactivity, in healthy adults. Front Physiol. 2024; 15:1350832. Rizko JM, Beishon LC, Panerai RB, Marmarelis VZ. PMID: 39314625; PMCID: PMC11417032.
      View in: PubMed   Mentions:
    2. Data-based modeling of cerebral hemodynamics quantifies impairment of cerebral blood flow regulation in type-2 diabetes. J Cereb Blood Flow Metab. 2024 May 15; 271678X241254716. Marmarelis VZ, Shin DC, Kang Y, Novak V. PMID: 38748923.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Time-domain methods for quantifying dynamic cerebral blood flow autoregulation: Review and recommendations. A white paper from the Cerebrovascular Research Network (CARNet). J Cereb Blood Flow Metab. 2024 Sep; 44(9):1480-1514. Kostoglou K, Bello-Robles F, Brassard P, Chacon M, Claassen JA, Czosnyka M, Elting JW, Hu K, Labrecque L, Liu J, Marmarelis VZ, Payne SJ, Shin DC, Simpson D, Smirl J, Panerai RB, Mitsis GD. PMID: 38688529; PMCID: PMC11418733.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    4. Developing a hippocampal neural prosthetic to facilitate human memory encoding and recall of stimulus features and categories. Front Comput Neurosci. 2024; 18:1263311. Roeder BM, She X, Dakos AS, Moore B, Wicks RT, Witcher MR, Couture DE, Laxton AW, Clary HM, Popli G, Liu C, Lee B, Heck C, Nune G, Gong H, Shaw S, Marmarelis VZ, Berger TW, Deadwyler SA, Song D, Hampson RE. PMID: 38390007; PMCID: PMC10881797.
      View in: PubMed   Mentions: 1  
    5. Impaired dynamic cerebral autoregulation measured in the middle cerebral artery in patients with vertebrobasilar ischemia is associated with autonomic failure. J Stroke Cerebrovasc Dis. 2024 Jan; 33(1):107454. Lakatos LB, Shin DC, Müller M, Österreich M, Marmarelis V, Bolognese M. PMID: 37931481; PMCID: PMC10841591.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    6. Multimodal neuroimaging data from a 5-week heart rate variability biofeedback randomized clinical trial. Sci Data. 2023 07 29; 10(1):503. Yoo HJ, Nashiro K, Min J, Cho C, Mercer N, Bachman SL, Nasseri P, Dutt S, Porat S, Choi P, Zhang Y, Grigoryan V, Feng T, Thayer JF, Lehrer P, Chang C, Stanley JA, Head E, Rouanet J, Marmarelis VZ, Narayanan S, Wisnowski J, Nation DA, Mather M. PMID: 37516756; PMCID: PMC10387077.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    7. Dynamic effects of cholinergic blockade upon cerebral blood flow autoregulation in healthy adults. Front Physiol. 2022; 13:1015544. Marmarelis VZ, Shin DC, Hamner JW, Tan CO. PMID: 36406984; PMCID: PMC9666788.
      View in: PubMed   Mentions: 2  
    8. Corrigendum: Patterned hippocampal stimulation facilitates memory in patients with a history of head impact and/or brain injury. Front Hum Neurosci. 2022; 16:1039221. Roeder BM, Riley MR, She X, Dakos AS, Robinson BS, Moore BJ, Couture DE, Laxton AW, Popli G, Munger Clary HM, Sam M, Heck C, Nune G, Lee B, Liu C, Shaw S, Gong H, Marmarelis VZ, Berger TW, Deadwyler SA, Song D, Hampson RE. PMID: 36277045; PMCID: PMC9583523.
      View in: PubMed   Mentions:
    9. Increasing coordination and responsivity of emotion-related brain regions with a heart rate variability biofeedback randomized trial. Cogn Affect Behav Neurosci. 2023 02; 23(1):66-83. Nashiro K, Min J, Yoo HJ, Cho C, Bachman SL, Dutt S, Thayer JF, Lehrer PM, Feng T, Mercer N, Nasseri P, Wang D, Chang C, Marmarelis VZ, Narayanan S, Nation DA, Mather M. PMID: 36109422; PMCID: PMC9931635.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    10. Patterned Hippocampal Stimulation Facilitates Memory in Patients With a History of Head Impact and/or Brain Injury. Front Hum Neurosci. 2022; 16:933401. Roeder BM, Riley MR, She X, Dakos AS, Robinson BS, Moore BJ, Couture DE, Laxton AW, Popli G, Clary HM, Sam M, Heck C, Nune G, Lee B, Liu C, Shaw S, Gong H, Marmarelis VZ, Berger TW, Deadwyler SA, Song D, Hampson RE. PMID: 35959242; PMCID: PMC9358788.
      View in: PubMed   Mentions: 2  
    11. The Dynamic Relationship Between Cortical Oxygenation and End-Tidal CO2 Transient Changes Is Impaired in Mild Cognitive Impairment Patients. Front Physiol. 2021; 12:772456. Marmarelis VZ, Shin DC, Zhang R. PMID: 34955886; PMCID: PMC8695976.
      View in: PubMed   Mentions:
    12. Closed-Loop Dynamic Modeling of the Heart-Rate Reflex to Concurrent Spontaneous Changes of Arterial Blood Pressure and CO2 Tension: Quantification of the Effects of Mild Cognitive Impairment. IEEE Trans Biomed Eng. 2021 11; 68(11):3347-3355. Marmarelis V, Shin D, Zhang R. PMID: 33819147.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    13. Predictive Modeling of Covid-19 Data in the US: Adaptive Phase-Space Approach. IEEE Open J Eng Med Biol. 2020; 1:207-213. Marmarelis VZ. PMID: 33870202; PMCID: PMC8049333.
      View in: PubMed   Mentions: 17  
    14. Assessment of dynamic cerebral autoregulation in humans: Is reproducibility dependent on blood pressure variability? PLoS One. 2020; 15(1):e0227651. Elting JW, Sanders ML, Panerai RB, Aries M, Bor-Seng-Shu E, Caicedo A, Chacon M, Gommer ED, Van Huffel S, Jara JL, Kostoglou K, Mahdi A, Marmarelis VZ, Mitsis GD, Müller M, Nikolic D, Nogueira RC, Payne SJ, Puppo C, Shin DC, Simpson DM, Tarumi T, Yelicich B, Zhang R, Claassen JAHR. PMID: 31923919; PMCID: PMC6954074.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    15. Quantification of dynamic cerebral autoregulation and CO2 dynamic vasomotor reactivity impairment in essential hypertension. J Appl Physiol (1985). 2020 02 01; 128(2):397-409. Marmarelis VZ, Shin DC, Oesterreich M, Mueller M. PMID: 31917625; PMCID: PMC7052591.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    16. Dysregulation of CO2-Driven Heart-Rate Chemoreflex Is Related Closely to Impaired CO2 Dynamic Vasomotor Reactivity in Mild Cognitive Impairment Patients. J Alzheimers Dis. 2020; 75(3):855-870. Marmarelis VZ, Shin DC, Zhang R. PMID: 32333588; PMCID: PMC7369119.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    17. Comparing model-based cerebrovascular physiomarkers with DTI biomarkers in MCI patients. Brain Behav. 2019 08; 9(8):e01356. Marmarelis VZ, Shin DC, Tarumi T, Zhang R. PMID: 31286695; PMCID: PMC6710205.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    18. Dynamic Cerebral Autoregulation Reproducibility Is Affected by Physiological Variability. Front Physiol. 2019; 10:865. Sanders ML, Elting JWJ, Panerai RB, Aries M, Bor-Seng-Shu E, Caicedo A, Chacon M, Gommer ED, Van Huffel S, Jara JL, Kostoglou K, Mahdi A, Marmarelis VZ, Mitsis GD, Müller M, Nikolic D, Nogueira RC, Payne SJ, Puppo C, Shin DC, Simpson DM, Tarumi T, Yelicich B, Zhang R, Claassen JAHR. PMID: 31354518; PMCID: PMC6634255.
      View in: PubMed   Mentions: 18  
    19. Closed-loop modeling of the heart-rate reflex for improved diagnosis and monitoring of Mild Cognitive Impairment. Annu Int Conf IEEE Eng Med Biol Soc. 2019 Jul; 2019:1879-1882. Marmarelis VZ, Shin DC, Zhang R. PMID: 31946264.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    20. Multi-Input, Multi-Output Neuronal Mode Network Approach to Modeling the Encoding Dynamics and Functional Connectivity of Neural Systems. Neural Comput. 2019 07; 31(7):1327-1355. Geng K, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW, Marmarelis VZ. PMID: 31113305; PMCID: PMC8035906.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    21. Reproducibility of dynamic cerebral autoregulation parameters: a multi-centre, multi-method study. Physiol Meas. 2018 12 07; 39(12):125002. Sanders ML, Claassen JAHR, Aries M, Bor-Seng-Shu E, Caicedo A, Chacon M, Gommer ED, Van Huffel S, Jara JL, Kostoglou K, Mahdi A, Marmarelis VZ, Mitsis GD, Müller M, Nikolic D, Nogueira RC, Payne SJ, Puppo C, Shin DC, Simpson DM, Tarumi T, Yelicich B, Zhang R, Panerai RB, Elting JWJ. PMID: 30523976.
      View in: PubMed   Mentions: 19     Fields:    Translation:Humans
    22. Developing a hippocampal neural prosthetic to facilitate human memory encoding and recall. J Neural Eng. 2018 06; 15(3):036014. Hampson RE, Song D, Robinson BS, Fetterhoff D, Dakos AS, Roeder BM, She X, Wicks RT, Witcher MR, Couture DE, Laxton AW, Munger-Clary H, Popli G, Sollman MJ, Whitlow CT, Marmarelis VZ, Berger TW, Deadwyler SA. PMID: 29589592; PMCID: PMC6576290.
      View in: PubMed   Mentions: 38     Fields:    Translation:Humans
    23. Designing Patient-Specific Optimal Neurostimulation Patterns for Seizure Suppression. Neural Comput. 2018 05; 30(5):1180-1208. Sandler RA, Geng K, Song D, Hampson RE, Witcher MR, Deadwyler SA, Berger TW, Marmarelis VZ. PMID: 29566356.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    24. Mechanism-Based and Input-Output Modeling of the Key Neuronal Connections and Signal Transformations in the CA3-CA1 Regions of the Hippocampus. Neural Comput. 2018 01; 30(1):149-183. Geng K, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW, Marmarelis VZ. PMID: 29064783.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    25. Cannabinoids disrupt memory encoding by functionally isolating hippocampal CA1 from CA3. PLoS Comput Biol. 2017 Jul; 13(7):e1005624. Sandler RA, Fetterhoff D, Hampson RE, Deadwyler SA, Marmarelis VZ. PMID: 28686594; PMCID: PMC5521875.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    26. Multiscale modeling in the clinic: diseases of the brain and nervous system. Brain Inform. 2017 Dec; 4(4):219-230. Lytton WW, Arle J, Bobashev G, Ji S, Klassen TL, Marmarelis VZ, Schwaber J, Sherif MA, Sanger TD. PMID: 28488252; PMCID: PMC5709279.
      View in: PubMed   Mentions: 12  
    27. Comparison of Model-Based Indices of Cerebral Autoregulation and Vasomotor Reactivity Using Transcranial Doppler versus Near-Infrared Spectroscopy in Patients with Amnestic Mild Cognitive Impairment. J Alzheimers Dis. 2017; 56(1):89-105. Marmarelis VZ, Shin DC, Tarumi T, Zhang R. PMID: 27911329; PMCID: PMC5240580.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    28. Sparse Large-Scale Nonlinear Dynamical Modeling of Human Hippocampus for Memory Prostheses. IEEE Trans Neural Syst Rehabil Eng. 2018 02; 26(2):272-280. Song D, Robinson BS, Hampson RE, Marmarelis VZ, Deadwyler SA, Berger TW. PMID: 28113595; PMCID: PMC5623111.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    29. Nonparametric Model of Smooth Muscle Force Production During Electrical Stimulation. J Comput Biol. 2017 Mar; 24(3):229-237. Cole M, Eikenberry S, Kato T, Sandler RA, Yamashiro SM, Marmarelis VZ. PMID: 27494114; PMCID: PMC5586159.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    30. Decoding memory features from hippocampal spiking activities using sparse classification models. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:1620-1623. Hampson RE, Robinson BS, Marmarelis VZ, Deadwyler SA, Berger TW. PMID: 28268639.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    31. Compartmental and Data-Based Modeling of Cerebral Hemodynamics: Nonlinear Analysis. IEEE Trans Biomed Eng. 2017 05; 64(5):1078-1088. Henley BC, Shin DC, Zhang R, Marmarelis VZ. PMID: 27411214; PMCID: PMC5592738.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    32. Methodology of Recurrent Laguerre-Volterra Network for Modeling Nonlinear Dynamic Systems. IEEE Trans Neural Netw Learn Syst. 2017 09; 28(9):2196-2208. Geng K, Marmarelis VZ. PMID: 27352401; PMCID: PMC5596897.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    33. A cognitive prosthesis for memory facilitation by closed-loop functional ensemble stimulation of hippocampal neurons in primate brain. Exp Neurol. 2017 01; 287(Pt 4):452-460. Deadwyler SA, Hampson RE, Song D, Opris I, Gerhardt GA, Marmarelis VZ, Berger TW. PMID: 27233622; PMCID: PMC5633045.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    34. Multiple-input nonlinear modelling of cerebral haemodynamics using spontaneous arterial blood pressure, end-tidal CO2 and heart rate measurements. Philos Trans A Math Phys Eng Sci. 2016 May 13; 374(2067). Marmarelis VZ, Mitsis GD, Shin DC, Zhang R. PMID: 27044989; PMCID: PMC4822442.
      View in: PubMed   Mentions: 12     Fields:    
    35. Compartmental and Data-Based Modeling of Cerebral Hemodynamics: Linear Analysis. IEEE Access. 2015; 3:2317-2332. Henley BC, Shin DC, Zhang R, Marmarelis VZ. PMID: 26900535; PMCID: PMC4756910.
      View in: PubMed   Mentions: 2  
    36. Distinguishing cognitive state with multifractal complexity of hippocampal interspike interval sequences. Front Syst Neurosci. 2015; 9:130. Fetterhoff D, Kraft RA, Sandler RA, Opris I, Sexton CA, Marmarelis VZ, Hampson RE, Deadwyler SA. PMID: 26441562; PMCID: PMC4585000.
      View in: PubMed   Mentions: 4  
    37. Hippocampal closed-loop modeling and implications for seizure stimulation design. J Neural Eng. 2015 Oct; 12(5):056017. Sandler RA, Song D, Hampson RE, Deadwyler SA, Berger TW, Marmarelis VZ. PMID: 26355815; PMCID: PMC5030843.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    38. Principal Dynamic Mode Analysis of EEG Data for Assisting the Diagnosis of Alzheimer's Disease. IEEE J Transl Eng Health Med. 2015; 3:1800110. Kang Y, Escudero J, Shin D, Ifeachor E, Marmarelis V. PMID: 27170890; PMCID: PMC4848106.
      View in: PubMed   Mentions: 6     Fields:    
    39. Sparse generalized volterra model of human hippocampal spike train transformation for memory prostheses. Annu Int Conf IEEE Eng Med Biol Soc. 2015; 2015:3961-4. Song D, Robinson BS, Hampson RE, Marmarelis VZ, Deadwyler SA, Berger TW. PMID: 26737161.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    40. Understanding spike-triggered covariance using Wiener theory for receptive field identification. J Vis. 2015; 15(9):16. Sandler RA, Marmarelis VZ. PMID: 26230978; PMCID: PMC4525694.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    41. System identification of point-process neural systems using probability based Volterra kernels. J Neurosci Methods. 2015 Jan 30; 240:179-92. Sandler RA, Deadwyler SA, Hampson RE, Song D, Berger TW, Marmarelis VZ. PMID: 25479231; PMCID: PMC4286344.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    42. Principal dynamic mode analysis of the Hodgkin-Huxley equations. Int J Neural Syst. 2015 Mar; 25(2):1550001. Eikenberry SE, Marmarelis VZ. PMID: 25630480; PMCID: PMC4519014.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    43. Identification of functional synaptic plasticity from spiking activities using nonlinear dynamical modeling. J Neurosci Methods. 2015 Apr 15; 244:123-35. Song D, Chan RH, Robinson BS, Marmarelis VZ, Opris I, Hampson RE, Deadwyler SA, Berger TW. PMID: 25280984; PMCID: PMC4383743.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    44. Model-based asessment of an in-vivo predictive relationship from CA1 to CA3 in the rodent hippocampus. J Comput Neurosci. 2015 Feb; 38(1):89-103. Sandler RA, Song D, Hampson RE, Deadwyler SA, Berger TW, Marmarelis VZ. PMID: 25260381; PMCID: PMC4297547.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    45. Differentiation of BIRADS-4 small breast lesions via Multimodal Ultrasound Tomography. Eur Radiol. 2015 Feb; 25(2):410-8. Zografos G, Liakou P, Koulocheri D, Liovarou I, Sofras M, Hadjiagapis S, Orme M, Marmarelis V. PMID: 25218763.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    46. Extraction and restoration of hippocampal spatial memories with non-linear dynamical modeling. Front Syst Neurosci. 2014; 8:97. Song D, Harway M, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 24904318; PMCID: PMC4036140.
      View in: PubMed   Mentions: 5  
    47. Between-centre variability in transfer function analysis, a widely used method for linear quantification of the dynamic pressure-flow relation: the CARNet study. Med Eng Phys. 2014 May; 36(5):620-7. Meel-van den Abeelen AS, Simpson DM, Wang LJ, Slump CH, Zhang R, Tarumi T, Rickards CA, Payne S, Mitsis GD, Kostoglou K, Marmarelis V, Shin D, Tzeng YC, Ainslie PN, Gommer E, Müller M, Dorado AC, Smielewski P, Yelicich B, Puppo C, Liu X, Czosnyka M, Wang CY, Novak V, Panerai RB, Claassen JA. PMID: 24725709; PMCID: PMC4155942.
      View in: PubMed   Mentions: 27     Fields:    Translation:Humans
    48. Model-based physiomarkers of cerebral hemodynamics in patients with mild cognitive impairment. Med Eng Phys. 2014 May; 36(5):628-37. Marmarelis VZ, Shin DC, Orme ME, Zhang R. PMID: 24698010; PMCID: PMC4076301.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    49. Donor/recipient enhancement of memory in rat hippocampus. Front Syst Neurosci. 2013; 7:120. Deadwyler SA, Berger TW, Sweatt AJ, Song D, Chan RH, Opris I, Gerhardt GA, Marmarelis VZ, Hampson RE. PMID: 24421759; PMCID: PMC3872745.
      View in: PubMed   Mentions: 27  
    50. Facilitation of memory encoding in primate hippocampus by a neuroprosthesis that promotes task-specific neural firing. J Neural Eng. 2013 Dec; 10(6):066013. Hampson RE, Song D, Opris I, Santos LM, Shin DC, Gerhardt GA, Marmarelis VZ, Berger TW, Deadwyler SA. PMID: 24216292; PMCID: PMC3919468.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    51. Time-varying modeling of cerebral hemodynamics. IEEE Trans Biomed Eng. 2014 Mar; 61(3):694-704. Marmarelis VZ, Shin DC, Orme M. PMID: 24184697; PMCID: PMC4059681.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    52. On parsing the neural code in the prefrontal cortex of primates using principal dynamic modes. J Comput Neurosci. 2014 Jun; 36(3):321-37. Marmarelis VZ, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW. PMID: 23929124; PMCID: PMC3918491.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    53. Analysis of intravenous glucose tolerance test data using parametric and nonparametric modeling: application to a population at risk for diabetes. J Diabetes Sci Technol. 2013 Jul 01; 7(4):952-62. Marmarelis VZ, Shin DC, Zhang Y, Kautzky-Willer A, Pacini G, D'Argenio DZ. PMID: 23911176; PMCID: PMC3879759.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    54. Model-based quantification of cerebral hemodynamics as a physiomarker for Alzheimer's disease? Ann Biomed Eng. 2013 Nov; 41(11):2296-317. Marmarelis VZ, Shin DC, Orme ME, Zhang R. PMID: 23771298; PMCID: PMC3992829.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCTClinical Trials
    55. Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functions. J Comput Neurosci. 2013 Dec; 35(3):335-57. Song D, Wang H, Tu CY, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 23674048; PMCID: PMC3805829.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    56. Closed-loop dynamic modeling of cerebral hemodynamics. Ann Biomed Eng. 2013 May; 41(5):1029-48. Marmarelis VZ, Shin DC, Orme ME, Zhang R. PMID: 23292615; PMCID: PMC3625507.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCTClinical Trials
    57. Conformal ceramic electrodes that record glutamate release and corresponding neural activity in primate prefrontal cortex. Annu Int Conf IEEE Eng Med Biol Soc. 2013; 2013:5954-7. Hampson RE, Fuqua JL, Huettl PF, Opris I, Song D, Shin D, Marmarelis VZ, Berger TW, Gerhardt GA, Deadwyler SA. PMID: 24111095.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    58. Design of optimal stimulation patterns for neuronal ensembles based on Volterra-type hierarchical modeling. J Neural Eng. 2012 Dec; 9(6):066003. Marmarelis VZ, Shin DC, Hampson RE, Deadwyler SA, Song D, Berger TW. PMID: 23075519; PMCID: PMC3538881.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    59. Novel technology of multimodal ultrasound tomography detects breast lesions. Eur Radiol. 2013 Mar; 23(3):673-83. Zografos G, Koulocheri D, Liakou P, Sofras M, Hadjiagapis S, Orme M, Marmarelis V. PMID: 22983317.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    60. Facilitation and restoration of cognitive function in primate prefrontal cortex by a neuroprosthesis that utilizes minicolumn-specific neural firing. J Neural Eng. 2012 Oct; 9(5):056012. Hampson RE, Gerhardt GA, Marmarelis V, Song D, Opris I, Santos L, Berger TW, Deadwyler SA. PMID: 22976769; PMCID: PMC3505670.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    61. Role of the hippocampus in memory formation: restorative encoding memory integration neural device as a cognitive neural prosthesis. IEEE Pulse. 2012 Sep-Oct; 3(5):17-22. Berger T, Song D, Chan R, Shin D, Marmarelis V, Hampson R, Sweatt A, Heck C, Liu C, Wills J, Lacoss J, Granacki J, Gerhardt G, Deadwyler S. PMID: 23014702.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    62. A nonlinear autoregressive Volterra model of the Hodgkin-Huxley equations. J Comput Neurosci. 2013 Feb; 34(1):163-83. Eikenberry SE, Marmarelis VZ. PMID: 22878687.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    63. Nonlinear modeling of dynamic interactions within neuronal ensembles using Principal Dynamic Modes. J Comput Neurosci. 2013 Feb; 34(1):73-87. Marmarelis VZ, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW. PMID: 23011343; PMCID: PMC3531564.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    64. Southern California: a hotbed of biomedical engineering: nine bioengineers describe their research and why Southern California has the biotech market cornered. IEEE Pulse. 2012 Jul; 3(4):14-21. Berger T, Meng E, George S, Khoo M, Marmarelis V, McCulloch A, Cauwenberghs G, Ohno-Machado L, Schultz J, Johnson JP. PMID: 23008840.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
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    68. Functional connectivity between Layer 2/3 and Layer 5 neurons in prefrontal cortex of nonhuman primates during a delayed match-to-sample task. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:2555-8. Song D, Opris I, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 23366446.
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    69. Analog low-power hardware implementation of a Laguerre-Volterra model of intracellular subthreshold neuronal activity. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:767-70. Ghaderi VS, Roach S, Song D, Marmarelis VZ, Choma J, Berger TW. PMID: 23366005.
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    70. Relationships between spike-free local field potentials and spike timing in human temporal cortex. J Neurophysiol. 2012 Apr; 107(7):1808-21. Zanos S, Zanos TP, Marmarelis VZ, Ojemann GA, Fetz EE. PMID: 22157112; PMCID: PMC3331669.
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    71. Editorial: TBME Letters special issue on multiscale modeling and analysis in computational biology and medicine--part-2. IEEE Trans Biomed Eng. 2011 Dec; 58(12):3434-9. Coatrieux JL, Frangi AF, Peng GC, D'Argenio DZ, Marmarelis VZ, Michailova A. PMID: 22105190; PMCID: PMC3958427.
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    73. Memory encoding in hippocampal ensembles is negatively influenced by cannabinoid CB1 receptors. Behav Pharmacol. 2011 Aug; 22(4):335-46. Hampson RE, Sweatt AJ, Goonawardena AV, Song D, Chan RH, Marmarelis VZ, Berger TW, Deadwyler SA. PMID: 21558844; PMCID: PMC3135765.
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    76. Estimation and statistical validation of event-invariant nonlinear dynamic models of hippocampal CA3-CA1 population activities. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:3330-3. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 22255052.
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    77. Dynamic nonlinear modeling of interactions between neuronal ensembles using principal dynamic modes. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:3334-7. Marmarelis VZ, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW. PMID: 22255053.
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    81. Boolean modeling of neural systems with point-process inputs and outputs. Part I: theory and simulations. Ann Biomed Eng. 2009 Aug; 37(8):1654-67. Marmarelis VZ, Zanos TP, Berger TW. PMID: 19517238; PMCID: PMC2917726.
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    83. Nonlinear modeling of the dynamic effects of infused insulin on glucose: comparison of compartmental with Volterra models. IEEE Trans Biomed Eng. 2009 Oct; 56(10):2347-58. Mitsis GD, Markakis MG, Marmarelis VZ. PMID: 19497805; PMCID: PMC2821106.
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    84. Nonlinear modeling of neural population dynamics for hippocampal prostheses. Neural Netw. 2009 Nov; 22(9):1340-51. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 19501484; PMCID: PMC2821165.
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    86. Nonlinear modeling of causal interrelationships in neuronal ensembles. IEEE Trans Neural Syst Rehabil Eng. 2008 Aug; 16(4):336-52. Zanos TP, Courellis SH, Berger TW, Hampson RE, Deadwyler SA, Marmarelis VZ. PMID: 18701382; PMCID: PMC2729787.
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    87. Parametric and non-parametric modeling of short-term synaptic plasticity. Part I: Computational study. J Comput Neurosci. 2009 Feb; 26(1):1-19. Song D, Marmarelis VZ, Berger TW. PMID: 18506609; PMCID: PMC2770349.
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    89. Differentiation of cancerous lesions in excised human breast specimens using multiband attenuation profiles from ultrasonic transmission tomography. J Ultrasound Med. 2008 Mar; 27(3):435-51. Jeong JW, Shin DC, Do SH, Blanco C, Klipfel NE, Holmes DR, Hovanessian-Larsen LJ, Marmarelis VZ. PMID: 18314522.
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    90. Modeling the nonlinear dynamic interactions of afferent pathways in the dentate gyrus of the hippocampus. Ann Biomed Eng. 2008 May; 36(5):852-64. Dimoka A, Courellis SH, Marmarelis VZ, Berger TW. PMID: 18299993; PMCID: PMC2749714.
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    91. Modeling the nonlinear properties of the in vitro hippocampal perforant path-dentate system using multielectrode array technology. IEEE Trans Biomed Eng. 2008 Feb; 55(2 Pt 1):693-702. Dimoka A, Courellis SH, Gholmieh GI, Marmarelis VZ, Berger TW. PMID: 18270006; PMCID: PMC2749727.
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    92. Computational study of an augmented minimal model for glycaemia control. Annu Int Conf IEEE Eng Med Biol Soc. 2008; 2008:5445-8. Markakis MG, Mitsis GD, Marmarelis VZ. PMID: 19163949.
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    93. Predicting EMG with generalized Volterra kernel model. Annu Int Conf IEEE Eng Med Biol Soc. 2008; 2008:201-4. Song D, Hendrickson P, Marmarelis VZ, Aguayo J, He J, Loeb GE, Berger TW. PMID: 19162628.
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    94. Model Predictive Control of blood glucose in Type 1 diabetes: the Principal Dynamic Modes approach. Annu Int Conf IEEE Eng Med Biol Soc. 2008; 2008:5466-9. Markakis MG, Mitsis GD, Papavassilopoulos GP, Marmarelis VZ. PMID: 19163954.
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    96. Nonlinear dynamic modeling of spike train transformations for hippocampal-cortical prostheses. IEEE Trans Biomed Eng. 2007 Jun; 54(6 Pt 1):1053-66. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 17554824.
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    97. Nonlinear dynamic model of CA1 short-term plasticity using random impulse train stimulation. Ann Biomed Eng. 2007 May; 35(5):847-57. Gholmieh G, Courellis S, Marmarelis V, Berger T. PMID: 17380396.
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    100. Nonlinear, multiple-input modeling of cerebral hemodynamics during baseline and hypercapnia in young and post-menopausal women. Annu Int Conf IEEE Eng Med Biol Soc. 2007; 2007:2855-8. Mitsis GD, Debert CT, Hajo MI, Marmarelis VZ, Poulin MJ. PMID: 18002590.
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    101. Improving bioassay sensitivity for neurotoxins detection using volterra based third order nonlinear analysis. Annu Int Conf IEEE Eng Med Biol Soc. 2007; 2007:2261-4. Gholmieh GI, Courellis SH, Fluster D, Chen LS, Marmarelis VZ, Baudry M, Berger TW. PMID: 18002441.
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    102. Principal dynamic mode analysis of action potential firing in a spider mechanoreceptor. Biol Cybern. 2007 Jan; 96(1):113-27. Mitsis GD, French AS, Höger U, Courellis S, Marmarelis VZ. PMID: 17021828.
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    103. Segmentation methodology for automated classification and differentiation of soft tissues in multiband images of high-resolution ultrasonic transmission tomography. IEEE Trans Med Imaging. 2006 Aug; 25(8):1068-78. Jeong JW, Shin DC, Do S, Marmarelis VZ. PMID: 16894999.
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    104. Cerebral hemodynamics during orthostatic stress assessed by nonlinear modeling. J Appl Physiol (1985). 2006 Jul; 101(1):354-66. Mitsis GD, Zhang R, Levine BD, Marmarelis VZ. PMID: 16514006.
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    105. A multi-input modeling approach to quantify hippocampal nonlinear dynamic transformations. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:4967-70. Zanos TP, Courellis SH, Hampson RE, Deadwyler SA, Marmarelis VZ, Berger TW. PMID: 17946273.
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    106. Interaction of short-term neuronal plasticity and synaptic plasticity revealed by nonlinear systems analysis in dentate granule cells. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:5543-6. Xie X, Song D, Wang Z, Marmarelis VZ, Berger TW. PMID: 17946314.
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    108. Physiologically plausible stochastic nonlinear kernel models of spike train to spike train transformation. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:6129-32. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 17946359.
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    109. Modeling the nonlinear dynamic interactions of the lateral and the medial perforant path of the hippocampal dentate gyrus. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:5539-42. Dimoka A, Courellis SH, Marmarelis VZ, Berger TW. PMID: 17946313.
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    112. Restoring lost cognitive function. IEEE Eng Med Biol Mag. 2005 Sep-Oct; 24(5):30-44. Berger TW, Ahuja A, Courellis SH, Deadwyler SA, Erinjippurath G, Gerhardt GA, Gholmieh G, Granacki JJ, Hampson R, Hsaio MC, LaCoss J, Marmarelis VZ, Nasiatka P, Srinivasan V, Song D, Tanguay AR, Wills J. PMID: 16248115.
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    113. General methodology for nonlinear modeling of neural systems with Poisson point-process inputs. Math Biosci. 2005 Jul; 196(1):1-13. Marmarelis VZ, Berger TW. PMID: 15963534.
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    114. An analytical model of multilayer ultrasonic transducers with an inversion layer. IEEE Trans Ultrason Ferroelectr Freq Control. 2005 Mar; 52(3):469-79. Huang C, Marmarelis VZ, Zhou Q, Shung KK. PMID: 15857055.
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    116. Half-thickness inversion layer high-frequency ultrasonic transducers using LiNbO3 single crystal. IEEE Trans Ultrason Ferroelectr Freq Control. 2005 Jan; 52(1):127-33. Zhou Q, Cannata JM, Guo H, Huang C, Marmarelis VZ, Shung KK. PMID: 15742569.
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    120. A modeling paradigm incorporating parametric and non-parametric methods. Conf Proc IEEE Eng Med Biol Soc. 2004; 2006:647-50. Song D, Wang Z, Marmarelis VZ, Berger TW. PMID: 17271760.
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    123. Modeling of nonlinear physiological systems with fast and slow dynamics. II. Application to cerebral autoregulation. Ann Biomed Eng. 2002 Apr; 30(4):555-65. Mitsis GD, Zhang R, Levine BD, Marmarelis VZ. PMID: 12086006.
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    126. A novel network for nonlinear modeling of neural systems with arbitrary point-process inputs. Neural Netw. 2000 Mar; 13(2):255-66. Alataris K, Berger TW, Marmarelis VZ. PMID: 10935764.
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    127. Laser induced fluorescence attenuation spectroscopy: detection of hypoxia. IEEE Trans Biomed Eng. 2000 Mar; 47(3):301-12. Shehada RE, Marmarelis VZ, Mansour HN, Grundfest WS. PMID: 10743771.
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    128. Application of a novel modeling method to the nonstationary properties of potentiation in the rabbit hippocampus. Ann Biomed Eng. 1999 Sep-Oct; 27(5):581-91. Iatrou M, Berger TW, Marmarelis VZ. PMID: 10548328.
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    129. Principal dynamic mode analysis of nonlinear transduction in a spider mechanoreceptor. Ann Biomed Eng. 1999 May-Jun; 27(3):391-402. Marmarelis VZ, Juusola M, French AS. PMID: 10374731.
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    130. Nonlinear analysis of renal autoregulation in rats using principal dynamic modes. Ann Biomed Eng. 1999 Jan-Feb; 27(1):23-31. Marmarelis VZ, Chon KH, Holstein-Rathlou NH, Marsh DJ. PMID: 9916757.
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    137. Nonlinear neuronal mode analysis of action potential encoding in the cockroach tactile spine neuron. Biol Cybern. 1995 Oct; 73(5):425-30. French AS, Marmarelis VZ. PMID: 7578479.
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    138. Detection of interactions between myogenic and TGF mechanisms using nonlinear analysis. Am J Physiol. 1994 Jul; 267(1 Pt 2):F160-73. Chon KH, Chen YM, Marmarelis VZ, Marsh DJ, Holstein-Rathlou NH. PMID: 8048557.
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    144. Control of excimer laser aided tissue ablation via laser-induced fluorescence monitoring. Appl Opt. 1990 Nov 20; 29(33):4950-5. Papazoglou TG, Papaioannou T, Arakawa K, Fishbein M, Marmarelis VZ, Grundfest WS. PMID: 20577490.
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    148. Quantifying deficiencies associated with Parkinson's disease by use of time-series analysis. Electroencephalogr Clin Neurophysiol. 1988 Jan; 69(1):24-33. Abdel-Malek A, Markham CH, Marmarelis PZ, Marmarelis VZ. PMID: 2448118.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    149. Use of a random forcing for high-frequency ventilation. J Appl Physiol (1985). 1987 Mar; 62(3):1201-5. Ghazanshahi SD, Yamashiro SM, Marmarelis VZ. PMID: 3106310.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    150. Applications of minimum-order Wiener modeling to retinal ganglion cell spatiotemporal dynamics. Biol Cybern. 1987; 57(4-5):241-7. Citron MC, Marmarelis VZ. PMID: 3689833.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    151. A linear spatio-temporal model of the light-to-bipolar cell system and its response characteristics to moving bars. Biol Cybern. 1987; 57(6):357-63. Curlander JC, Marmarelis VZ. PMID: 3435724.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    152. Minimum-order Wiener modelling of spike-output systems. Biol Cybern. 1986; 54(2):115-23. Marmarelis VZ, Citron MC, Vivo CP. PMID: 3719030.
      View in: PubMed   Mentions: 12     Fields:    
    153. Analysis of the gas exchange system dynamics during high-frequency ventilation. Ann Biomed Eng. 1986; 14(6):525-42. Ghazanshahi SD, Marmarelis VZ, Yamashiro SM. PMID: 3103501.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    154. A family of quasi-white random signals and its optimal use in biological system identification. Part II: application to the photoreceptor of Calliphora erythrocephala. Biol Cybern. 1977 Jul 08; 27(1):57-62. Marmarelis VZ, McCann GD. PMID: 889958.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCellsPHPublic Health
    155. A family of quasi-white random signals and its optimal use in biological system identification. Part I: theory. Biol Cybern. 1977 Jul 08; 27(1):49-56. Marmarelis VZ. PMID: 889957.
      View in: PubMed   Mentions: 9     Fields:    Translation:PHPublic Health
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