Vasilis Marmarelis, PhD

Title(s)Professor of Biomedical Engineering
SchoolViterbi School of Engineering, Bme
AddressDRB 160
University Park Campus
Los Angeles CA 90089-1111
Phone+1 213 740 0841
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    Vasilis Z. Marmarelis received his diploma in Electrical and Mechanical Engineering from the National Technical University of Athens in 1972 and his M.S. and Ph.D. in Engineering Science (Bio-Information Systems) from the California Institute of Technology in 1973 and 1976, respectively. He was Simon Ramo Lecturer and Research Fellow at the California Institute of Technology from 1976 to 1978. In September 1978, he joined the faculty of the Biomedical and Electrical Engineering Departments at USC, where he is currently Professor and Co-Director of the Biomedical Simulations Resource (BMSR), a research center dedicated to modeling and simulation of physiological systems that has been funded by the NIH through multi-million dollar grants since 1985. Dr. Marmarelis served as Chairman of the Biomedical Engineering Department from 1990 to 1996 and he is a Fellow of the IEEE and the AIMBE.

    Collapse Research 
    Collapse Research Activities and Funding
    Model-based cerebrovascular markers extracted from hemodynamic data for diagnosing MCI or AD and predicting disease progression.
    NIH R01AG058162Sep 1, 2018 - May 31, 2023
    Role: Principal Investigator
    Biomedical Simulations Resource (BMSR)
    NIH P41EB001978Sep 30, 1997 - Aug 31, 2020
    Role: Co-Principal Investigator
    BIOMEDICAL SIMULATIONS RESOURCE
    NIH P41RR001861Sep 30, 1985 - Aug 31, 2003
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    1. Developing a hippocampal neural prosthetic to facilitate human memory encoding and recall of stimulus features and categories. Front Comput Neurosci. 2024; 18:1263311. Roeder BM, She X, Dakos AS, Moore B, Wicks RT, Witcher MR, Couture DE, Laxton AW, Clary HM, Popli G, Liu C, Lee B, Heck C, Nune G, Gong H, Shaw S, Marmarelis VZ, Berger TW, Deadwyler SA, Song D, Hampson RE. PMID: 38390007; PMCID: PMC10881797.
      View in: PubMed   Mentions:
    2. Impaired dynamic cerebral autoregulation measured in the middle cerebral artery in patients with vertebrobasilar ischemia is associated with autonomic failure. J Stroke Cerebrovasc Dis. 2024 Jan; 33(1):107454. Lakatos LB, Shin DC, Müller M, Österreich M, Marmarelis V, Bolognese M. PMID: 37931481; PMCID: PMC10841591.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Multimodal neuroimaging data from a 5-week heart rate variability biofeedback randomized clinical trial. Sci Data. 2023 07 29; 10(1):503. Yoo HJ, Nashiro K, Min J, Cho C, Mercer N, Bachman SL, Nasseri P, Dutt S, Porat S, Choi P, Zhang Y, Grigoryan V, Feng T, Thayer JF, Lehrer P, Chang C, Stanley JA, Head E, Rouanet J, Marmarelis VZ, Narayanan S, Wisnowski J, Nation DA, Mather M. PMID: 37516756; PMCID: PMC10387077.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    4. Dynamic effects of cholinergic blockade upon cerebral blood flow autoregulation in healthy adults. Front Physiol. 2022; 13:1015544. Marmarelis VZ, Shin DC, Hamner JW, Tan CO. PMID: 36406984; PMCID: PMC9666788.
      View in: PubMed   Mentions:
    5. Corrigendum: Patterned hippocampal stimulation facilitates memory in patients with a history of head impact and/or brain injury. Front Hum Neurosci. 2022; 16:1039221. Roeder BM, Riley MR, She X, Dakos AS, Robinson BS, Moore BJ, Couture DE, Laxton AW, Popli G, Munger Clary HM, Sam M, Heck C, Nune G, Lee B, Liu C, Shaw S, Gong H, Marmarelis VZ, Berger TW, Deadwyler SA, Song D, Hampson RE. PMID: 36277045; PMCID: PMC9583523.
      View in: PubMed   Mentions:
    6. Increasing coordination and responsivity of emotion-related brain regions with a heart rate variability biofeedback randomized trial. Cogn Affect Behav Neurosci. 2023 02; 23(1):66-83. Nashiro K, Min J, Yoo HJ, Cho C, Bachman SL, Dutt S, Thayer JF, Lehrer PM, Feng T, Mercer N, Nasseri P, Wang D, Chang C, Marmarelis VZ, Narayanan S, Nation DA, Mather M. PMID: 36109422; PMCID: PMC9931635.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    7. Patterned Hippocampal Stimulation Facilitates Memory in Patients With a History of Head Impact and/or Brain Injury. Front Hum Neurosci. 2022; 16:933401. Roeder BM, Riley MR, She X, Dakos AS, Robinson BS, Moore BJ, Couture DE, Laxton AW, Popli G, Clary HM, Sam M, Heck C, Nune G, Lee B, Liu C, Shaw S, Gong H, Marmarelis VZ, Berger TW, Deadwyler SA, Song D, Hampson RE. PMID: 35959242; PMCID: PMC9358788.
      View in: PubMed   Mentions: 2  
    8. The Dynamic Relationship Between Cortical Oxygenation and End-Tidal CO2 Transient Changes Is Impaired in Mild Cognitive Impairment Patients. Front Physiol. 2021; 12:772456. Marmarelis VZ, Shin DC, Zhang R. PMID: 34955886; PMCID: PMC8695976.
      View in: PubMed   Mentions:
    9. Closed-Loop Dynamic Modeling of the Heart-Rate Reflex to Concurrent Spontaneous Changes of Arterial Blood Pressure and CO2 Tension: Quantification of the Effects of Mild Cognitive Impairment. IEEE Trans Biomed Eng. 2021 11; 68(11):3347-3355. Marmarelis V, Shin D, Zhang R. PMID: 33819147.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Predictive Modeling of Covid-19 Data in the US: Adaptive Phase-Space Approach. IEEE Open J Eng Med Biol. 2020; 1:207-213. Marmarelis VZ. PMID: 33870202; PMCID: PMC8049333.
      View in: PubMed   Mentions: 17  
    11. Assessment of dynamic cerebral autoregulation in humans: Is reproducibility dependent on blood pressure variability? PLoS One. 2020; 15(1):e0227651. Elting JW, Sanders ML, Panerai RB, Aries M, Bor-Seng-Shu E, Caicedo A, Chacon M, Gommer ED, Van Huffel S, Jara JL, Kostoglou K, Mahdi A, Marmarelis VZ, Mitsis GD, Müller M, Nikolic D, Nogueira RC, Payne SJ, Puppo C, Shin DC, Simpson DM, Tarumi T, Yelicich B, Zhang R, Claassen JAHR. PMID: 31923919; PMCID: PMC6954074.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    12. Quantification of dynamic cerebral autoregulation and CO2 dynamic vasomotor reactivity impairment in essential hypertension. J Appl Physiol (1985). 2020 02 01; 128(2):397-409. Marmarelis VZ, Shin DC, Oesterreich M, Mueller M. PMID: 31917625; PMCID: PMC7052591.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    13. Dysregulation of CO2-Driven Heart-Rate Chemoreflex Is Related Closely to Impaired CO2 Dynamic Vasomotor Reactivity in Mild Cognitive Impairment Patients. J Alzheimers Dis. 2020; 75(3):855-870. Marmarelis VZ, Shin DC, Zhang R. PMID: 32333588; PMCID: PMC7369119.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    14. Comparing model-based cerebrovascular physiomarkers with DTI biomarkers in MCI patients. Brain Behav. 2019 08; 9(8):e01356. Marmarelis VZ, Shin DC, Tarumi T, Zhang R. PMID: 31286695; PMCID: PMC6710205.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    15. Dynamic Cerebral Autoregulation Reproducibility Is Affected by Physiological Variability. Front Physiol. 2019; 10:865. Sanders ML, Elting JWJ, Panerai RB, Aries M, Bor-Seng-Shu E, Caicedo A, Chacon M, Gommer ED, Van Huffel S, Jara JL, Kostoglou K, Mahdi A, Marmarelis VZ, Mitsis GD, Müller M, Nikolic D, Nogueira RC, Payne SJ, Puppo C, Shin DC, Simpson DM, Tarumi T, Yelicich B, Zhang R, Claassen JAHR. PMID: 31354518; PMCID: PMC6634255.
      View in: PubMed   Mentions: 14  
    16. Closed-loop modeling of the heart-rate reflex for improved diagnosis and monitoring of Mild Cognitive Impairment. Annu Int Conf IEEE Eng Med Biol Soc. 2019 Jul; 2019:1879-1882. Marmarelis VZ, Shin DC, Zhang R. PMID: 31946264.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    17. Multi-Input, Multi-Output Neuronal Mode Network Approach to Modeling the Encoding Dynamics and Functional Connectivity of Neural Systems. Neural Comput. 2019 07; 31(7):1327-1355. Geng K, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW, Marmarelis VZ. PMID: 31113305; PMCID: PMC8035906.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    18. Reproducibility of dynamic cerebral autoregulation parameters: a multi-centre, multi-method study. Physiol Meas. 2018 12 07; 39(12):125002. Sanders ML, Claassen JAHR, Aries M, Bor-Seng-Shu E, Caicedo A, Chacon M, Gommer ED, Van Huffel S, Jara JL, Kostoglou K, Mahdi A, Marmarelis VZ, Mitsis GD, Müller M, Nikolic D, Nogueira RC, Payne SJ, Puppo C, Shin DC, Simpson DM, Tarumi T, Yelicich B, Zhang R, Panerai RB, Elting JWJ. PMID: 30523976.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    19. Developing a hippocampal neural prosthetic to facilitate human memory encoding and recall. J Neural Eng. 2018 06; 15(3):036014. Hampson RE, Song D, Robinson BS, Fetterhoff D, Dakos AS, Roeder BM, She X, Wicks RT, Witcher MR, Couture DE, Laxton AW, Munger-Clary H, Popli G, Sollman MJ, Whitlow CT, Marmarelis VZ, Berger TW, Deadwyler SA. PMID: 29589592; PMCID: PMC6576290.
      View in: PubMed   Mentions: 37     Fields:    Translation:Humans
    20. Designing Patient-Specific Optimal Neurostimulation Patterns for Seizure Suppression. Neural Comput. 2018 05; 30(5):1180-1208. Sandler RA, Geng K, Song D, Hampson RE, Witcher MR, Deadwyler SA, Berger TW, Marmarelis VZ. PMID: 29566356.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    21. Mechanism-Based and Input-Output Modeling of the Key Neuronal Connections and Signal Transformations in the CA3-CA1 Regions of the Hippocampus. Neural Comput. 2018 01; 30(1):149-183. Geng K, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW, Marmarelis VZ. PMID: 29064783.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    22. Cannabinoids disrupt memory encoding by functionally isolating hippocampal CA1 from CA3. PLoS Comput Biol. 2017 Jul; 13(7):e1005624. Sandler RA, Fetterhoff D, Hampson RE, Deadwyler SA, Marmarelis VZ. PMID: 28686594; PMCID: PMC5521875.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    23. Multiscale modeling in the clinic: diseases of the brain and nervous system. Brain Inform. 2017 Dec; 4(4):219-230. Lytton WW, Arle J, Bobashev G, Ji S, Klassen TL, Marmarelis VZ, Schwaber J, Sherif MA, Sanger TD. PMID: 28488252; PMCID: PMC5709279.
      View in: PubMed   Mentions: 10  
    24. Comparison of Model-Based Indices of Cerebral Autoregulation and Vasomotor Reactivity Using Transcranial Doppler versus Near-Infrared Spectroscopy in Patients with Amnestic Mild Cognitive Impairment. J Alzheimers Dis. 2017; 56(1):89-105. Marmarelis VZ, Shin DC, Tarumi T, Zhang R. PMID: 27911329; PMCID: PMC5240580.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    25. Sparse Large-Scale Nonlinear Dynamical Modeling of Human Hippocampus for Memory Prostheses. IEEE Trans Neural Syst Rehabil Eng. 2018 02; 26(2):272-280. Song D, Robinson BS, Hampson RE, Marmarelis VZ, Deadwyler SA, Berger TW. PMID: 28113595; PMCID: PMC5623111.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    26. Nonparametric Model of Smooth Muscle Force Production During Electrical Stimulation. J Comput Biol. 2017 Mar; 24(3):229-237. Cole M, Eikenberry S, Kato T, Sandler RA, Yamashiro SM, Marmarelis VZ. PMID: 27494114; PMCID: PMC5586159.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    27. Decoding memory features from hippocampal spiking activities using sparse classification models. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:1620-1623. Hampson RE, Robinson BS, Marmarelis VZ, Deadwyler SA, Berger TW. PMID: 28268639.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    28. Compartmental and Data-Based Modeling of Cerebral Hemodynamics: Nonlinear Analysis. IEEE Trans Biomed Eng. 2017 05; 64(5):1078-1088. Henley BC, Shin DC, Zhang R, Marmarelis VZ. PMID: 27411214; PMCID: PMC5592738.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    29. Methodology of Recurrent Laguerre-Volterra Network for Modeling Nonlinear Dynamic Systems. IEEE Trans Neural Netw Learn Syst. 2017 09; 28(9):2196-2208. Geng K, Marmarelis VZ. PMID: 27352401; PMCID: PMC5596897.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    30. A cognitive prosthesis for memory facilitation by closed-loop functional ensemble stimulation of hippocampal neurons in primate brain. Exp Neurol. 2017 01; 287(Pt 4):452-460. Deadwyler SA, Hampson RE, Song D, Opris I, Gerhardt GA, Marmarelis VZ, Berger TW. PMID: 27233622; PMCID: PMC5633045.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    31. Multiple-input nonlinear modelling of cerebral haemodynamics using spontaneous arterial blood pressure, end-tidal CO2 and heart rate measurements. Philos Trans A Math Phys Eng Sci. 2016 May 13; 374(2067). Marmarelis VZ, Mitsis GD, Shin DC, Zhang R. PMID: 27044989; PMCID: PMC4822442.
      View in: PubMed   Mentions: 10     Fields:    
    32. Compartmental and Data-Based Modeling of Cerebral Hemodynamics: Linear Analysis. IEEE Access. 2015; 3:2317-2332. Henley BC, Shin DC, Zhang R, Marmarelis VZ. PMID: 26900535; PMCID: PMC4756910.
      View in: PubMed   Mentions: 2  
    33. Distinguishing cognitive state with multifractal complexity of hippocampal interspike interval sequences. Front Syst Neurosci. 2015; 9:130. Fetterhoff D, Kraft RA, Sandler RA, Opris I, Sexton CA, Marmarelis VZ, Hampson RE, Deadwyler SA. PMID: 26441562; PMCID: PMC4585000.
      View in: PubMed   Mentions: 4  
    34. Hippocampal closed-loop modeling and implications for seizure stimulation design. J Neural Eng. 2015 Oct; 12(5):056017. Sandler RA, Song D, Hampson RE, Deadwyler SA, Berger TW, Marmarelis VZ. PMID: 26355815; PMCID: PMC5030843.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimals
    35. Principal Dynamic Mode Analysis of EEG Data for Assisting the Diagnosis of Alzheimer's Disease. IEEE J Transl Eng Health Med. 2015; 3:1800110. Kang Y, Escudero J, Shin D, Ifeachor E, Marmarelis V. PMID: 27170890; PMCID: PMC4848106.
      View in: PubMed   Mentions: 6     Fields:    
    36. Understanding spike-triggered covariance using Wiener theory for receptive field identification. J Vis. 2015; 15(9):16. Sandler RA, Marmarelis VZ. PMID: 26230978; PMCID: PMC4525694.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    37. Sparse generalized volterra model of human hippocampal spike train transformation for memory prostheses. Annu Int Conf IEEE Eng Med Biol Soc. 2015; 2015:3961-4. Song D, Robinson BS, Hampson RE, Marmarelis VZ, Deadwyler SA, Berger TW. PMID: 26737161.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    38. System identification of point-process neural systems using probability based Volterra kernels. J Neurosci Methods. 2015 Jan 30; 240:179-92. Sandler RA, Deadwyler SA, Hampson RE, Song D, Berger TW, Marmarelis VZ. PMID: 25479231; PMCID: PMC4286344.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    39. Principal dynamic mode analysis of the Hodgkin-Huxley equations. Int J Neural Syst. 2015 Mar; 25(2):1550001. Eikenberry SE, Marmarelis VZ. PMID: 25630480; PMCID: PMC4519014.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    40. Identification of functional synaptic plasticity from spiking activities using nonlinear dynamical modeling. J Neurosci Methods. 2015 Apr 15; 244:123-35. Song D, Chan RH, Robinson BS, Marmarelis VZ, Opris I, Hampson RE, Deadwyler SA, Berger TW. PMID: 25280984; PMCID: PMC4383743.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    41. Model-based asessment of an in-vivo predictive relationship from CA1 to CA3 in the rodent hippocampus. J Comput Neurosci. 2015 Feb; 38(1):89-103. Sandler RA, Song D, Hampson RE, Deadwyler SA, Berger TW, Marmarelis VZ. PMID: 25260381; PMCID: PMC4297547.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    42. Differentiation of BIRADS-4 small breast lesions via Multimodal Ultrasound Tomography. Eur Radiol. 2015 Feb; 25(2):410-8. Zografos G, Liakou P, Koulocheri D, Liovarou I, Sofras M, Hadjiagapis S, Orme M, Marmarelis V. PMID: 25218763.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    43. Extraction and restoration of hippocampal spatial memories with non-linear dynamical modeling. Front Syst Neurosci. 2014; 8:97. Song D, Harway M, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 24904318; PMCID: PMC4036140.
      View in: PubMed   Mentions: 5  
    44. Between-centre variability in transfer function analysis, a widely used method for linear quantification of the dynamic pressure-flow relation: the CARNet study. Med Eng Phys. 2014 May; 36(5):620-7. Meel-van den Abeelen AS, Simpson DM, Wang LJ, Slump CH, Zhang R, Tarumi T, Rickards CA, Payne S, Mitsis GD, Kostoglou K, Marmarelis V, Shin D, Tzeng YC, Ainslie PN, Gommer E, Müller M, Dorado AC, Smielewski P, Yelicich B, Puppo C, Liu X, Czosnyka M, Wang CY, Novak V, Panerai RB, Claassen JA. PMID: 24725709; PMCID: PMC4155942.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    45. Model-based physiomarkers of cerebral hemodynamics in patients with mild cognitive impairment. Med Eng Phys. 2014 May; 36(5):628-37. Marmarelis VZ, Shin DC, Orme ME, Zhang R. PMID: 24698010; PMCID: PMC4076301.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    46. Donor/recipient enhancement of memory in rat hippocampus. Front Syst Neurosci. 2013; 7:120. Deadwyler SA, Berger TW, Sweatt AJ, Song D, Chan RH, Opris I, Gerhardt GA, Marmarelis VZ, Hampson RE. PMID: 24421759; PMCID: PMC3872745.
      View in: PubMed   Mentions: 26  
    47. Facilitation of memory encoding in primate hippocampus by a neuroprosthesis that promotes task-specific neural firing. J Neural Eng. 2013 Dec; 10(6):066013. Hampson RE, Song D, Opris I, Santos LM, Shin DC, Gerhardt GA, Marmarelis VZ, Berger TW, Deadwyler SA. PMID: 24216292; PMCID: PMC3919468.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    48. Time-varying modeling of cerebral hemodynamics. IEEE Trans Biomed Eng. 2014 Mar; 61(3):694-704. Marmarelis VZ, Shin DC, Orme M. PMID: 24184697; PMCID: PMC4059681.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    49. On parsing the neural code in the prefrontal cortex of primates using principal dynamic modes. J Comput Neurosci. 2014 Jun; 36(3):321-37. Marmarelis VZ, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW. PMID: 23929124; PMCID: PMC3918491.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    50. Analysis of intravenous glucose tolerance test data using parametric and nonparametric modeling: application to a population at risk for diabetes. J Diabetes Sci Technol. 2013 Jul 01; 7(4):952-62. Marmarelis VZ, Shin DC, Zhang Y, Kautzky-Willer A, Pacini G, D'Argenio DZ. PMID: 23911176; PMCID: PMC3879759.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    51. Model-based quantification of cerebral hemodynamics as a physiomarker for Alzheimer's disease? Ann Biomed Eng. 2013 Nov; 41(11):2296-317. Marmarelis VZ, Shin DC, Orme ME, Zhang R. PMID: 23771298; PMCID: PMC3992829.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCTClinical Trials
    52. Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functions. J Comput Neurosci. 2013 Dec; 35(3):335-57. Song D, Wang H, Tu CY, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 23674048; PMCID: PMC3805829.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    53. Closed-loop dynamic modeling of cerebral hemodynamics. Ann Biomed Eng. 2013 May; 41(5):1029-48. Marmarelis VZ, Shin DC, Orme ME, Zhang R. PMID: 23292615; PMCID: PMC3625507.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCTClinical Trials
    54. Conformal ceramic electrodes that record glutamate release and corresponding neural activity in primate prefrontal cortex. Annu Int Conf IEEE Eng Med Biol Soc. 2013; 2013:5954-7. Hampson RE, Fuqua JL, Huettl PF, Opris I, Song D, Shin D, Marmarelis VZ, Berger TW, Gerhardt GA, Deadwyler SA. PMID: 24111095.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    55. Design of optimal stimulation patterns for neuronal ensembles based on Volterra-type hierarchical modeling. J Neural Eng. 2012 Dec; 9(6):066003. Marmarelis VZ, Shin DC, Hampson RE, Deadwyler SA, Song D, Berger TW. PMID: 23075519; PMCID: PMC3538881.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    56. Novel technology of multimodal ultrasound tomography detects breast lesions. Eur Radiol. 2013 Mar; 23(3):673-83. Zografos G, Koulocheri D, Liakou P, Sofras M, Hadjiagapis S, Orme M, Marmarelis V. PMID: 22983317.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    57. Facilitation and restoration of cognitive function in primate prefrontal cortex by a neuroprosthesis that utilizes minicolumn-specific neural firing. J Neural Eng. 2012 Oct; 9(5):056012. Hampson RE, Gerhardt GA, Marmarelis V, Song D, Opris I, Santos L, Berger TW, Deadwyler SA. PMID: 22976769; PMCID: PMC3505670.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    58. Role of the hippocampus in memory formation: restorative encoding memory integration neural device as a cognitive neural prosthesis. IEEE Pulse. 2012 Sep-Oct; 3(5):17-22. Berger T, Song D, Chan R, Shin D, Marmarelis V, Hampson R, Sweatt A, Heck C, Liu C, Wills J, Lacoss J, Granacki J, Gerhardt G, Deadwyler S. PMID: 23014702.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    59. A nonlinear autoregressive Volterra model of the Hodgkin-Huxley equations. J Comput Neurosci. 2013 Feb; 34(1):163-83. Eikenberry SE, Marmarelis VZ. PMID: 22878687.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    60. Nonlinear modeling of dynamic interactions within neuronal ensembles using Principal Dynamic Modes. J Comput Neurosci. 2013 Feb; 34(1):73-87. Marmarelis VZ, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW. PMID: 23011343; PMCID: PMC3531564.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    61. Southern California: a hotbed of biomedical engineering: nine bioengineers describe their research and why Southern California has the biotech market cornered. IEEE Pulse. 2012 Jul; 3(4):14-21. Berger T, Meng E, George S, Khoo M, Marmarelis V, McCulloch A, Cauwenberghs G, Ohno-Machado L, Schultz J, Johnson JP. PMID: 23008840.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    62. Closing the loop for memory prosthesis: detecting the role of hippocampal neural ensembles using nonlinear models. IEEE Trans Neural Syst Rehabil Eng. 2012 Jul; 20(4):510-25. Hampson RE, Song D, Chan RH, Sweatt AJ, Riley MR, Goonawardena AV, Marmarelis VZ, Gerhardt GA, Berger TW, Deadwyler SA. PMID: 22498704; PMCID: PMC3395725.
      View in: PubMed   Mentions: 16     Fields:    Translation:Animals
    63. A nonlinear model for hippocampal cognitive prosthesis: memory facilitation by hippocampal ensemble stimulation. IEEE Trans Neural Syst Rehabil Eng. 2012 Mar; 20(2):184-97. Hampson RE, Song D, Chan RH, Sweatt AJ, Riley MR, Gerhardt GA, Shin DC, Marmarelis VZ, Berger TW, Deadwyler SA. PMID: 22438334; PMCID: PMC3397311.
      View in: PubMed   Mentions: 23     Fields:    Translation:Animals
    64. A hippocampal cognitive prosthesis: multi-input, multi-output nonlinear modeling and VLSI implementation. IEEE Trans Neural Syst Rehabil Eng. 2012 Mar; 20(2):198-211. Berger TW, Song D, Chan RH, Marmarelis VZ, LaCoss J, Wills J, Hampson RE, Deadwyler SA, Granacki JJ. PMID: 22438335; PMCID: PMC3395724.
      View in: PubMed   Mentions: 42     Fields:    Translation:Animals
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    66. Functional connectivity between Layer 2/3 and Layer 5 neurons in prefrontal cortex of nonhuman primates during a delayed match-to-sample task. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:2555-8. Song D, Opris I, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 23366446.
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    67. Relationships between spike-free local field potentials and spike timing in human temporal cortex. J Neurophysiol. 2012 Apr; 107(7):1808-21. Zanos S, Zanos TP, Marmarelis VZ, Ojemann GA, Fetz EE. PMID: 22157112; PMCID: PMC3331669.
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    68. Editorial: TBME Letters special issue on multiscale modeling and analysis in computational biology and medicine--part-2. IEEE Trans Biomed Eng. 2011 Dec; 58(12):3434-9. Coatrieux JL, Frangi AF, Peng GC, D'Argenio DZ, Marmarelis VZ, Michailova A. PMID: 22105190; PMCID: PMC3958427.
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    70. Memory encoding in hippocampal ensembles is negatively influenced by cannabinoid CB1 receptors. Behav Pharmacol. 2011 Aug; 22(4):335-46. Hampson RE, Sweatt AJ, Goonawardena AV, Song D, Chan RH, Marmarelis VZ, Berger TW, Deadwyler SA. PMID: 21558844; PMCID: PMC3135765.
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    71. A cortical neural prosthesis for restoring and enhancing memory. J Neural Eng. 2011 Aug; 8(4):046017. Berger TW, Hampson RE, Song D, Goonawardena A, Marmarelis VZ, Deadwyler SA. PMID: 21677369; PMCID: PMC3141091.
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    72. Diagnostic biomarkers for Alzheimer's disease using dynamic nonlinear models based on Principal Dynamic Modes. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:7119-22. Marmarelis VZ, Shin DC, Diaz-Arrastia R, Zhang R. PMID: 22255979.
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    73. Estimation and statistical validation of event-invariant nonlinear dynamic models of hippocampal CA3-CA1 population activities. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:3330-3. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 22255052.
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    75. A switching control strategy for the attenuation of blood glucose disturbances. Optim Control Appl Methods. 2011; 32(2):185-195. Markakis MG, Mitsis GD, Papavassilopoulos GP, Ioannou PA, Marmarelis VZ. PMID: 21516241; PMCID: PMC3081193.
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    80. Nonlinear modeling of the dynamic effects of infused insulin on glucose: comparison of compartmental with Volterra models. IEEE Trans Biomed Eng. 2009 Oct; 56(10):2347-58. Mitsis GD, Markakis MG, Marmarelis VZ. PMID: 19497805; PMCID: PMC2821106.
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    81. Nonlinear modeling of neural population dynamics for hippocampal prostheses. Neural Netw. 2009 Nov; 22(9):1340-51. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 19501484; PMCID: PMC2821165.
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    82. Sparse generalized Laguerre-Volterra model of neural population dynamics. Annu Int Conf IEEE Eng Med Biol Soc. 2009; 2009:4555-8. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 19963836.
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    84. Parametric and non-parametric modeling of short-term synaptic plasticity. Part I: Computational study. J Comput Neurosci. 2009 Feb; 26(1):1-19. Song D, Marmarelis VZ, Berger TW. PMID: 18506609; PMCID: PMC2770349.
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    86. Differentiation of cancerous lesions in excised human breast specimens using multiband attenuation profiles from ultrasonic transmission tomography. J Ultrasound Med. 2008 Mar; 27(3):435-51. Jeong JW, Shin DC, Do SH, Blanco C, Klipfel NE, Holmes DR, Hovanessian-Larsen LJ, Marmarelis VZ. PMID: 18314522.
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    87. Modeling the nonlinear dynamic interactions of afferent pathways in the dentate gyrus of the hippocampus. Ann Biomed Eng. 2008 May; 36(5):852-64. Dimoka A, Courellis SH, Marmarelis VZ, Berger TW. PMID: 18299993; PMCID: PMC2749714.
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    88. Modeling the nonlinear properties of the in vitro hippocampal perforant path-dentate system using multielectrode array technology. IEEE Trans Biomed Eng. 2008 Feb; 55(2 Pt 1):693-702. Dimoka A, Courellis SH, Gholmieh GI, Marmarelis VZ, Berger TW. PMID: 18270006; PMCID: PMC2749727.
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    90. Model Predictive Control of blood glucose in Type 1 diabetes: the Principal Dynamic Modes approach. Annu Int Conf IEEE Eng Med Biol Soc. 2008; 2008:5466-9. Markakis MG, Mitsis GD, Papavassilopoulos GP, Marmarelis VZ. PMID: 19163954.
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    92. Predicting EMG with generalized Volterra kernel model. Annu Int Conf IEEE Eng Med Biol Soc. 2008; 2008:201-4. Song D, Hendrickson P, Marmarelis VZ, Aguayo J, He J, Loeb GE, Berger TW. PMID: 19162628.
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    93. Nonlinear dynamic modeling of spike train transformations for hippocampal-cortical prostheses. IEEE Trans Biomed Eng. 2007 Jun; 54(6 Pt 1):1053-66. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 17554824.
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    94. Nonlinear dynamic model of CA1 short-term plasticity using random impulse train stimulation. Ann Biomed Eng. 2007 May; 35(5):847-57. Gholmieh G, Courellis S, Marmarelis V, Berger T. PMID: 17380396.
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    97. Nonlinear, multiple-input modeling of cerebral hemodynamics during baseline and hypercapnia in young and post-menopausal women. Annu Int Conf IEEE Eng Med Biol Soc. 2007; 2007:2855-8. Mitsis GD, Debert CT, Hajo MI, Marmarelis VZ, Poulin MJ. PMID: 18002590.
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    98. Improving bioassay sensitivity for neurotoxins detection using volterra based third order nonlinear analysis. Annu Int Conf IEEE Eng Med Biol Soc. 2007; 2007:2261-4. Gholmieh GI, Courellis SH, Fluster D, Chen LS, Marmarelis VZ, Baudry M, Berger TW. PMID: 18002441.
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    99. Principal dynamic mode analysis of action potential firing in a spider mechanoreceptor. Biol Cybern. 2007 Jan; 96(1):113-27. Mitsis GD, French AS, Höger U, Courellis S, Marmarelis VZ. PMID: 17021828.
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    100. Segmentation methodology for automated classification and differentiation of soft tissues in multiband images of high-resolution ultrasonic transmission tomography. IEEE Trans Med Imaging. 2006 Aug; 25(8):1068-78. Jeong JW, Shin DC, Do S, Marmarelis VZ. PMID: 16894999.
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    101. Cerebral hemodynamics during orthostatic stress assessed by nonlinear modeling. J Appl Physiol (1985). 2006 Jul; 101(1):354-66. Mitsis GD, Zhang R, Levine BD, Marmarelis VZ. PMID: 16514006.
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    105. Modeling hippocampal nonlinear dynamic transformations with principal dynamic modes. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:2300-3. Courellis SH, Zanos TP, Hsiao MC, Hampson RE, Deadwyler SA, Marmarelis VZ, Berger TW. PMID: 17946509.
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    106. Physiologically plausible stochastic nonlinear kernel models of spike train to spike train transformation. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:6129-32. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. PMID: 17946359.
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    107. A multi-input modeling approach to quantify hippocampal nonlinear dynamic transformations. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:4967-70. Zanos TP, Courellis SH, Hampson RE, Deadwyler SA, Marmarelis VZ, Berger TW. PMID: 17946273.
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    108. Interaction of short-term neuronal plasticity and synaptic plasticity revealed by nonlinear systems analysis in dentate granule cells. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:5543-6. Xie X, Song D, Wang Z, Marmarelis VZ, Berger TW. PMID: 17946314.
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    109. Restoring lost cognitive function. IEEE Eng Med Biol Mag. 2005 Sep-Oct; 24(5):30-44. Berger TW, Ahuja A, Courellis SH, Deadwyler SA, Erinjippurath G, Gerhardt GA, Gholmieh G, Granacki JJ, Hampson R, Hsaio MC, LaCoss J, Marmarelis VZ, Nasiatka P, Srinivasan V, Song D, Tanguay AR, Wills J. PMID: 16248115.
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    110. General methodology for nonlinear modeling of neural systems with Poisson point-process inputs. Math Biosci. 2005 Jul; 196(1):1-13. Marmarelis VZ, Berger TW. PMID: 15963534.
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    112. An analytical model of multilayer ultrasonic transducers with an inversion layer. IEEE Trans Ultrason Ferroelectr Freq Control. 2005 Mar; 52(3):469-79. Huang C, Marmarelis VZ, Zhou Q, Shung KK. PMID: 15857055.
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    116. A modeling paradigm incorporating parametric and non-parametric methods. Conf Proc IEEE Eng Med Biol Soc. 2004; 2006:647-50. Song D, Wang Z, Marmarelis VZ, Berger TW. PMID: 17271760.
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    118. Detection and classification of neurotoxins using a novel short-term plasticity quantification method. Biosens Bioelectron. 2003 Oct 15; 18(12):1467-78. Gholmieh G, Courellis S, Fakheri S, Cheung E, Marmarelis V, Baudry M, Berger T. PMID: 12941562.
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    119. An efficient method for studying short-term plasticity with random impulse train stimuli. J Neurosci Methods. 2002 Dec 15; 121(2):111-27. Gholmieh G, Courellis S, Marmarelis V, Berger T. PMID: 12468002.
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    120. Modeling of nonlinear physiological systems with fast and slow dynamics. II. Application to cerebral autoregulation. Ann Biomed Eng. 2002 Apr; 30(4):555-65. Mitsis GD, Zhang R, Levine BD, Marmarelis VZ. PMID: 12086006.
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    121. A biosensor for detecting changes in cognitive processing based on nonlinear systems analysis. Biosens Bioelectron. 2001 Sep; 16(7-8):491-501. Gholmieh G, Soussou W, Courellis S, Marmarelis V, Berger T, Baudry M. PMID: 11544043.
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    122. Laser induced fluorescence attenuation spectroscopy: detection of hypoxia. IEEE Trans Biomed Eng. 2000 Mar; 47(3):301-12. Shehada RE, Marmarelis VZ, Mansour HN, Grundfest WS. PMID: 10743771.
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    123. A novel network for nonlinear modeling of neural systems with arbitrary point-process inputs. Neural Netw. 2000 Mar; 13(2):255-66. Alataris K, Berger TW, Marmarelis VZ. PMID: 10935764.
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    125. Principal dynamic mode analysis of nonlinear transduction in a spider mechanoreceptor. Ann Biomed Eng. 1999 May-Jun; 27(3):391-402. Marmarelis VZ, Juusola M, French AS. PMID: 10374731.
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    128. Nonlinear system analysis of renal autoregulation in normotensive and hypertensive rats. IEEE Trans Biomed Eng. 1998 Mar; 45(3):342-53. Chon KH, Chen YM, Holstein-Rathlou NH, Marmarelis VZ. PMID: 9509750.
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    133. Nonlinear neuronal mode analysis of action potential encoding in the cockroach tactile spine neuron. Biol Cybern. 1995 Oct; 73(5):425-30. French AS, Marmarelis VZ. PMID: 7578479.
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    134. Detection of interactions between myogenic and TGF mechanisms using nonlinear analysis. Am J Physiol. 1994 Jul; 267(1 Pt 2):F160-73. Chon KH, Chen YM, Marmarelis VZ, Marsh DJ, Holstein-Rathlou NH. PMID: 8048557.
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    143. Quantifying deficiencies associated with Parkinson's disease by use of time-series analysis. Electroencephalogr Clin Neurophysiol. 1988 Jan; 69(1):24-33. Abdel-Malek A, Markham CH, Marmarelis PZ, Marmarelis VZ. PMID: 2448118.
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    146. A linear spatio-temporal model of the light-to-bipolar cell system and its response characteristics to moving bars. Biol Cybern. 1987; 57(6):357-63. Curlander JC, Marmarelis VZ. PMID: 3435724.
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    147. Applications of minimum-order Wiener modeling to retinal ganglion cell spatiotemporal dynamics. Biol Cybern. 1987; 57(4-5):241-7. Citron MC, Marmarelis VZ. PMID: 3689833.
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    150. A family of quasi-white random signals and its optimal use in biological system identification. Part I: theory. Biol Cybern. 1977 Jul 08; 27(1):49-56. Marmarelis VZ. PMID: 889957.
      View in: PubMed   Mentions: 9     Fields:    Translation:PHPublic Health
    151. A family of quasi-white random signals and its optimal use in biological system identification. Part II: application to the photoreceptor of Calliphora erythrocephala. Biol Cybern. 1977 Jul 08; 27(1):57-62. Marmarelis VZ, McCann GD. PMID: 889958.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCellsPHPublic Health
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