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Vasilis Marmarelis, PhD

TitleProfessor Of Biomedical Engineering And Electrical Engineering - Systems
InstitutionUniversity of Southern California
DepartmentBiomedical Simulations Resource
AddressDRB 160
University Park Campus
Los Angeles CA 90089-1111
Phone+1 213 740 0841
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    Collapse Overview
    Vasilis Z. Marmarelis received his diploma in Electrical and Mechanical Engineering from the National Technical University of Athens in 1972 and his M.S. and Ph.D. in Engineering Science (Bio-Information Systems) from the California Institute of Technology in 1973 and 1976, respectively. He was Simon Ramo Lecturer and Research Fellow at the California Institute of Technology from 1976 to 1978. In September 1978, he joined the faculty of the Biomedical and Electrical Engineering Departments at USC, where he is currently Professor and Co-Director of the Biomedical Simulations Resource (BMSR), a research center dedicated to modeling and simulation of physiological systems that has been funded by the NIH through multi-million dollar grants since 1985. Dr. Marmarelis served as Chairman of the Biomedical Engineering Department from 1990 to 1996 and he is a Fellow of the IEEE and the AIMBE.


    Collapse Research 
    Collapse Research Activities and Funding
    Biomedical Simulations Resource (BMSR)
    NIH/NIBIB P41EB001978Sep 30, 1997 - Aug 31, 2018
    Role: Co-Principal Investigator
    BIOMEDICAL SIMULATIONS RESOURCE
    NIH/NCRR P41RR001861Sep 30, 1985 - Aug 31, 2003
    Role: Principal Investigator

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Hampson RE, Song D, Robinson BS, Fetterhoff D, Dakos AS, Roeder BM, She X, Wicks RT, Witcher MR, Couture DE, Laxton AW, Munger-Clary H, Popli G, Sollman MJ, Whitlow CT, Marmarelis VZ, Berger TW, Deadwyler SA. Developing a hippocampal neural prosthetic to facilitate human memory encoding and recall. J Neural Eng. 2018 Jun; 15(3):036014. PMID: 29589592.
      View in: PubMed
    2. Sandler RA, Geng K, Song D, Hampson RE, Witcher MR, Deadwyler SA, Berger TW, Marmarelis VZ. Designing Patient-Specific Optimal Neurostimulation Patterns for Seizure Suppression. Neural Comput. 2018 May; 30(5):1180-1208. PMID: 29566356.
      View in: PubMed
    3. Geng K, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW, Marmarelis VZ. Mechanism-Based and Input-Output Modeling of the Key Neuronal Connections and Signal Transformations in the CA3-CA1 Regions of the Hippocampus. Neural Comput. 2018 Jan; 30(1):149-183. PMID: 29064783.
      View in: PubMed
    4. Sandler RA, Fetterhoff D, Hampson RE, Deadwyler SA, Marmarelis VZ. Cannabinoids disrupt memory encoding by functionally isolating hippocampal CA1 from CA3. PLoS Comput Biol. 2017 Jul; 13(7):e1005624. PMID: 28686594.
      View in: PubMed
    5. Lytton WW, Arle J, Bobashev G, Ji S, Klassen TL, Marmarelis VZ, Schwaber J, Sherif MA, Sanger TD. Multiscale modeling in the clinic: diseases of the brain and nervous system. Brain Inform. 2017 Dec; 4(4):219-230. PMID: 28488252.
      View in: PubMed
    6. Marmarelis VZ, Shin DC, Tarumi T, Zhang R. Comparison of Model-Based Indices of Cerebral Autoregulation and Vasomotor Reactivity Using Transcranial Doppler versus Near-Infrared Spectroscopy in Patients with Amnestic Mild Cognitive Impairment. J Alzheimers Dis. 2017; 56(1):89-105. PMID: 27911329.
      View in: PubMed
    7. Song D, Robinson BS, Hampson RE, Marmarelis VZ, Deadwyler SA, Berger TW. Sparse Large-Scale Nonlinear Dynamical Modeling of Human Hippocampus for Memory Prostheses. IEEE Trans Neural Syst Rehabil Eng. 2018 Feb; 26(2):272-280. PMID: 28113595.
      View in: PubMed
    8. Cole M, Eikenberry S, Kato T, Sandler RA, Yamashiro SM, Marmarelis VZ. Nonparametric Model of Smooth Muscle Force Production During Electrical Stimulation. J Comput Biol. 2017 Mar; 24(3):229-237. PMID: 27494114.
      View in: PubMed
    9. Decoding memory features from hippocampal spiking activities using sparse classification models. Conf Proc IEEE Eng Med Biol Soc. 2016 08; 2016:1620-1623. PMID: 28268639.
      View in: PubMed
    10. Henley BC, Shin DC, Zhang R, Marmarelis VZ. Compartmental and Data-Based Modeling of Cerebral Hemodynamics: Nonlinear Analysis. IEEE Trans Biomed Eng. 2017 05; 64(5):1078-1088. PMID: 27411214.
      View in: PubMed
    11. Geng K, Marmarelis VZ. Methodology of Recurrent Laguerre-Volterra Network for Modeling Nonlinear Dynamic Systems. IEEE Trans Neural Netw Learn Syst. 2017 Sep; 28(9):2196-2208. PMID: 27352401.
      View in: PubMed
    12. Deadwyler SA, Hampson RE, Song D, Opris I, Gerhardt GA, Marmarelis VZ, Berger TW. A cognitive prosthesis for memory facilitation by closed-loop functional ensemble stimulation of hippocampal neurons in primate brain. Exp Neurol. 2017 01; 287(Pt 4):452-460. PMID: 27233622.
      View in: PubMed
    13. Fetterhoff D, Kraft RA, Sandler RA, Opris I, Sexton CA, Marmarelis VZ, Hampson RE, Deadwyler SA. Distinguishing cognitive state with multifractal complexity of hippocampal interspike interval sequences. Front Syst Neurosci. 2015; 9:130. PMID: 26441562; PMCID: PMC4585000.
    14. Sandler RA, Song D, Hampson RE, Deadwyler SA, Berger TW, Marmarelis VZ. Hippocampal closed-loop modeling and implications for seizure stimulation design. J Neural Eng. 2015 Oct; 12(5):056017. PMID: 26355815.
      View in: PubMed
    15. Kang Y, Escudero J, Shin D, Ifeachor E, Marmarelis V. Principal Dynamic Mode Analysis of EEG Data for Assisting the Diagnosis of Alzheimer's Disease. IEEE J Transl Eng Health Med. 2015; 3:1800110. PMID: 27170890; PMCID: PMC4848106.
    16. Sandler RA, Marmarelis VZ. Understanding spike-triggered covariance using Wiener theory for receptive field identification. J Vis. 2015; 15(9):16. PMID: 26230978; PMCID: PMC4525694.
    17. Song D, Robinson BS, Hampson RE, Marmarelis VZ, Deadwyler SA, Berger TW. Sparse generalized volterra model of human hippocampal spike train transformation for memory prostheses. Conf Proc IEEE Eng Med Biol Soc. 2015; 2015:3961-4. PMID: 26737161.
      View in: PubMed
    18. Sandler RA, Deadwyler SA, Hampson RE, Song D, Berger TW, Marmarelis VZ. System identification of point-process neural systems using probability based Volterra kernels. J Neurosci Methods. 2015 Jan 30; 240:179-92. PMID: 25479231; PMCID: PMC4286344.
    19. Eikenberry SE, Marmarelis VZ. Principal dynamic mode analysis of the Hodgkin-Huxley equations. Int J Neural Syst. 2015 Mar; 25(2):1550001. PMID: 25630480; PMCID: PMC4519014.
    20. Song D, Chan RH, Robinson BS, Marmarelis VZ, Opris I, Hampson RE, Deadwyler SA, Berger TW. Identification of functional synaptic plasticity from spiking activities using nonlinear dynamical modeling. J Neurosci Methods. 2015 Apr 15; 244:123-35. PMID: 25280984; PMCID: PMC4383743.
    21. Sandler RA, Song D, Hampson RE, Deadwyler SA, Berger TW, Marmarelis VZ. Model-based asessment of an in-vivo predictive relationship from CA1 to CA3 in the rodent hippocampus. J Comput Neurosci. 2015 Feb; 38(1):89-103. PMID: 25260381; PMCID: PMC4297547.
    22. Song D, Harway M, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. Extraction and restoration of hippocampal spatial memories with non-linear dynamical modeling. Front Syst Neurosci. 2014; 8:97. PMID: 24904318; PMCID: PMC4036140.
    23. Meel-van den Abeelen AS, Simpson DM, Wang LJ, Slump CH, Zhang R, Tarumi T, Rickards CA, Payne S, Mitsis GD, Kostoglou K, Marmarelis V, Shin D, Tzeng YC, Ainslie PN, Gommer E, Müller M, Dorado AC, Smielewski P, Yelicich B, Puppo C, Liu X, Czosnyka M, Wang CY, Novak V, Panerai RB, Claassen JA. Between-centre variability in transfer function analysis, a widely used method for linear quantification of the dynamic pressure-flow relation: the CARNet study. Med Eng Phys. 2014 May; 36(5):620-7. PMID: 24725709; PMCID: PMC4155942.
    24. Marmarelis VZ, Shin DC, Orme ME, Zhang R. Model-based physiomarkers of cerebral hemodynamics in patients with mild cognitive impairment. Med Eng Phys. 2014 May; 36(5):628-37. PMID: 24698010.
      View in: PubMed
    25. Deadwyler SA, Berger TW, Sweatt AJ, Song D, Chan RH, Opris I, Gerhardt GA, Marmarelis VZ, Hampson RE. Donor/recipient enhancement of memory in rat hippocampus. Front Syst Neurosci. 2013; 7:120. PMID: 24421759; PMCID: PMC3872745.
    26. Hampson RE, Song D, Opris I, Santos LM, Shin DC, Gerhardt GA, Marmarelis VZ, Berger TW, Deadwyler SA. Facilitation of memory encoding in primate hippocampus by a neuroprosthesis that promotes task-specific neural firing. J Neural Eng. 2013 Dec; 10(6):066013. PMID: 24216292; PMCID: PMC3919468.
    27. Marmarelis VZ, Shin DC, Orme M. Time-varying modeling of cerebral hemodynamics. IEEE Trans Biomed Eng. 2014 Mar; 61(3):694-704. PMID: 24184697; PMCID: PMC4059681.
    28. Marmarelis VZ, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW. On parsing the neural code in the prefrontal cortex of primates using principal dynamic modes. J Comput Neurosci. 2014 Jun; 36(3):321-37. PMID: 23929124; PMCID: PMC3918491.
    29. Marmarelis VZ, Shin DC, Zhang Y, Kautzky-Willer A, Pacini G, D'Argenio DZ. Analysis of intravenous glucose tolerance test data using parametric and nonparametric modeling: application to a population at risk for diabetes. J Diabetes Sci Technol. 2013 Jul 01; 7(4):952-62. PMID: 23911176; PMCID: PMC3879759.
    30. Marmarelis VZ, Shin DC, Orme ME, Zhang R. Model-based quantification of cerebral hemodynamics as a physiomarker for Alzheimer's disease? Ann Biomed Eng. 2013 Nov; 41(11):2296-317. PMID: 23771298; PMCID: PMC3992829.
    31. Song D, Wang H, Tu CY, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functions. J Comput Neurosci. 2013 Dec; 35(3):335-57. PMID: 23674048; PMCID: PMC3805829.
    32. Marmarelis VZ, Shin DC, Orme ME, Zhang R. Closed-loop dynamic modeling of cerebral hemodynamics. Ann Biomed Eng. 2013 May; 41(5):1029-48. PMID: 23292615; PMCID: PMC3625507.
    33. Hampson RE, Fuqua JL, Huettl PF, Opris I, Song D, Shin D, Marmarelis VZ, Berger TW, Gerhardt GA, Deadwyler SA. Conformal ceramic electrodes that record glutamate release and corresponding neural activity in primate prefrontal cortex. Conf Proc IEEE Eng Med Biol Soc. 2013; 2013:5954-7. PMID: 24111095.
      View in: PubMed
    34. Marmarelis VZ, Shin DC, Hampson RE, Deadwyler SA, Song D, Berger TW. Design of optimal stimulation patterns for neuronal ensembles based on Volterra-type hierarchical modeling. J Neural Eng. 2012 Dec; 9(6):066003. PMID: 23075519; PMCID: PMC3538881.
    35. Hampson RE, Gerhardt GA, Marmarelis V, Song D, Opris I, Santos L, Berger TW, Deadwyler SA. Facilitation and restoration of cognitive function in primate prefrontal cortex by a neuroprosthesis that utilizes minicolumn-specific neural firing. J Neural Eng. 2012 Oct; 9(5):056012. PMID: 22976769; PMCID: PMC3505670.
    36. Berger T, Song D, Chan R, Shin D, Marmarelis V, Hampson R, Sweatt A, Heck C, Liu C, Wills J, Lacoss J, Granacki J, Gerhardt G, Deadwyler S. Role of the hippocampus in memory formation: restorative encoding memory integration neural device as a cognitive neural prosthesis. IEEE Pulse. 2012 Sep-Oct; 3(5):17-22. PMID: 23014702.
      View in: PubMed
    37. Eikenberry SE, Marmarelis VZ. A nonlinear autoregressive Volterra model of the Hodgkin-Huxley equations. J Comput Neurosci. 2013 Feb; 34(1):163-83. PMID: 22878687.
      View in: PubMed
    38. Marmarelis VZ, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW. Nonlinear modeling of dynamic interactions within neuronal ensembles using Principal Dynamic Modes. J Comput Neurosci. 2013 Feb; 34(1):73-87. PMID: 23011343; PMCID: PMC3531564.
    39. Berger T, Meng E, George S, Khoo M, Marmarelis V, McCulloch A, Cauwenberghs G, Ohno-Machado L, Schultz J, Johnson JP. Southern California: a hotbed of biomedical engineering: nine bioengineers describe their research and why Southern California has the biotech market cornered. IEEE Pulse. 2012 Jul; 3(4):14-21. PMID: 23008840.
      View in: PubMed
    40. Hampson RE, Song D, Chan RH, Sweatt AJ, Riley MR, Goonawardena AV, Marmarelis VZ, Gerhardt GA, Berger TW, Deadwyler SA. Closing the loop for memory prosthesis: detecting the role of hippocampal neural ensembles using nonlinear models. IEEE Trans Neural Syst Rehabil Eng. 2012 Jul; 20(4):510-25. PMID: 22498704; PMCID: PMC3395725.
    41. Hampson RE, Song D, Chan RH, Sweatt AJ, Riley MR, Gerhardt GA, Shin DC, Marmarelis VZ, Berger TW, Deadwyler SA. A nonlinear model for hippocampal cognitive prosthesis: memory facilitation by hippocampal ensemble stimulation. IEEE Trans Neural Syst Rehabil Eng. 2012 Mar; 20(2):184-97. PMID: 22438334; PMCID: PMC3397311.
    42. Berger TW, Song D, Chan RH, Marmarelis VZ, LaCoss J, Wills J, Hampson RE, Deadwyler SA, Granacki JJ. A hippocampal cognitive prosthesis: multi-input, multi-output nonlinear modeling and VLSI implementation. IEEE Trans Neural Syst Rehabil Eng. 2012 Mar; 20(2):198-211. PMID: 22438335; PMCID: PMC3395724.
    43. Song D, Opris I, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. Functional connectivity between Layer 2/3 and Layer 5 neurons in prefrontal cortex of nonhuman primates during a delayed match-to-sample task. Conf Proc IEEE Eng Med Biol Soc. 2012; 2012:2555-8. PMID: 23366446.
      View in: PubMed
    44. Ghaderi VS, Roach S, Song D, Marmarelis VZ, Choma J, Berger TW. Analog low-power hardware implementation of a Laguerre-Volterra model of intracellular subthreshold neuronal activity. Conf Proc IEEE Eng Med Biol Soc. 2012; 2012:767-70. PMID: 23366005.
      View in: PubMed
    45. Zanos S, Zanos TP, Marmarelis VZ, Ojemann GA, Fetz EE. Relationships between spike-free local field potentials and spike timing in human temporal cortex. J Neurophysiol. 2012 Apr; 107(7):1808-21. PMID: 22157112; PMCID: PMC3331669.
    46. Coatrieux JL, Frangi AF, Peng GC, D'Argenio DZ, Marmarelis VZ, Michailova A. Editorial: TBME Letters special issue on multiscale modeling and analysis in computational biology and medicine--part-2. IEEE Trans Biomed Eng. 2011 Dec; 58(12):3434-9. PMID: 22105190; PMCID: PMC3958427.
    47. Frangi AF, Coatrieux JL, Peng GC, D'Argenio DZ, Marmarelis VZ, Michailova A. Editorial: Special issue on multiscale modeling and analysis in computational biology and medicine--part-1. IEEE Trans Biomed Eng. 2011 Oct; 58(10):2936-42. PMID: 21937299.
      View in: PubMed
    48. Hampson RE, Sweatt AJ, Goonawardena AV, Song D, Chan RH, Marmarelis VZ, Berger TW, Deadwyler SA. Memory encoding in hippocampal ensembles is negatively influenced by cannabinoid CB1 receptors. Behav Pharmacol. 2011 Aug; 22(4):335-46. PMID: 21558844; PMCID: PMC3135765.
    49. Berger TW, Hampson RE, Song D, Goonawardena A, Marmarelis VZ, Deadwyler SA. A cortical neural prosthesis for restoring and enhancing memory. J Neural Eng. 2011 Aug; 8(4):046017. PMID: 21677369; PMCID: PMC3141091.
    50. Marmarelis VZ, Shin DC, Diaz-Arrastia R, Zhang R. Diagnostic biomarkers for Alzheimer's disease using dynamic nonlinear models based on Principal Dynamic Modes. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:7119-22. PMID: 22255979.
      View in: PubMed
    51. Marmarelis VZ, Shin DC, Song D, Hampson RE, Deadwyler SA, Berger TW. Dynamic nonlinear modeling of interactions between neuronal ensembles using principal dynamic modes. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:3334-7. PMID: 22255053.
      View in: PubMed
    52. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. Estimation and statistical validation of event-invariant nonlinear dynamic models of hippocampal CA3-CA1 population activities. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:3330-3. PMID: 22255052.
      View in: PubMed
    53. Markakis MG, Mitsis GD, Papavassilopoulos GP, Ioannou PA, Marmarelis VZ. A switching control strategy for the attenuation of blood glucose disturbances. Optim Control Appl Methods. 2011; 32(2):185-195. PMID: 21516241.
      View in: PubMed
    54. Berger TW, Song D, Chan RH, Marmarelis VZ. The Neurobiological Basis of Cognition: Identification by Multi-Input, Multioutput Nonlinear Dynamic Modeling: A method is proposed for measuring and modeling human long-term memory formation by mathematical analysis and computer simulation of nerve-cell dynamics. Proc IEEE Inst Electr Electron Eng. 2010 Mar 04; 98(3):356-374. PMID: 20700470.
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    55. Mitsis GD, Zhang R, Levine BD, Tzanalaridou E, Katritsis DG, Marmarelis VZ. Autonomic neural control of cerebral hemodynamics. IEEE Eng Med Biol Mag. 2009 Nov-Dec; 28(6):54-62. PMID: 19914889; PMCID: PMC2917725.
    56. Marmarelis VZ, Zanos TP, Berger TW. Boolean modeling of neural systems with point-process inputs and outputs. Part I: theory and simulations. Ann Biomed Eng. 2009 Aug; 37(8):1654-67. PMID: 19517238; PMCID: PMC2917726.
    57. Zanos TP, Hampson RE, Deadwyler SE, Berger TW, Marmarelis VZ. Boolean modeling of neural systems with point-process inputs and outputs. Part II: Application to the rat hippocampus. Ann Biomed Eng. 2009 Aug; 37(8):1668-82. PMID: 19499341; PMCID: PMC2917724.
    58. Mitsis GD, Markakis MG, Marmarelis VZ. Nonlinear modeling of the dynamic effects of infused insulin on glucose: comparison of compartmental with Volterra models. IEEE Trans Biomed Eng. 2009 Oct; 56(10):2347-58. PMID: 19497805; PMCID: PMC2821106.
    59. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. Nonlinear modeling of neural population dynamics for hippocampal prostheses. Neural Netw. 2009 Nov; 22(9):1340-51. PMID: 19501484; PMCID: PMC2821165.
    60. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. Sparse generalized Laguerre-Volterra model of neural population dynamics. Conf Proc IEEE Eng Med Biol Soc. 2009; 2009:4555-8. PMID: 19963836.
      View in: PubMed
    61. Zanos TP, Courellis SH, Berger TW, Hampson RE, Deadwyler SA, Marmarelis VZ. Nonlinear modeling of causal interrelationships in neuronal ensembles. IEEE Trans Neural Syst Rehabil Eng. 2008 Aug; 16(4):336-52. PMID: 18701382; PMCID: PMC2729787.
    62. Song D, Marmarelis VZ, Berger TW. Parametric and non-parametric modeling of short-term synaptic plasticity. Part I: Computational study. J Comput Neurosci. 2009 Feb; 26(1):1-19. PMID: 18506609; PMCID: PMC2770349.
    63. Song D, Wang Z, Marmarelis VZ, Berger TW. Parametric and non-parametric modeling of short-term synaptic plasticity. Part II: Experimental study. J Comput Neurosci. 2009 Feb; 26(1):21-37. PMID: 18504530; PMCID: PMC2749717.
    64. Jeong JW, Shin DC, Do SH, Blanco C, Klipfel NE, Holmes DR, Hovanessian-Larsen LJ, Marmarelis VZ. Differentiation of cancerous lesions in excised human breast specimens using multiband attenuation profiles from ultrasonic transmission tomography. J Ultrasound Med. 2008 Mar; 27(3):435-51. PMID: 18314522.
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    65. Dimoka A, Courellis SH, Marmarelis VZ, Berger TW. Modeling the nonlinear dynamic interactions of afferent pathways in the dentate gyrus of the hippocampus. Ann Biomed Eng. 2008 May; 36(5):852-64. PMID: 18299993; PMCID: PMC2749714.
    66. Dimoka A, Courellis SH, Gholmieh GI, Marmarelis VZ, Berger TW. Modeling the nonlinear properties of the in vitro hippocampal perforant path-dentate system using multielectrode array technology. IEEE Trans Biomed Eng. 2008 Feb; 55(2 Pt 1):693-702. PMID: 18270006; PMCID: PMC2749727.
    67. Markakis MG, Mitsis GD, Marmarelis VZ. Computational study of an augmented minimal model for glycaemia control. Conf Proc IEEE Eng Med Biol Soc. 2008; 2008:5445-8. PMID: 19163949.
      View in: PubMed
    68. Song D, Hendrickson P, Marmarelis VZ, Aguayo J, He J, Loeb GE, Berger TW. Predicting EMG with generalized Volterra kernel model. Conf Proc IEEE Eng Med Biol Soc. 2008; 2008:201-4. PMID: 19162628.
      View in: PubMed
    69. Markakis MG, Mitsis GD, Papavassilopoulos GP, Marmarelis VZ. Model Predictive Control of blood glucose in Type 1 diabetes: the Principal Dynamic Modes approach. Conf Proc IEEE Eng Med Biol Soc. 2008; 2008:5466-9. PMID: 19163954.
      View in: PubMed
    70. Zanos TP, Hampson RE, Deadwyler SA, Berger TW, Marmarelis VZ. Functional connectivity through nonlinear modeling: an application to the rat hippocampus. Conf Proc IEEE Eng Med Biol Soc. 2008; 2008:5522-5. PMID: 19163968.
      View in: PubMed
    71. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. Nonlinear dynamic modeling of spike train transformations for hippocampal-cortical prostheses. IEEE Trans Biomed Eng. 2007 Jun; 54(6 Pt 1):1053-66. PMID: 17554824.
      View in: PubMed
    72. Gholmieh G, Courellis S, Marmarelis V, Berger T. Nonlinear dynamic model of CA1 short-term plasticity using random impulse train stimulation. Ann Biomed Eng. 2007 May; 35(5):847-57. PMID: 17380396.
      View in: PubMed
    73. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. Statistical selection of multiple-input multiple-output nonlinear dynamic models of spike train transformation. Conf Proc IEEE Eng Med Biol Soc. 2007; 2007:4727-30. PMID: 18003061.
      View in: PubMed
    74. Mitsis GD, Marmarelis VZ. Nonlinear modeling of glucose metabolism: comparison of parametric vs. nonparametric methods. Conf Proc IEEE Eng Med Biol Soc. 2007; 2007:5968-71. PMID: 18003373.
      View in: PubMed
    75. Mitsis GD, Debert CT, Hajo MI, Marmarelis VZ, Poulin MJ. Nonlinear, multiple-input modeling of cerebral hemodynamics during baseline and hypercapnia in young and post-menopausal women. Conf Proc IEEE Eng Med Biol Soc. 2007; 2007:2855-8. PMID: 18002590.
      View in: PubMed
    76. Mitsis GD, French AS, Höger U, Courellis S, Marmarelis VZ. Principal dynamic mode analysis of action potential firing in a spider mechanoreceptor. Biol Cybern. 2007 Jan; 96(1):113-27. PMID: 17021828.
      View in: PubMed
    77. Jeong JW, Shin DC, Do S, Marmarelis VZ. Segmentation methodology for automated classification and differentiation of soft tissues in multiband images of high-resolution ultrasonic transmission tomography. IEEE Trans Med Imaging. 2006 Aug; 25(8):1068-78. PMID: 16894999.
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    78. Mitsis GD, Zhang R, Levine BD, Marmarelis VZ. Cerebral hemodynamics during orthostatic stress assessed by nonlinear modeling. J Appl Physiol (1985). 2006 Jul; 101(1):354-66. PMID: 16514006.
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    79. Zanos TP, Courellis SH, Hampson RE, Deadwyler SA, Marmarelis VZ, Berger TW. A multi-input modeling approach to quantify hippocampal nonlinear dynamic transformations. Conf Proc IEEE Eng Med Biol Soc. 2006; 1:4967-70. PMID: 17946273.
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    80. Xie X, Song D, Wang Z, Marmarelis VZ, Berger TW. Interaction of short-term neuronal plasticity and synaptic plasticity revealed by nonlinear systems analysis in dentate granule cells. Conf Proc IEEE Eng Med Biol Soc. 2006; 1:5543-6. PMID: 17946314.
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    81. Marmarelis VZ, Zanos TP, Courellis SH, Berger TW. Boolean modeling of neural systems with point-process inputs and outputs. Conf Proc IEEE Eng Med Biol Soc. 2006; 1:2114-7. PMID: 17946091.
      View in: PubMed
    82. Courellis SH, Zanos TP, Hsiao MC, Hampson RE, Deadwyler SA, Marmarelis VZ, Berger TW. Modeling hippocampal nonlinear dynamic transformations with principal dynamic modes. Conf Proc IEEE Eng Med Biol Soc. 2006; 1:2300-3. PMID: 17946509.
      View in: PubMed
    83. Dimoka A, Courellis SH, Marmarelis VZ, Berger TW. Modeling the nonlinear dynamic interactions of the lateral and the medial perforant path of the hippocampal dentate gyrus. Conf Proc IEEE Eng Med Biol Soc. 2006; 1:5539-42. PMID: 17946313.
      View in: PubMed
    84. Song D, Chan RH, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW. Physiologically plausible stochastic nonlinear kernel models of spike train to spike train transformation. Conf Proc IEEE Eng Med Biol Soc. 2006; 1:6129-32. PMID: 17946359.
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    85. Hsiao MC, Chan CH, Srinivasan V, Ahuja A, Erinjippurath G, Zanos TP, Gholmieh G, Song D, Wills JD, LaCoss J, Courellis S, Tanguay AR, Granacki JJ, Marmarelis VZ, Berger TW. VLSI implementation of a nonlinear neuronal model: a "neural prosthesis" to restore hippocampal trisynaptic dynamics. Conf Proc IEEE Eng Med Biol Soc. 2006; 1:4396-9. PMID: 17946244.
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    86. Berger TW, Ahuja A, Courellis SH, Deadwyler SA, Erinjippurath G, Gerhardt GA, Gholmieh G, Granacki JJ, Hampson R, Hsaio MC, LaCoss J, Marmarelis VZ, Nasiatka P, Srinivasan V, Song D, Tanguay AR, Wills J. Restoring lost cognitive function. IEEE Eng Med Biol Mag. 2005 Sep-Oct; 24(5):30-44. PMID: 16248115.
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    87. Huang C, Marmarelis VZ, Zhou Q, Shung KK. An analytical model of multilayer ultrasonic transducers with an inversion layer. IEEE Trans Ultrason Ferroelectr Freq Control. 2005 Mar; 52(3):469-79. PMID: 15857055.
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    88. Jeong JW, Kim TS, Shin DC, Do S, Singh M, Marmarelis VZ. Soft tissue differentiation using multiband signatures of high resolution ultrasonic transmission tomography. IEEE Trans Med Imaging. 2005 Mar; 24(3):399-408. PMID: 15754990.
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    89. Zhou Q, Cannata JM, Guo H, Huang C, Marmarelis VZ, Shung KK. Half-thickness inversion layer high-frequency ultrasonic transducers using LiNbO3 single crystal. IEEE Trans Ultrason Ferroelectr Freq Control. 2005 Jan; 52(1):127-33. PMID: 15742569.
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    90. Mitsis GD, Poulin MJ, Robbins PA, Marmarelis VZ. Nonlinear modeling of the dynamic effects of arterial pressure and CO2 variations on cerebral blood flow in healthy humans. IEEE Trans Biomed Eng. 2004 Nov; 51(11):1932-43. PMID: 15536895.
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    91. Gholmieh G, Courellis S, Dimoka A, Wills JD, LaCoss J, Granacki JJ, Marmarelis V, Berger T. An algorithm for real-time extraction of population EPSP and population spike amplitudes from hippocampal field potential recordings. J Neurosci Methods. 2004 Jul 30; 136(2):111-21. PMID: 15183263.
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