Jonathan Katz, PhD

Title(s)Assistant Professor of Research Medicine
SchoolKeck School of Medicine of Usc
Address1969 Zonal Ave
Off Campus
Los Angeles CA 90089-9163
Phone+1 818 631 5289
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    Dr. Katz earned his B.S. in Microbiology & Molecular Genetics and Cognitive Science. He then went on to earn his PhD in Biochemistry and Molecular Biology from University of California, Los Angeles.

    Dr. Katz's research interests include mass spectrometry, proteomics and elucidation of novel clinical prognostic markers.

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Human colorectal cancer-on-chip model to study the microenvironmental influence on early metastatic spread. iScience. 2021 May 21; 24(5):102509. Strelez C, Chilakala S, Ghaffarian K, Lau R, Spiller E, Ung N, Hixon D, Yoon AY, Sun RX, Lenz HJ, Katz JE, Mumenthaler SM. PMID: 34113836; PMCID: PMC8169959.
      View in: PubMed   Mentions: 6  
    2. Deploying Mass Spectrometric Data Analysis in the Amazon AWS Cloud Computing Environment. Methods Mol Biol. 2021; 2271:375-397. Katz JE. PMID: 33908021.
      View in: PubMed   Mentions:    Fields:    
    3. Pharmacokinetic properties of the temozolomide perillyl alcohol conjugate (NEO212) in mice. Neurooncol Adv. 2020 Jan-Dec; 2(1):vdaa160. Cho HY, Swenson S, Thein TZ, Wang W, Wijeratne NR, Marín-Ramos NI, Katz JE, Hofman FM, Schönthal AH, Chen TC. PMID: 33392507; PMCID: PMC7764505.
      View in: PubMed   Mentions: 1  
    4. ARID1A prevents squamous cell carcinoma initiation and chemoresistance by antagonizing pRb/E2F1/c-Myc-mediated cancer stemness. Cell Death Differ. 2020 06; 27(6):1981-1997. Luo Q, Wu X, Chang W, Zhao P, Nan Y, Zhu X, Katz JP, Su D, Liu Z. PMID: 31831874; PMCID: PMC7244577.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    5. Loss of ER retention motif of AGR2 can impact mTORC signaling and promote cancer metastasis. Oncogene. 2019 04; 38(16):3003-3018. Tiemann K, Garri C, Lee SB, Malihi PD, Park M, Alvarez RM, Yap LP, Mallick P, Katz JE, Gross ME, Kani K. PMID: 30575818; PMCID: PMC7523706.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    6. Identification, characterization and application of a new peptide against anterior gradient homolog 2 (AGR2). Oncotarget. 2018 Jun 08; 9(44):27363-27379. Garri C, Howell S, Tiemann K, Tiffany A, Jalali-Yazdi F, Alba MM, Katz JE, Takahashi TT, Landgraf R, Gross ME, Roberts RW, Kani K. PMID: 29937991; PMCID: PMC6007958.
      View in: PubMed   Mentions: 5     Fields:    
    7. JUN-Mediated Downregulation of EGFR Signaling Is Associated with Resistance to Gefitinib in EGFR-mutant NSCLC Cell Lines. Mol Cancer Ther. 2017 08; 16(8):1645-1657. Kani K, Garri C, Tiemann K, Malihi PD, Punj V, Nguyen AL, Lee J, Hughes LD, Alvarez RM, Wood DM, Joo AY, Katz JE, Agus DB, Mallick P. PMID: 28566434; PMCID: PMC5558834.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    8. Virtualization of Legacy Instrumentation Control Computers for Improved Reliability, Operational Life, and Management. Methods Mol Biol. 2017; 1550:309-324. Katz JE. PMID: 28188538.
      View in: PubMed   Mentions:    Fields:    
    9. Krüppel-like factors in cancer. Nat Rev Cancer. 2013 Oct; 13(10):701-13. Tetreault MP, Yang Y, Katz JP. PMID: 24060862.
      View in: PubMed   Mentions: 143     Fields:    Translation:HumansAnimalsCells
    10. A physical sciences network characterization of non-tumorigenic and metastatic cells. Sci Rep. 2013; 3:1449. Physical Sciences - Oncology Centers Network, Agus DB, Alexander JF, Arap W, Ashili S, Aslan JE, Austin RH, Backman V, Bethel KJ, Bonneau R, Chen WC, Chen-Tanyolac C, Choi NC, Curley SA, Dallas M, Damania D, Davies PC, Decuzzi P, Dickinson L, Estevez-Salmeron L, Estrella V, Ferrari M, Fischbach C, Foo J, Fraley SI, Frantz C, Fuhrmann A, Gascard P, Gatenby RA, Geng Y, Gerecht S, Gillies RJ, Godin B, Grady WM, Greenfield A, Hemphill C, Hempstead BL, Hielscher A, Hillis WD, Holland EC, Ibrahim-Hashim A, Jacks T, Johnson RH, Joo A, Katz JE, Kelbauskas L, Kesselman C, King MR, Konstantopoulos K, Kraning-Rush CM, Kuhn P, Kung K, Kwee B, Lakins JN, Lambert G, Liao D, Licht JD, Liphardt JT, Liu L, Lloyd MC, Lyubimova A, Mallick P, Marko J, McCarty OJ, Meldrum DR, Michor F, Mumenthaler SM, Nandakumar V, O'Halloran TV, Oh S, Pasqualini R, Paszek MJ, Philips KG, Poultney CS, Rana K, Reinhart-King CA, Ros R, Semenza GL, Senechal P, Shuler ML, Srinivasan S, Staunton JR, Stypula Y, Subramanian H, Tlsty TD, Tormoen GW, Tseng Y, van Oudenaarden A, Verbridge SS, Wan JC, Weaver VM, Widom J, Will C, Wirtz D, Wojtkowiak J, Wu PH. PMID: 23618955; PMCID: PMC3636513.
      View in: PubMed   Mentions: 73     Fields:    Translation:HumansCells
    11. A cross-platform toolkit for mass spectrometry and proteomics. Nat Biotechnol. 2012 Oct; 30(10):918-20. Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, Kani K, Moulding C, Seymour SL, Nuwaysir LM, Lefebvre B, Kuhlmann F, Roark J, Rainer P, Detlev S, Hemenway T, Huhmer A, Langridge J, Connolly B, Chadick T, Holly K, Eckels J, Deutsch EW, Moritz RL, Katz JE, Agus DB, MacCoss M, Tabb DL, Mallick P. PMID: 23051804; PMCID: PMC3471674.
      View in: PubMed   Mentions: 943     Fields:    Translation:Humans
    12. Quantitative proteomic profiling identifies protein correlates to EGFR kinase inhibition. Mol Cancer Ther. 2012 May; 11(5):1071-81. Kani K, Faca VM, Hughes LD, Zhang W, Fang Q, Shahbaba B, Luethy R, Erde J, Schmidt J, Pitteri SJ, Zhang Q, Katz JE, Gross ME, Plevritis SK, McIntosh MW, Jain A, Hanash S, Agus DB, Mallick P. PMID: 22411897; PMCID: PMC3959865.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    13. A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas. Mol Cell Proteomics. 2011 Sep; 10(9):M110.006353. Farrah T, Deutsch EW, Omenn GS, Campbell DS, Sun Z, Bletz JA, Mallick P, Katz JE, Malmström J, Ossola R, Watts JD, Lin B, Zhang H, Moritz RL, Aebersold R. PMID: 21632744; PMCID: PMC3186192.
      View in: PubMed   Mentions: 188     Fields:    Translation:Humans
    14. Model-based discovery of circulating biomarkers. Methods Mol Biol. 2011; 728:87-107. Vogelsang MS, Kani K, Katz JE, Mallick P. PMID: 21468942.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    15. Peptide identification from mixture tandem mass spectra. Mol Cell Proteomics. 2010 Jul; 9(7):1476-85. Wang J, Pérez-Santiago J, Katz JE, Mallick P, Bandeira N. PMID: 20348588; PMCID: PMC2938093.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    16. Precursor-ion mass re-estimation improves peptide identification on hybrid instruments. J Proteome Res. 2008 Sep; 7(9):4031-9. Luethy R, Kessner DE, Katz JE, Maclean B, Grothe R, Kani K, Faça V, Pitteri S, Hanash S, Agus DB, Mallick P. PMID: 18707148; PMCID: PMC4673049.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    17. The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools. J Proteome Res. 2008 Jan; 7(1):96-103. Klimek J, Eddes JS, Hohmann L, Jackson J, Peterson A, Letarte S, Gafken PR, Katz JE, Mallick P, Lee H, Schmidt A, Ossola R, Eng JK, Aebersold R, Martin DB. PMID: 17711323; PMCID: PMC2577160.
      View in: PubMed   Mentions: 69     Fields:    
    18. Clinical proteomics: the promises and challenges of mass spectrometry-based biomarker discovery. Clin Adv Hematol Oncol. 2006 Jul; 4(7):541-9. deVera IE, Katz JE, Agus DB. PMID: 17147241.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    19. Yeast Hsl7 (histone synthetic lethal 7) catalyses the in vitro formation of omega-N(G)-monomethylarginine in calf thymus histone H2A. Biochem J. 2006 May 01; 395(3):563-70. Miranda TB, Sayegh J, Frankel A, Katz JE, Miranda M, Clarke S. PMID: 16426232; PMCID: PMC1462694.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    20. A perspective on protein profiling of blood. BJU Int. 2005 Sep; 96(4):477-82. Katz JE, Mallick P, Agus DB. PMID: 16104895.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    21. Subtle modification of isotope ratio proteomics; an integrated strategy for expression proteomics. Phytochemistry. 2004 Jun; 65(11):1507-15. Whitelegge JP, Katz JE, Pihakari KA, Hale R, Aguilera R, Gómez SM, Faull KF, Vavilin D, Vermaas W. PMID: 15276448.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    22. 3-Isopropylmalate is the major endogenous substrate of the Saccharomyces cerevisiae trans-aconitate methyltransferase. Biochemistry. 2004 May 25; 43(20):5976-86. Katz JE, Dumlao DS, Wasserman JI, Lansdown MG, Jung ME, Faull KF, Clarke S. PMID: 15147181.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    23. A new technique (COMSPARI) to facilitate the identification of minor compounds in complex mixtures by GC/MS and LC/MS: tools for the visualization of matched datasets. J Am Soc Mass Spectrom. 2004 Apr; 15(4):580-4. Katz JE, Dumlao DS, Clarke S, Hau J. PMID: 15047062.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    24. Automated identification of putative methyltransferases from genomic open reading frames. Mol Cell Proteomics. 2003 Aug; 2(8):525-40. Katz JE, Dlakic M, Clarke S. PMID: 12872006.
      View in: PubMed   Mentions: 66     Fields:    Translation:HumansAnimalsCells
    25. Structure and function of an archaeal homolog of survival protein E (SurEalpha): an acid phosphatase with purine nucleotide specificity. J Mol Biol. 2003 Mar 07; 326(5):1559-75. Mura C, Katz JE, Clarke SG, Eisenberg D. PMID: 12595266.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
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