Jonathan Katz, PhD

TitleAssistant Professor of Research Medicine
InstitutionUniversity of Southern California
DepartmentProvost - Ellison Institute
AddressCSC 2250 Alcazar St. Ste. 240
Health Sciences Campus
Los Angeles CA 90089
Phone+1 323 205 5289
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    Dr. Katz earned his B.S. in Microbiology & Molecular Genetics and Cognitive Science. He then went on to earn his PhD in Biochemistry and Molecular Biology from University of California, Los Angeles.

    Dr. Katz's research interests include mass spectrometry, proteomics and elucidation of novel clinical prognostic markers.

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Garri C, Howell S, Tiemann K, Tiffany A, Jalali-Yazdi F, Alba MM, Katz J, Takahashi TT, Landgraf R, Gross ME, Roberts RW, Kani K. Identification, characterization and application of a new peptide against anterior gradient homolog 2 (AGR2). Oncotarget. 2018 Jun 08; 9(44):27363-27379. PMID: 29937991.
      View in: PubMed
    2. Kani K, Garri C, Tiemann K, Malihi PD, Punj V, Nguyen AL, Lee J, Hughes LD, Alvarez RM, Wood DM, Joo AY, Katz J, Agus DB, Mallick P. JUN-Mediated Downregulation of EGFR Signaling Is Associated with Resistance to Gefitinib in EGFR-mutant NSCLC Cell Lines. Mol Cancer Ther. 2017 Aug; 16(8):1645-1657. PMID: 28566434.
      View in: PubMed
    3. Katz J. Virtualization of Legacy Instrumentation Control Computers for Improved Reliability, Operational Life, and Management. Methods Mol Biol. 2017; 1550:309-324. PMID: 28188538.
      View in: PubMed
    4. Tetreault MP, Yang Y, Katz J. Krüppel-like factors in cancer. Nat Rev Cancer. 2013 Oct; 13(10):701-13. PMID: 24060862.
      View in: PubMed
    5. A physical sciences network characterization of non-tumorigenic and metastatic cells. Sci Rep. 2013; 3:1449. PMID: 23618955; PMCID: PMC3636513.
    6. Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, Kani K, Moulding C, Seymour SL, Nuwaysir LM, Lefebvre B, Kuhlmann F, Roark J, Rainer P, Detlev S, Hemenway T, Huhmer A, Langridge J, Connolly B, Chadick T, Holly K, Eckels J, Deutsch EW, Moritz RL, Katz J, Agus DB, MacCoss M, Tabb DL, Mallick P. A cross-platform toolkit for mass spectrometry and proteomics. Nat Biotechnol. 2012 Oct; 30(10):918-20. PMID: 23051804; PMCID: PMC3471674.
    7. Kani K, Faca VM, Hughes LD, Zhang W, Fang Q, Shahbaba B, Luethy R, Erde J, Schmidt J, Pitteri SJ, Zhang Q, Katz J, Gross ME, Plevritis SK, McIntosh MW, Jain A, Hanash S, Agus DB, Mallick P. Quantitative proteomic profiling identifies protein correlates to EGFR kinase inhibition. Mol Cancer Ther. 2012 May; 11(5):1071-81. PMID: 22411897; PMCID: PMC3959865.
    8. Farrah T, Deutsch EW, Omenn GS, Campbell DS, Sun Z, Bletz JA, Mallick P, Katz J, Malmström J, Ossola R, Watts JD, Lin B, Zhang H, Moritz RL, Aebersold R. A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas. Mol Cell Proteomics. 2011 Sep; 10(9):M110.006353. PMID: 21632744; PMCID: PMC3186192.
    9. Vogelsang MS, Kani K, Katz J, Mallick P. Model-based discovery of circulating biomarkers. Methods Mol Biol. 2011; 728:87-107. PMID: 21468942.
      View in: PubMed
    10. Wang J, Pérez-Santiago J, Katz J, Mallick P, Bandeira N. Peptide identification from mixture tandem mass spectra. Mol Cell Proteomics. 2010 Jul; 9(7):1476-85. PMID: 20348588; PMCID: PMC2938093.
    11. Luethy R, Kessner DE, Katz J, Maclean B, Grothe R, Kani K, Faça V, Pitteri S, Hanash S, Agus DB, Mallick P. Precursor-ion mass re-estimation improves peptide identification on hybrid instruments. J Proteome Res. 2008 Sep; 7(9):4031-9. PMID: 18707148; PMCID: PMC4673049.
    12. Klimek J, Eddes JS, Hohmann L, Jackson J, Peterson A, Letarte S, Gafken PR, Katz J, Mallick P, Lee H, Schmidt A, Ossola R, Eng JK, Aebersold R, Martin DB. The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools. J Proteome Res. 2008 Jan; 7(1):96-103. PMID: 17711323; PMCID: PMC2577160.
    13. deVera IE, Katz J, Agus DB. Clinical proteomics: the promises and challenges of mass spectrometry-based biomarker discovery. Clin Adv Hematol Oncol. 2006 Jul; 4(7):541-9. PMID: 17147241.
      View in: PubMed
    14. Miranda TB, Sayegh J, Frankel A, Katz J, Miranda M, Clarke S. Yeast Hsl7 (histone synthetic lethal 7) catalyses the in vitro formation of omega-N(G)-monomethylarginine in calf thymus histone H2A. Biochem J. 2006 May 01; 395(3):563-70. PMID: 16426232; PMCID: PMC1462694.
    15. Katz J, Mallick P, Agus DB. A perspective on protein profiling of blood. BJU Int. 2005 Sep; 96(4):477-82. PMID: 16104895.
      View in: PubMed
    16. Whitelegge JP, Katz J, Pihakari KA, Hale R, Aguilera R, Gómez SM, Faull KF, Vavilin D, Vermaas W. Subtle modification of isotope ratio proteomics; an integrated strategy for expression proteomics. Phytochemistry. 2004 Jun; 65(11):1507-15. PMID: 15276448.
      View in: PubMed
    17. Katz J, Dumlao DS, Wasserman JI, Lansdown MG, Jung ME, Faull KF, Clarke S. 3-Isopropylmalate is the major endogenous substrate of the Saccharomyces cerevisiae trans-aconitate methyltransferase. Biochemistry. 2004 May 25; 43(20):5976-86. PMID: 15147181.
      View in: PubMed
    18. Katz J, Dumlao DS, Clarke S, Hau J. A new technique (COMSPARI) to facilitate the identification of minor compounds in complex mixtures by GC/MS and LC/MS: tools for the visualization of matched datasets. J Am Soc Mass Spectrom. 2004 Apr; 15(4):580-4. PMID: 15047062.
      View in: PubMed
    19. Katz J, Dlakic M, Clarke S. Automated identification of putative methyltransferases from genomic open reading frames. Mol Cell Proteomics. 2003 Aug; 2(8):525-40. PMID: 12872006.
      View in: PubMed
    20. Mura C, Katz J, Clarke SG, Eisenberg D. Structure and function of an archaeal homolog of survival protein E (SurEalpha): an acid phosphatase with purine nucleotide specificity. J Mol Biol. 2003 Mar 07; 326(5):1559-75. PMID: 12595266.
      View in: PubMed