Mohammad Vahed

Title(s)Postdoctoral Scholar - Research Associate
SchoolUSC School of Pharmacy
Address1540 Alcazar Street
Health Sciences Campus
Los Angeles CA 90033
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Response to 'comment on rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing' by Davydov A.N.; Bolotin D.A.; Poslavsky S. V. and Chudakov D.M. Brief Bioinform. 2023 09 22; 24(6). Huang YN, Vahed M, Peng K, Alachkar H, Mangul S. PMID: 37824736; PMCID: PMC10569746.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. Analytical code sharing practices in biomedical research. bioRxiv. 2023 Aug 07. Sharma NK, Ayyala R, Deshpande D, Patel YM, Munteanu V, Ciorba D, Fiscutean A, Vahed M, Sarkar A, Guo R, Moore A, Darci-Maher N, Nogoy NA, Abedalthagafi MS, Mangul S. PMID: 37609176; PMCID: PMC10441317.
      View in: PubMed   Mentions:
    3. Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing. Brief Bioinform. 2023 07 20; 24(4). Peng K, Nowicki TS, Campbell K, Vahed M, Peng D, Meng Y, Nagareddy A, Huang YN, Karlsberg A, Miller Z, Brito J, Nadel B, Pak VM, Abedalthagafi MS, Burkhardt AM, Alachkar H, Ribas A, Mangul S. PMID: 37291798; PMCID: PMC10359085.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    4. T-Ridership: A web tool for reprogramming public transportation fleets to minimize COVID-19 transmission. SoftwareX. 2023 May; 22:101350. Imani S, Vahed M, Satodia S, Vahed M. PMID: 36969748; PMCID: PMC9995304.
      View in: PubMed   Mentions:
    5. pyTCR: A comprehensive and scalable solution for TCR-Seq data analysis to facilitate reproducibility and rigor of immunogenomics research. Front Immunol. 2022; 13:954078. Peng K, Moore J, Vahed M, Brito J, Kao G, Burkhardt AM, Alachkar H, Mangul S. PMID: 36451811; PMCID: PMC9704496.
      View in: PubMed   Mentions: 2     Fields:    
    6. BML: a versatile web server for bipartite motif discovery. Brief Bioinform. 2022 01 17; 23(1). Vahed M, Vahed M, Garmire LX. PMID: 34974623; PMCID: PMC8769915.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    7. The initial stage of structural transformation of Aβ42 peptides from the human and mole rat in the presence of Fe2+ and Fe3+: Related to Alzheimer's disease. Comput Biol Chem. 2019 Dec; 83:107128. Vahed M, Sweeney A, Shirasawa H, Vahed M. PMID: 31585353.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    8. DIpartite: A tool for detecting bipartite motifs by considering base interdependencies. PLoS One. 2019; 14(8):e0220207. Vahed M, Ishihara JI, Takahashi H. PMID: 31469855; PMCID: PMC6716629.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    9. G-rich VEGF aptamer as a potential inhibitor of chitin trafficking signal in emerging opportunistic yeast infection. Comput Biol Chem. 2019 Jun; 80:168-176. Vahed M, Ahmadian G, Ameri N, Vahed M. PMID: 30965174.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    10. A new species and new records of the genus Neotarsonemoides Kaliszewski, 1984 (Acari: Tarsonemidae) from East Azerbaijan province, Northwestern Iran. Zootaxa. 2016 Nov 02; 4184(1):63-78. Gheblealivand SS, Irani-Nejad KH, Manzari S, Vahed MM, Magowski WL. PMID: 27811654.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
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    NIH Funding Acknowledgment: Important - All publications resulting from the utilization of SC CTSI resources are required to credit the SC CTSI grant by including the NIH funding acknowledgment and must comply with the NIH Public Access Policy.

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