Loading...

Serghei Mangul

Title(s)Assistant Professor
Address1540 Alcazar St., CHP 236D
Health Sciences Campus
Los Angeles CA 90089
Phone+1 323 442 0043
vCardDownload vCard

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Author Correction: Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing. Nat Commun. 2020 Sep 04; 11(1):4499. Mandric I, Rotman J, Yang HT, Strauli N, Montoya DJ, Van Der Wey W, Ronas JR, Statz B, Yao D, Petrova V, Zelikovsky A, Spreafico R, Shifman S, Zaitlen N, Rossetti M, Ansel KM, Eskin E, Mangul S. PMID: 32887888.
      View in: PubMed   Mentions:    Fields:    
    2. Correction to: Improving the usability and comprehensiveness of microbial databases. BMC Biol. 2020 Jul 28; 18(1):92. Loeffler C, Karlsberg A, Martin LS, Eskin E, Koslicki D, Mangul S. PMID: 32723395.
      View in: PubMed   Mentions:    Fields:    
    3. Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing. Nat Commun. 2020 06 19; 11(1):3126. Mandric I, Rotman J, Yang HT, Strauli N, Montoya DJ, Van Der Wey W, Ronas JR, Statz B, Yao D, Petrova V, Zelikovsky A, Spreafico R, Shifman S, Zaitlen N, Rossetti M, Ansel KM, Eskin E, Mangul S. PMID: 32561710.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    4. Intratumoral CD4+ T Cells Mediate Anti-tumor Cytotoxicity in Human Bladder Cancer. Cell. 2020 Jun 25; 181(7):1612-1625.e13. Oh DY, Kwek SS, Raju SS, Li T, McCarthy E, Chow E, Aran D, Ilano A, Pai CS, Rancan C, Allaire K, Burra A, Sun Y, Spitzer MH, Mangul S, Porten S, Meng MV, Friedlander TW, Ye CJ, Fong L. PMID: 32497499.
      View in: PubMed   Mentions:    Fields:    
    5. Recommendations to enhance rigor and reproducibility in biomedical research. Gigascience. 2020 Jun 01; 9(6). Brito JJ, Li J, Moore JH, Greene CS, Nogoy NA, Garmire LX, Mangul S. PMID: 32479592.
      View in: PubMed   Mentions:    Fields:    
    6. Improving the usability and comprehensiveness of microbial databases. BMC Biol. 2020 Apr 07; 18(1):37. Loeffler C, Karlsberg A, Martin LS, Eskin E, Koslicki D, Mangul S. PMID: 32264902.
      View in: PubMed   Mentions: 1     Fields:    
    7. Benchmarking of computational error-correction methods for next-generation sequencing data. Genome Biol. 2020 03 17; 21(1):71. Mitchell K, Brito JJ, Mandric I, Wu Q, Knyazev S, Chang S, Martin LS, Karlsberg A, Gerasimov E, Littman R, Hill BL, Wu NC, Yang HT, Hsieh K, Chen L, Littman E, Shabani T, Enik G, Yao D, Sun R, Schroeder J, Eskin E, Zelikovsky A, Skums P, Pop M, Mangul S. PMID: 32183840.
      View in: PubMed   Mentions:    Fields:    
    8. Telescope: an interactive tool for managing large-scale analysis from mobile devices. Gigascience. 2020 01 01; 9(1). Brito JJ, Mosqueiro T, Rotman J, Xue V, Chapski DJ, la Hoz J, Matias P, Martin LS, Zelikovsky A, Pellegrini M, Mangul S. PMID: 31972019.
      View in: PubMed   Mentions:    Fields:    
    9. Transcriptional profiling of single fiber cells in a transgenic paradigm of an inherited childhood cataract reveals absence of molecular heterogeneity. J Biol Chem. 2019 09 13; 294(37):13530-13544. Bhat SP, Gangalum RK, Kim D, Mangul S, Kashyap RK, Zhou X, Elashoff D. PMID: 31243103.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    10. Challenges and recommendations to improve the installability and archival stability of omics computational tools. PLoS Biol. 2019 06; 17(6):e3000333. Mangul S, Mosqueiro T, Abdill RJ, Duong D, Mitchell K, Sarwal V, Hill B, Brito J, Littman RJ, Statz B, Lam AK, Dayama G, Grieneisen L, Martin LS, Flint J, Eskin E, Blekhman R. PMID: 31220077.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    11. MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples. BMC Genomics. 2019 Jun 06; 20(Suppl 5):423. LaPierre N, Mangul S, Alser M, Mandric I, Wu NC, Koslicki D, Eskin E. PMID: 31167634.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    12. Systematic benchmarking of omics computational tools. Nat Commun. 2019 03 27; 10(1):1393. Mangul S, Martin LS, Hill BL, Lam AK, Distler MG, Zelikovsky A, Eskin E, Flint J. PMID: 30918265.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    13. How bioinformatics and open data can boost basic science in countries and universities with limited resources. Nat Biotechnol. 2019 03; 37(3):324-326. Mangul S, Martin LS, Langmead B, Sanchez-Galan JE, Toma I, Hormozdiari F, Pevzner P, Eskin E. PMID: 30833765.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    14. Improving the usability and archival stability of bioinformatics software. Genome Biol. 2019 02 27; 20(1):47. Mangul S, Martin LS, Eskin E, Blekhman R. PMID: 30813962.
      View in: PubMed   Mentions: 4     Fields:    
    15. Spatial Analysis of Single Fiber Cells of the Developing Ocular Lens Reveals Regulated Heterogeneity of Gene Expression. iScience. 2018 Dec 21; 10:66-79. Gangalum RK, Kim D, Kashyap RK, Mangul S, Zhou X, Elashoff D, Bhat SP. PMID: 30508719.
      View in: PubMed   Mentions:
    16. A Comprehensive Map of Genetic Variation in the World's Largest Ethnic Group-Han Chinese. Mol Biol Evol. 2018 11 01; 35(11):2736-2750. Chiang CWK, Mangul S, Robles C, Sankararaman S. PMID: 30169787.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimals
    17. Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia. Transl Psychiatry. 2018 05 10; 8(1):96. Olde Loohuis LM, Mangul S, Ori APS, Jospin G, Koslicki D, Yang HT, Wu T, Boks MP, Lomen-Hoerth C, Wiedau-Pazos M, Cantor RM, de Vos WM, Kahn RS, Eskin E, Ophoff RA. PMID: 29743478.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    18. Involving undergraduates in genomics research to narrow the education-research gap. Nat Biotechnol. 2018 04 05; 36(4):369-371. Mangul S, Martin LS, Eskin E. PMID: 29621227.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    19. ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues. Genome Biol. 2018 02 15; 19(1):36. Mangul S, Yang HT, Strauli N, Gruhl F, Porath HT, Hsieh K, Chen L, Daley T, Christenson S, Wesolowska-Andersen A, Spreafico R, Rios C, Eng C, Smith AD, Hernandez RD, Ophoff RA, Santana JR, Levanon EY, Woodruff PG, Burchard E, Seibold MA, Shifman S, Eskin E, Zaitlen N. PMID: 29548336.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    20. Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX. Trends Biotechnol. 2017 10; 35(10):901-903. Mangul S, Martin LS, Hoffmann A, Pellegrini M, Eskin E. PMID: 28720283.
      View in: PubMed   Mentions: 3     Fields:    
    21. HapIso: An Accurate Method for the Haplotype- Specific Isoforms Reconstruction From Long Single-Molecule Reads. IEEE Trans Nanobioscience. 2017 03; 16(2):108-115. Mangul S, Yang TH, Hormozdiari F, Dainis AM, Tseng E, Ashley EA, Zelikovsky A, Eskin E. PMID: 28328508.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    22. Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. J Comput Biol. 2017 Jun; 24(6):558-570. Artyomenko A, Wu NC, Mangul S, Eskin E, Sun R, Zelikovsky A. PMID: 27901586.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    23. Discovering Single Nucleotide Polymorphisms Regulating Human Gene Expression Using Allele Specific Expression from RNA-seq Data. Genetics. 2016 11; 204(3):1057-1064. Kang EY, Martin LJ, Mangul S, Isvilanonda W, Zou J, Ben-David E, Han B, Lusis AJ, Shifman S, Eskin E. PMID: 27765809.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    24. CRISPR-Mediated VHL Knockout Generates an Improved Model for Metastatic Renal Cell Carcinoma. Sci Rep. 2016 06 30; 6:29032. Schokrpur S, Hu J, Moughon DL, Liu P, Lin LC, Hermann K, Mangul S, Guan W, Pellegrini M, Xu H, Wu L. PMID: 27358011.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    25. Transcriptome assembly and quantification from Ion Torrent RNA-Seq data. BMC Genomics. 2014; 15 Suppl 5:S7. Mangul S, Caciula A, Al Seesi S, Brinza D, M?ndoiu I, Zelikovsky A. PMID: 25082147.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    26. Accurate viral population assembly from ultra-deep sequencing data. Bioinformatics. 2014 Jun 15; 30(12):i329-37. Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E. PMID: 24932001.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    27. Inferring viral quasispecies spectra from 454 pyrosequencing reads. BMC Bioinformatics. 2011; 12 Suppl 6:S1. Astrovskaya I, Tork B, Mangul S, Westbrooks K, Mandoiu I, Balfe P, Zelikovsky A. PMID: 21989211.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    28. Estimation of alternative splicing isoform frequencies from RNA-Seq data. Algorithms Mol Biol. 2011 Apr 19; 6(1):9. Nicolae M, Mangul S, Mandoiu II, Zelikovsky A. PMID: 21504602.
      View in: PubMed   Mentions:
    29. Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations. In Silico Biol. 2011-2012; 11(5-6):251-61. Mangul S, Caciula A, Glebova O, Mandoiu I, Zelikovsky A. PMID: 23202426.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    Serghei's Networks
    Concepts (115)
    Derived automatically from this person's publications.
    _
    Co-Authors (23)
    People in Profiles who have published with this person.
    _
    Similar People (60)
    People who share similar concepts with this person.
    _
    Same Department
    Search Department
    _