Mohammed H.K. Alser

Title(s)Postdoctoral Scholar - Research Associate
SchoolUSC School of Pharmacy
Address1540 Alcazar Street
Health Sciences Campus
Los Angeles CA 90033
Phone+1 323 442 0043
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Common misconceptions and myths about ovarian cancer causation: a national cross-sectional study from palestine. BMC Public Health. 2024 Apr 12; 24(1):1027. Elshami M, Jaber I, Alser M, Al-Slaibi I, Jabr H, Ubaiat S, Tuffaha A, Khader S, Khraishi R, Arafeh ZA, Al-Madhoun S, Alqattaa A, Yaseen A, El Hadi AA, Barhoush O, Hijazy M, Eleyan T, Alser A, Hziema AA, Shatat A, Almakhtoob F, Mohamad B, Farhat W, Abuamra Y, Mousa H, Adawi R, Musallam A, Albarqi SI, Abu-El-Noor N, Bottcher B. PMID: 38609950; PMCID: PMC11015600.
      View in: PubMed   Mentions:
    2. Packaging and containerization of computational methods. Nat Protoc. 2024 Apr 02. Alser M, Lawlor B, Abdill RJ, Waymost S, Ayyala R, Rajkumar N, LaPierre N, Brito J, Ribeiro-Dos-Santos AM, Almadhoun N, Sarwal V, Firtina C, Osinski T, Eskin E, Hu Q, Strong D, Kim BBD, Abedalthagafi MS, Mutlu O, Mangul S. PMID: 38565959.
      View in: PubMed   Mentions:    Fields:    
    3. RUBICON: a framework for designing efficient deep learning-based genomic basecallers. Genome Biol. 2024 Feb 16; 25(1):49. Singh G, Alser M, Denolf K, Firtina C, Khodamoradi A, Cavlak MB, Corporaal H, Mutlu O. PMID: 38365730; PMCID: PMC10870431.
      View in: PubMed   Mentions:    Fields:    
    4. Anticipated time to seek medical advice for possible lung cancer symptoms and barriers to timely presentation in Palestine: a national cross-sectional study. BMC Cancer. 2024 Feb 07; 24(1):183. Elshami M, Sawafta N, Mansour A, Alser M, Al-Slaibi I, Abukmail H, Shurrab H, Qassem S, Usrof FD, Alruzayqat M, Aqel W, Nairoukh R, Kittaneh R, Habes YMN, Ghanim O, Aabed WA, Omar O, Daraghma M, Aljbour J, Elian REM, Zuhour A, Habes H, Al-Dadah M, Albarqi SI, Bottcher B, Abu-El-Noor N. PMID: 38326766; PMCID: PMC10848550.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    5. Differences in Colorectal Cancer Awareness Between Vegetarians and Nonvegetarians: A National Cross-Sectional Study From Palestine. JCO Glob Oncol. 2024 Feb; 10:e2300400. Elshami M, Albandak M, Alser M, Al-Slaibi I, Ayyad M, Dwikat MF, Naji SA, Mohamad BM, Isleem WS, Shurrab A, Yaghi B, Ayyash Qabaja Y, Hamdan FK, Sweity RR, Jneed RT, Assaf KA, Hmaid MM, Awwad II, Alhabil BK, Alarda MN, Alsattari AS, Aboyousef MS, Aljbour OA, AlSharif R, Giacaman CT, Alnaga AY, Abu Nemer RM, Almadhoun NM, Skaik SM, Albarqi SI, Abu-El-Noor N, Bottcher B. PMID: 38386954; PMCID: PMC10898678.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    6. Barriers to Timely Seeking of Breast Cancer Care Among Palestinian Women: A Cross-Sectional Study. JCO Glob Oncol. 2024 Feb; 10:e2300373. Elshami M, Qawasmi MA, Ghithan RJ, Al-Slaibi I, Alser M, Shurrab NR, Ismail IO, Mahfouz II, AbdulQader Fannon A, Hawa MR, Giacaman N, Ahmaro M, Okshiya HM, Zaatreh RK, AbuKhalil WA, Usrof FD, Melhim NK, Madbouh RJ, Abu Hziema HJ, Abed-Allateef Lahlooh R, Ubaiat SN, Jaffal NA, Alawna RK, Abed SN, Abuzahra BN, Abu Kwaik AJ, Dodin MH, Taha RO, Alashqar DM, Mobarak RA, Smerat T, Albarqi SI, Abu-El-Noor N, Bottcher B. PMID: 38386955; PMCID: PMC10898679.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    7. Screening Perspectives: The Role of Colorectal Cancer Awareness in Shaping Attitudes Toward Colonoscopy in Palestine. JCO Glob Oncol. 2024 Feb; 10:e2300470. Elshami M, Albandak M, Alser M, Al-Slaibi I, Ayyad M, Dwikat MF, Naji SA, Mohamad BM, Isleem WS, Shurrab A, Yaghi B, Qabaja YA, Hamdan FK, Sweity RR, Jneed RT, Assaf KA, Hmaid MM, Awwad II, Alhabil BK, Alarda MN, Alsattari AS, Aboyousef MS, Aljbour OA, AlSharif R, Giacaman CT, Alnaga AY, Abu Nemer RM, Almadhoun NM, Skaik SM, Albarqi SI, Abu-El-Noor N, Bottcher B. PMID: 38386956; PMCID: PMC10898669.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    8. Myths and common misbeliefs about cervical cancer causation among Palestinian women: a national cross-sectional study. BMC Public Health. 2024 01 16; 24(1):189. Elshami M, Abukmail H, Thalji M, Al-Slaibi I, Alser M, Radaydeh A, Alfuqaha A, Khader S, Khatib L, Fannoun N, Ahmad B, Kassab L, Khrishi H, Elhussaini D, Abed N, Nammari A, Abdallah T, Alqudwa Z, Idais S, Tanbouz G, Hajajreh M, Selmiyh HA, Abo-Hajouj Z, Hebi H, Zamel M, Skaik RN, Hammoud L, Rjoub S, Ayesh H, Rjoub T, Zakout R, Alser A, Albarqi SI, Abu-El-Noor N, Bottcher B. PMID: 38229049; PMCID: PMC10790379.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    9. Myths and Common Misbeliefs About Colorectal Cancer Causation in Palestine: A National Cross-Sectional Study. JCO Glob Oncol. 2024 Jan; 10:e2300295. Elshami M, Naji SA, Dwikat MF, Al-Slaibi I, Alser M, Ayyad M, Mohamad BM, Isleem WS, Shurrab A, Yaghi B, Qabaja YA, Hamdan FK, Sweity RR, Jneed RT, Assaf KA, Albandak ME, Hmaid MM, Awwad II, Alhabil BK, Alarda MN, Alsattari AS, Aboyousef MS, Aljbour OA, AlSharif R, Giacaman CT, Alnaga AY, Abu Nemer RM, Almadhoun NM, Skaik SM, Bottcher B, Abu-El-Noor N. PMID: 38166235; PMCID: PMC10803036.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    10. Common myths and misconceptions about breast cancer causation among Palestinian women: a national cross-sectional study. BMC Public Health. 2023 11 29; 23(1):2370. Elshami M, Ismail IO, Alser M, Al-Slaibi I, Ghithan RJ, Usrof FD, Qawasmi MAM, Okshiya HM, Shurrab NRS, Mahfouz II, Fannon AA, Hawa MRM, Giacaman N, Ahmaro M, Zaatreh RK, AbuKhalil WA, Melhim NK, Madbouh RJ, Hziema HJA, Lahlooh RA, Ubaiat SN, Jaffal NA, Alawna RK, Abed SN, Abuzahra BNA, Kwaik AJA, Dodin MH, Taha RO, Alashqar DM, Mobarak RA, Smerat T, Albarqi SI, Abu-El-Noor N, Bottcher B. PMID: 38031084; PMCID: PMC10688078.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    11. Anticipated time to seek medical advice for possible ovarian cancer symptoms and perceived barriers to early presentation among Palestinian women: a national cross-sectional study. BMC Cancer. 2023 Oct 13; 23(1):975. Elshami M, Al-Madhoun S, Alser M, Al-Slaibi I, Yaseen A, Tuffaha A, Jabr H, Ubaiat S, Khader S, Khraishi R, Jaber I, Arafeh ZA, Alqattaa A, Hadi AAE, Barhoush O, Hijazy M, Eleyan T, Alser A, Hziema AA, Shatat A, Almakhtoob F, Mohamad B, Farhat W, Abuamra Y, Mousa H, Adawi R, Musallam A, Albarqi SI, Abu-El-Noor N, Bottcher B. PMID: 37833659; PMCID: PMC10571332.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    12. Correction: Awareness of colorectal cancer signs and symptoms: a national cross-sectional study from Palestine. BMC Public Health. 2023 Sep 18; 23(1):1810. Elshami M, Ayyad M, Alser M, Al-Slaibi I, Naji SA, Mohamad BM, Isleem WS, Shurrab A, Yaghi B, Qabaja YA, Hmdan FK, Dwikat MF, Sweity RR, Jneed RT, Assaf KA, Albandak ME, Hmaid MM, Awwad II, Alhabil BK, Alarda MN, Alsattari AS, Aboyousef MS, Aljbour OA, AlSharif R, Giacaman CT, Alnaga AY, Nemer RMA, Almadhoun NM, Skaik SM, Abu-El-Noor N, Bottcher B. PMID: 37723487; PMCID: PMC10506334.
      View in: PubMed   Mentions:    Fields:    
    13. Myths and Misconceptions Around Lung Cancer Causation in Palestine: Is It Time to Intervene? JCO Glob Oncol. 2023 Sep; 9:e2300184. Elshami M, Mansour A, Alser M, Al-Slaibi I, Abukmail H, Shurrab H, Qassem S, Usrof FD, Alruzayqat M, Aqel W, Nairoukh R, Kittaneh R, Sawafta N, Habes YMN, Ghanim O, Aabed WA, Omar O, Daraghma M, Aljbour J, Elian REM, Zuhour A, Habes H, Al-Dadah M, Bottcher B, Abu-El-Noor N. PMID: 38085044; PMCID: PMC10730040.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    14. Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICs. Bioinformatics. 2023 05 04; 39(5). Lindegger J, Senol Cali D, Alser M, Gómez-Luna J, Ghiasi NM, Mutlu O. PMID: 36961334; PMCID: PMC10191611.
      View in: PubMed   Mentions:    Fields:    
    15. A framework for high-throughput sequence alignment using real processing-in-memory systems. Bioinformatics. 2023 05 04; 39(5). Diab S, Nassereldine A, Alser M, Gómez Luna J, Mutlu O, El Hajj I. PMID: 36971586; PMCID: PMC10159653.
      View in: PubMed   Mentions:    Fields:    
    16. Perceived barriers to early presentation and symptom-specific time to seek medical advice for possible colorectal cancer symptoms among Palestinians. Sci Rep. 2023 04 27; 13(1):6871. Elshami M, Ayyad M, Hamdan FK, Alser M, Al-Slaibi I, Naji SA, Mohamad BM, Isleem WS, Shurrab A, Yaghi B, Qabaja YA, Dwikat MF, Sweity RR, Jneed RT, Assaf KA, Albandak ME, Hmaid MM, Awwad II, Alhabil BK, Alarda MN, Alsattari AS, Aboyousef MS, Aljbour OA, AlSharif R, Giacaman CT, Alnaga AY, Nemer RMA, Almadhoun NM, Skaik SM, Abu-El-Noor N, Bottcher B. PMID: 37105988; PMCID: PMC10140026.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    17. BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis. NAR Genom Bioinform. 2023 Mar; 5(1):lqad004. Firtina C, Park J, Alser M, Kim JS, Cali DS, Shahroodi T, Ghiasi NM, Singh G, Kanellopoulos K, Alkan C, Mutlu O. PMID: 36685727; PMCID: PMC9853099.
      View in: PubMed   Mentions: 7  
    18. Current situation and future directions of lung cancer risk factor awareness in Palestine: a cross-sectional study. BMJ Open. 2023 01 17; 13(1):e061110. Elshami M, Mansour A, Alser M, Al-Slaibi I, Abukmail H, Shurrab H, Qassem S, Usrof FD, Alruzayqat M, Aqel W, Nairoukh R, Kittaneh R, Sawafta N, Habes YMN, Ghanim O, Aabed WA, Omar O, Daraghmeh M, Aljbour J, Elian REM, Zhor A, Habes H, Al-Dadah M, Abu-El-Noor N, Bottcher B. PMID: 36653053; PMCID: PMC9853137.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    19. Awareness of Palestinian Women About Breast Cancer Risk Factors: A National Cross-Sectional Study. JCO Glob Oncol. 2022 12; 8:e2200087. Elshami M, Usrof FD, Alser M, Al-Slaibi I, Okshiya HM, Ghithan RJ, Shurrab NRS, Ismail IO, Mahfouz II, Fannon AA, Qawasmi MAM, Hawa MRM, Giacaman N, Ahmaro M, Zaatreh RK, AbuKhalil WA, Melhim NK, Madbouh RJ, Abu Hziema HJ, Lahlooh RA, Ubaiat SN, Jaffal NA, Alawna RK, Abed SN, Abuzahra BNA, Abu Kwaik AJ, Dodin MH, Taha RO, Alashqar DM, Mobarak RA, Smerat T, Abu-El-Noor N, Bottcher B. PMID: 36508704; PMCID: PMC10166356.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    20. Awareness of human papillomavirus and acceptability of the vaccine among women in Palestine: is it time for policy adjustment? BMC Womens Health. 2022 08 19; 22(1):352. Elshami M, Abukmail H, Al-Slaibi I, Alser M, Radaydeh A, Alfuqaha A, Thalji M, Khader S, Khatib L, Fannoun N, Ahmad B, Kassab L, Khrishi H, Houssaini D, Abed N, Nammari A, Abdallah T, Alqudwa Z, Idais S, Tanbouz G, Hajajreh M, Selmiyh HA, Abo-Hajouj Z, Hebi H, Zamel M, Skaik RN, Hammoud L, Rjoub S, Ayesh H, Rjoub T, Zakout R, Alser A, Abu-El-Noor N, Bottcher B. PMID: 35986304; PMCID: PMC9389825.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCellsPHPublic Health
    21. From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures. Comput Struct Biotechnol J. 2022; 20:4579-4599. Alser M, Lindegger J, Firtina C, Almadhoun N, Mao H, Singh G, Gomez-Luna J, Mutlu O. PMID: 36090814; PMCID: PMC9436709.
      View in: PubMed   Mentions: 6  
    22. COVIDHunter: COVID-19 Pandemic Wave Prediction and Mitigation via Seasonality Aware Modeling. Front Public Health. 2022; 10:877621. Alser M, Kim JS, Almadhoun Alserr N, Tell SW, Mutlu O. PMID: 35784219; PMCID: PMC9247408.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    23. Awareness of Colorectal Cancer Risk Factors in Palestine: Where Do We Stand? JCO Glob Oncol. 2022 06; 8:e2200070. Elshami M, Dwikat MF, Al-Slaibi I, Alser M, Mohamad BM, Isleem WS, Shurrab A, Yaghi B, Qabaja YA, Naji SA, Hmdan FK, Ayyad MM, Sweity RR, Jneed RT, Assaf KA, Albandak ME, Hmaid MM, Awwad II, Alhabil BK, Alarda MN, Alsattari AS, Aboyousef MS, Aljbour OA, AlSharif R, Giacaman CT, Alnaga AY, Abu Nemer RM, Almadhoun NM, Skaik SM, Bottcher B, Abu-El-Noor N. PMID: 35696626; PMCID: PMC9225594.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    24. Awareness of colorectal cancer signs and symptoms: a national cross-sectional study from Palestine. BMC Public Health. 2022 04 30; 22(1):866. Elshami M, Ayyad M, Alser M, Al-Slaibi I, Ahmed Naji S, Mohamad BM, Sudki Isleem W, Shurrab A, Yaghi B, Qabaja YA, Hmdan FK, Fuad Dwikat M, Raed Sweity R, Jneed RT, Assaf KA, Albandak ME, Madhat Hmaid M, Awwad II, Khalil Alhabil B, Alarda MN, Saleh Alsattari A, Aboyousef MS, Aljbour OA, AlSharif R, Teddy Giacaman C, Alnaga AY, Nemer RMA, Almadhoun NM, Mahmoud Skaik S, Abu-El-Noor N, Bottcher B. PMID: 35501803; PMCID: PMC9063349.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    25. Women's awareness of breast cancer symptoms: a national cross-sectional study from Palestine. BMC Public Health. 2022 04 21; 22(1):801. Elshami M, Al-Slaibi I, Ghithan RJ, Alser M, Shurrab NR, Ismail IO, Mahfouz II, Fannon AA, Qawasmi MA, Hawa MR, Giacaman N, Ahmaro M, Okshiya HM, Zaatreh RK, AbuKhalil WA, Usrof FD, Melhim NK, Madbouh RJ, Hziema HJA, Lahlooh RA, Ubaiat SN, Jaffal NA, Alawna RK, Abed SN, Abuzahra BN, Kwaik AJA, Dodin MH, Taha RO, Alashqar DM, Mobarak RA, Smerat T, Abu-El-Noor N, Bottcher B. PMID: 35449048; PMCID: PMC9027340.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    26. Critical Assessment of Metagenome Interpretation: the second round of challenges. Nat Methods. 2022 04; 19(4):429-440. Meyer F, Fritz A, Deng ZL, Koslicki D, Lesker TR, Gurevich A, Robertson G, Alser M, Antipov D, Beghini F, Bertrand D, Brito JJ, Brown CT, Buchmann J, Buluç A, Chen B, Chikhi R, Clausen PTLC, Cristian A, Dabrowski PW, Darling AE, Egan R, Eskin E, Georganas E, Goltsman E, Gray MA, Hansen LH, Hofmeyr S, Huang P, Irber L, Jia H, Jørgensen TS, Kieser SD, Klemetsen T, Kola A, Kolmogorov M, Korobeynikov A, Kwan J, LaPierre N, Lemaitre C, Li C, Limasset A, Malcher-Miranda F, Mangul S, Marcelino VR, Marchet C, Marijon P, Meleshko D, Mende DR, Milanese A, Nagarajan N, Nissen J, Nurk S, Oliker L, Paoli L, Peterlongo P, Piro VC, Porter JS, Rasmussen S, Rees ER, Reinert K, Renard B, Robertsen EM, Rosen GL, Ruscheweyh HJ, Sarwal V, Segata N, Seiler E, Shi L, Sun F, Sunagawa S, Sørensen SJ, Thomas A, Tong C, Trajkovski M, Tremblay J, Uritskiy G, Vicedomini R, Wang Z, Wang Z, Wang Z, Warren A, Willassen NP, Yelick K, You R, Zeller G, Zhao Z, Zhu S, Zhu J, Garrido-Oter R, Gastmeier P, Hacquard S, Häußler S, Khaledi A, Maechler F, Mesny F, Radutoiu S, Schulze-Lefert P, Smit N, Strowig T, Bremges A, Sczyrba A, McHardy AC. PMID: 35396482; PMCID: PMC9007738.
      View in: PubMed   Mentions: 79     Fields:    Translation:Cells
    27. Awareness of Palestinians about lung cancer symptoms: a national cross-sectional study. BMC Pulm Med. 2022 Apr 08; 22(1):135. Elshami M, Abukmail H, Aqel W, Alser M, Al-Slaibi I, Shurrab H, Qassem S, Usrof FD, Alruzayqat M, Nairoukh R, Mansour A, Kittaneh R, Sawafta N, Habes YMN, Ghanim O, Aabed WA, Omar O, Daraghmeh M, Aljbour J, Elian R, Zuhour A, Habes H, Al-Dadah M, Abu-El-Noor N, Bottcher B. PMID: 35395762; PMCID: PMC8991725.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    28. Awareness of ovarian cancer risk and protective factors: A national cross-sectional study from Palestine. PLoS One. 2022; 17(3):e0265452. Elshami M, Tuffaha A, Yaseen A, Alser M, Al-Slaibi I, Jabr H, Ubaiat S, Khader S, Khraishi R, Jaber I, Abu Arafeh Z, Al-Madhoun S, Alqattaa A, Abd El Hadi A, Barhoush O, Hijazy M, Eleyan T, Alser A, Abu Hziema A, Shatat A, Almakhtoob F, Mohamad B, Farhat W, Abuamra Y, Mousa H, Adawi R, Musallam A, Abu-El-Noor N, Bottcher B. PMID: 35312720; PMCID: PMC8936444.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    29. Knowledge of ovarian cancer symptoms among women in Palestine: a national cross-sectional study. BMC Public Health. 2021 11 03; 21(1):1992. Elshami M, Yaseen A, Alser M, Al-Slaibi I, Jabr H, Ubaiat S, Tuffaha A, Khader S, Khraishi R, Jaber I, Arafeh ZA, Al-Madhoun S, Alqattaa A, El Hadi AA, Barhoush O, Hijazy M, Eleyan T, Alser A, Hziema AA, Shatat A, Almakhtoob F, Mohamad B, Farhat W, Abuamra Y, Mousa H, Adawi R, Musallam A, Abu-El-Noor N, Bottcher B. PMID: 34732142; PMCID: PMC8567700.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    30. Knowledge of cervical cancer risk factors among Palestinian women: a national cross-sectional study. BMC Womens Health. 2021 11 02; 21(1):385. Elshami M, Thalji M, Abukmail H, Al-Slaibi I, Alser M, Radaydeh A, Alfuqaha A, Khader S, Khatib L, Fannoun N, Ahmad B, Kassab L, Khrishi H, Elhussaini D, Abed N, Nammari A, Abdallah T, Alqudwa Z, Idais S, Tanbouz G, Hajajreh M, Selmiyh HA, Abo-Hajouj Z, Hebi H, Zamel M, Skaik RN, Hammoud L, Rjoub S, Ayesh H, Rjoub T, Zakout R, Alser A, Abu-El-Noor N, Bottcher B. PMID: 34727914; PMCID: PMC8561913.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    31. Knowledge of Palestinian women about cervical cancer warning signs: a national cross- sectional study. BMC Public Health. 2021 10 02; 21(1):1779. Elshami M, Al-Slaibi I, Abukmail H, Alser M, Radaydeh A, Alfuqaha A, Thalji M, Khader S, Khatib L, Fannoun N, Ahmad B, Kassab L, Khrishi H, Elhussaini D, Abed N, Nammari A, Abdallah T, Alqudwa Z, Idais S, Tanbouz G, Hajajreh M, Selmiyh HA, Abo-Hajouj Z, Hebi H, Zamel M, Skaik R, Hammoud L, Rjoub S, Ayesh H, Rjoub T, Zakout R, Alser A, Abu-El-Noor N, Bottcher B. PMID: 34598690; PMCID: PMC8487127.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    32. Technology dictates algorithms: recent developments in read alignment. Genome Biol. 2021 08 26; 22(1):249. Alser M, Rotman J, Deshpande D, Taraszka K, Shi H, Baykal PI, Yang HT, Xue V, Knyazev S, Singer BD, Balliu B, Koslicki D, Skums P, Zelikovsky A, Alkan C, Mutlu O, Mangul S. PMID: 34446078; PMCID: PMC8390189.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    33. SneakySnake: a fast and accurate universal genome pre-alignment filter for CPUs, GPUs and FPGAs. Bioinformatics. 2021 Apr 01; 36(22-23):5282-5290. Alser M, Shahroodi T, Gómez-Luna J, Alkan C, Mutlu O. PMID: 33315064.
      View in: PubMed   Mentions: 6     Fields:    
    34. Undergraduate medical students' attitudes towards medical errors and patient safety: a multi-center cross-sectional study in the Gaza Strip, Palestine. BMC Med Educ. 2020 Nov 19; 20(1):447. Alser M, Böttcher B, Alfaqawi M, Jlambo A, Abuzubaida W, Abu-El-Noor N. PMID: 33213439; PMCID: PMC7678054.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    35. Metalign: efficient alignment-based metagenomic profiling via containment min hash. Genome Biol. 2020 09 10; 21(1):242. LaPierre N, Alser M, Eskin E, Koslicki D, Mangul S. PMID: 32912225; PMCID: PMC7488264.
      View in: PubMed   Mentions: 17     Fields:    
    36. Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm. Bioinformatics. 2020 06 01; 36(12):3669-3679. Firtina C, Kim JS, Alser M, Senol Cali D, Cicek AE, Alkan C, Mutlu O. PMID: 32167530.
      View in: PubMed   Mentions: 16     Fields:    
    37. Shouji: a fast and efficient pre-alignment filter for sequence alignment. Bioinformatics. 2019 11 01; 35(21):4255-4263. Alser M, Hassan H, Kumar A, Mutlu O, Alkan C. PMID: 30923804; PMCID: PMC6821304.
      View in: PubMed   Mentions: 8     Fields:    
    38. MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples. BMC Genomics. 2019 Jun 06; 20(Suppl 5):423. LaPierre N, Mangul S, Alser M, Mandric I, Wu NC, Koslicki D, Eskin E. PMID: 31167634; PMCID: PMC6551237.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    39. GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies. BMC Genomics. 2018 May 09; 19(Suppl 2):89. Kim JS, Senol Cali D, Xin H, Lee D, Ghose S, Alser M, Hassan H, Ergin O, Alkan C, Mutlu O. PMID: 29764378; PMCID: PMC5954284.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    40. GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping. Bioinformatics. 2017 Nov 01; 33(21):3355-3363. Alser M, Hassan H, Xin H, Ergin O, Mutlu O, Alkan C. PMID: 28575161; PMCID: PMC5860160.
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