Bramsh Chandio

Title(s)Postdoctoral Scholar - Research Associate
SchoolKeck School of Medicine of Usc
Address4676 Admiralty Way
Off Campus
Marina Del Rey CA 90292
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Amyloid, Tau, and APOE in Alzheimer's Disease: Impact on White Matter Tracts. Pac Symp Biocomput. 2025; 30:394-411. Chandio BQ, Villalon-Reina JE, Nir TM, Thomopoulos SI, Feng Y, Benavidez S, Jahanshad N, Harezlak J, Garyfallidis E, Thompson PM, Alzheimer’s Disease Neuroimaging Initiative. PMID: 39670385.
      View in: PubMed   Mentions:
    2. MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI. ArXiv. 2024 Nov 14. Newlin NR, Schilling K, Koudoro S, Chandio BQ, Kanakaraj P, Moyer D, Kelly CE, Genc S, Chen J, Yang JY, Wu Y, He Y, Zhang J, Zeng Q, Zhang F, Adluru N, Nath V, Pathak S, Schneider W, Gade A, Rathi Y, Hendriks T, Vilanova A, Chamberland M, Pieciak T, Ciupek D, Vega AT, Aja-Fernández S, Malawski M, Ouedraogo G, Machnio J, Ewert C, Thompson PM, Jahanshad N, Garyfallidis E, Landman BA. PMID: 39606717; PMCID: PMC11601790.
      View in: PubMed   Mentions:
    3. BundleAGE: Predicting White Matter Age using Along-Tract Microstructural Profiles from Diffusion MRI. bioRxiv. 2024 Aug 19. Feng Y, Villalón-Reina JE, Nir TM, Chandio BQ, Jahanshad N, Thompson PM. PMID: 39229061; PMCID: PMC11370403.
      View in: PubMed   Mentions:
    4. Amyloid, Tau, and APOE in Alzheimer's Disease: Impact on White Matter Tracts. bioRxiv. 2024 Aug 06. Chandio BQ, Villalon-Reina JE, Nir TM, Thomopoulos SI, Feng Y, Benavidez S, Jahanshad N, Harezlak J, Garyfallidis E, Thompson PM, Alzheimer’s Disease Neuroimaging Initiative. PMID: 39149378; PMCID: PMC11326207.
      View in: PubMed   Mentions:
    5. Microstructural Mapping of Neural Pathways in Alzheimer's Disease using Macrostructure-Informed Normative Tractometry. bioRxiv. 2024 Apr 28. Feng Y, Chandio BQ, Villalon-Reina JE, Thomopoulos SI, Nir TM, Benavidez S, Laltoo E, Chattopadhyay T, Joshi H, Venkatasubramanian G, John JP, Jahanshad N, Reid RI, Jack CR, Weiner MW, Thompson PM, Alzheimers Disease Neuroimaging Initiative. PMID: 38712293; PMCID: PMC11071453.
      View in: PubMed   Mentions:
    6. Deep Normative Tractometry for Identifying Joint White Matter Macro- and Micro-structural Abnormalities in Alzheimer's Disease. bioRxiv. 2024 Feb 06. Feng Y, Chandio BQ, Villalon-Reina JE, Benavidez S, Chattopadhyay T, Chehrzadeh S, Laltoo E, Thomopoulos SI, Joshi H, Venkatasubramanian G, John JP, Jahanshad N, Thompson PM. PMID: 38370817; PMCID: PMC10871218.
      View in: PubMed   Mentions:
    7. Multi-Site Statistical Mapping of Along-Tract Microstructural Abnormalities in Bipolar Disorder with Diffusion MRI Tractometry. bioRxiv. 2023 Oct 25. Nabulsi L, Chandio BQ, McPhilemy G, Martyn FM, Roberts G, Hallahan B, Dannlowski U, Kircher T, Haarman B, Mitchell P, McDonald C, Cannon DM, Andreassen OA, Ching CRK, Thompson PM. PMID: 37662230; PMCID: PMC10473593.
      View in: PubMed   Mentions:
    8. BundleCleaner: Unsupervised Denoising and Subsampling of Diffusion MRI-Derived Tractography Data. bioRxiv. 2023 Aug 21. Feng Y, Chandio BQ, Villalón-Reina JE, Thomopoulos SI, Joshi H, Nair G, Joshi AA, Venkatasubramanian G, John JP, Thompson PM. PMID: 37662361; PMCID: PMC10473583.
      View in: PubMed   Mentions:
    9. Along-Tract Statistical Mapping of Microstructural Abnormalities in Bipolar Disorder: A Pilot Study. Annu Int Conf IEEE Eng Med Biol Soc. 2023 07; 2023:1-7. Nabulsi L, Chandio BQ, Dhinagar N, Laltoo E, McPhilemy G, Martyn FM, Hallahan B, McDonald C, Thompson PM, Cannon DM. PMID: 38083303.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    10. Variational Autoencoders for Generating Synthetic Tractography-Based Bundle Templates in a Low-Data Setting. Annu Int Conf IEEE Eng Med Biol Soc. 2023 07; 2023:1-6. Feng Y, Chandio BQ, Thomopoulos SI, Chattopadhyay T, Thompson PM. PMID: 38083771.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    11. Variational Autoencoders for Generating Synthetic Tractography-Based Bundle Templates in a Low-Data Setting. bioRxiv. 2023 May 09. Feng Y, Chandio BQ, Thomopoulos SI, Chattopadhyay T, Thompson PM. PMID: 36909490; PMCID: PMC10002615.
      View in: PubMed   Mentions:
    12. Along-Tract Statistical Mapping of Microstructural Abnormalities in Bipolar Disorder: A Pilot Study. bioRxiv. 2023 Mar 10. Nabulsi L, Chandio BQ, Dhinagar N, Laltoo E, McPhilemy G, Martyn FM, Hallahan B, McDonald C, Thompson PM, Cannon DM. PMID: 36945403; PMCID: PMC10028925.
      View in: PubMed   Mentions:
    13. BundleWarp, streamline-based nonlinear registration of white matter tracts. bioRxiv. 2023 Jan 05. Chandio BQ, Olivetti E, Romero-Bascones D, Harezlak J, Garyfallidis E. PMID: 36711974; PMCID: PMC9881938.
      View in: PubMed   Mentions:
    14. FiberNeat: Unsupervised White Matter Tract Filtering. Annu Int Conf IEEE Eng Med Biol Soc. 2022 07; 2022:5055-5061. Chandio BQ, Chattopadhyay T, Owens-Walton C, Reina JEV, Nabulsi L, Thomopoulos SI, Garyfallidis E, Thompson PM. PMID: 36085780.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    15. Learning white matter subject-specific segmentation from structural MRI. Med Phys. 2022 Apr; 49(4):2502-2513. Yang Q, Hansen CB, Cai LY, Rheault F, Lee HH, Bao S, Chandio BQ, Williams O, Resnick SM, Garyfallidis E, Anderson AW, Descoteaux M, Schilling KG, Landman BA. PMID: 35090192; PMCID: PMC9053869.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    16. Evaluating the Reliability of Human Brain White Matter Tractometry. Apert Neuro. 2021; 1(1). Kruper J, Yeatman JD, Richie-Halford A, Bloom D, Grotheer M, Caffarra S, Kiar G, Karipidis II, Roy E, Chandio BQ, Garyfallidis E, Rokem A. PMID: 35079748; PMCID: PMC8785971.
      View in: PubMed   Mentions: 29  
    17. Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? Neuroimage. 2021 11; 243:118502. Schilling KG, Rheault F, Petit L, Hansen CB, Nath V, Yeh FC, Girard G, Barakovic M, Rafael-Patino J, Yu T, Fischi-Gomez E, Pizzolato M, Ocampo-Pineda M, Schiavi S, Canales-Rodríguez EJ, Daducci A, Granziera C, Innocenti G, Thiran JP, Mancini L, Wastling S, Cocozza S, Petracca M, Pontillo G, Mancini M, Vos SB, Vakharia VN, Duncan JS, Melero H, Manzanedo L, Sanz-Morales E, Peña-Melián Á, Calamante F, Attyé A, Cabeen RP, Korobova L, Toga AW, Vijayakumari AA, Parker D, Verma R, Radwan A, Sunaert S, Emsell L, De Luca A, Leemans A, Bajada CJ, Haroon H, Azadbakht H, Chamberland M, Genc S, Tax CMW, Yeh PH, Srikanchana R, Mcknight CD, Yang JY, Chen J, Kelly CE, Yeh CH, Cochereau J, Maller JJ, Welton T, Almairac F, Seunarine KK, Clark CA, Zhang F, Makris N, Golby A, Rathi Y, O'Donnell LJ, Xia Y, Aydogan DB, Shi Y, Fernandes FG, Raemaekers M, Warrington S, Michielse S, Ramírez-Manzanares A, Concha L, Aranda R, Meraz MR, Lerma-Usabiaga G, Roitman L, Fekonja LS, Calarco N, Joseph M, Nakua H, Voineskos AN, Karan P, Grenier G, Legarreta JH, Adluru N, Nair VA, Prabhakaran V, Alexander AL, Kamagata K, Saito Y, Uchida W, Andica C, Abe M, Bayrak RG, Wheeler-Kingshott CAMG, D'Angelo E, Palesi F, Savini G, Rolandi N, Guevara P, Houenou J, López-López N, Mangin JF, Poupon C, Román C, Vázquez A, Maffei C, Arantes M, Andrade JP, Silva SM, Calhoun VD, Caverzasi E, Sacco S, Lauricella M, Pestilli F, Bullock D, Zhan Y, Brignoni-Perez E, Lebel C, Reynolds JE, Nestrasil I, Labounek R, Lenglet C, Paulson A, Aulicka S, Heilbronner SR, Heuer K, Chandio BQ, Guaje J, Tang W, Garyfallidis E, Raja R, Anderson AW, Landman BA, Descoteaux M. PMID: 34433094; PMCID: PMC8855321.
      View in: PubMed   Mentions: 60     Fields:    Translation:Humans
    18. Editorial for "Unraveling the MRI-Based Microstructural Signatures Behind Primary Progressive and Relapsing-Remitting Multiple Sclerosis Phenotypes". J Magn Reson Imaging. 2022 01; 55(1):164-165. Chandio BQ. PMID: 34296789.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    19. Pandora: 4-D White Matter Bundle Population-Based Atlases Derived from Diffusion MRI Fiber Tractography. Neuroinformatics. 2021 07; 19(3):447-460. Hansen CB, Yang Q, Lyu I, Rheault F, Kerley C, Chandio BQ, Fadnavis S, Williams O, Shafer AT, Resnick SM, Zald DH, Cutting LE, Taylor WD, Boyd B, Garyfallidis E, Anderson AW, Descoteaux M, Landman BA, Schilling KG. PMID: 33196967; PMCID: PMC8124084.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    20. Bundle analytics, a computational framework for investigating the shapes and profiles of brain pathways across populations. Sci Rep. 2020 10 13; 10(1):17149. Chandio BQ, Risacher SL, Pestilli F, Bullock D, Yeh FC, Koudoro S, Rokem A, Harezlak J, Garyfallidis E. PMID: 33051471; PMCID: PMC7555507.
      View in: PubMed   Mentions: 33     Fields:    Translation:Humans
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    NIH Funding Acknowledgment: Important - All publications resulting from the utilization of SC CTSI resources are required to credit the SC CTSI grant by including the NIH funding acknowledgment and must comply with the NIH Public Access Policy.

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