Jeanmarie Bouteiller, PhD

Title(s)Research Associate Professor of Biomedical Engineering
SchoolViterbi School of Engineering, Bme
AddressDenney Research Center (DRB)
University Park Campus
Los Angeles CA 90089-1111
Phone+1 213 740 9015
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    Jean-Marie Bouteiller joined the University of Southern California with a Masters in Electrical Engineering and Computer Science (from University of Montpellier, FRANCE) to start a PhD in Computational Neuroscience with Prof. Michel Baudry. With this dual competency in Neuroscience and Engineering, he joined in 2002 the laboratory of Prof. Theodore W. Berger to start the development of a unique computational synaptic modeling platform that would take into account the multitude of mechanisms that comprise presynaptic terminal, cleft and postsynaptic spine. This platform has substantially grown throughout the years to include a large number of mechanisms and modulatory pathways as well as astrocytic modulation, while extending its hierarchical structure to span multiple biological scales, from biomolecular mechanisms to synapse, neuron and neuronal network.
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Hydroxypropyl-Beta Cyclodextrin Barrier Prevents Respiratory Viral Infections: A Preclinical Study. Int J Mol Sci. 2024 Feb 08; 25(4). Lu A, Ebright B, Naik A, Tan HL, Cohen NA, Bouteiller JC, Lazzi G, Louie SG, Humayun MS, Asante I. PMID: 38396738.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    2. Machine learning enables non-Gaussian investigation of changes to peripheral nerves related to electrical stimulation. Sci Rep. 2024 02 02; 14(1):2795. Morales AW, Du J, Warren DJ, Fernández-Jover E, Martinez-Navarrete G, Bouteiller JC, McCreery DC, Lazzi G. PMID: 38307915; PMCID: PMC10837107.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    3. Impact of Retinal Degeneration on Response of ON and OFF Cone Bipolar Cells to Electrical Stimulation. IEEE Trans Neural Syst Rehabil Eng. 2023; 31:2424-2437. Farzad S, Kosta P, Iseri E, Walston ST, Bouteiller JC, Pfeiffer RL, Sigulinsky CL, Yang JH, Garcia JC, Anderson JR, Jones BW, Lazzi G. PMID: 37186528; PMCID: PMC10324560.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    4. Electrical Stimulation Induced Current Distribution in Peripheral Nerves Varies Significantly with the Extent of Nerve Damage: A Computational Study Utilizing Convolutional Neural Network and Realistic Nerve Models. Int J Neural Syst. 2023 Apr; 33(4):2350022. Du J, Morales A, Kosta P, Bouteiller JC, Martinez-Navarrete G, Warren DJ, Fernandez E, Lazzi G. PMID: 36916993; PMCID: PMC10561898.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    5. Computational optimization of delivery parameters to guide the development of targeted Nasal spray. Sci Rep. 2023 03 12; 13(1):4099. Du J, Shao X, Bouteiller JC, Lu A, Asante I, Louie S, Humayun MS, Lazzi G. PMID: 36907909; PMCID: PMC10008197.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    6. Hallmarks of neurodegenerative disease: A systems pharmacology perspective. CPT Pharmacometrics Syst Pharmacol. 2022 11; 11(11):1399-1429. Bloomingdale P, Karelina T, Ramakrishnan V, Bakshi S, Véronneau-Veilleux F, Moye M, Sekiguchi K, Meno-Tetang G, Mohan A, Maithreye R, Thomas VA, Gibbons F, Cabal A, Bouteiller JM, Geerts H. PMID: 35894182; PMCID: PMC9662204.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    7. Electrical Stimulation Induced Current Distribution in Peripheral Nerves Varies Significantly with the Extent of Nerve Damage: A Computational Study Utilizing Convolutional Neural Network and Realistic Nerve Models. Int Work Conf Interp Nat Artif Comput. 2022 May-Jun; 13258:526-535. Du J, Morales A, Kosta P, Bouteiller JC, Martinez G, Warren D, Fernandez E, Lazzi G. PMID: 37846407; PMCID: PMC10578432.
      View in: PubMed   Mentions: 1  
    8. Mechanisms underlying activation of retinal bipolar cells through targeted electrical stimulation: a computational study. J Neural Eng. 2021 12 15; 18(6). Paknahad J, Kosta P, Bouteiller JC, Humayun MS, Lazzi G. PMID: 34826830; PMCID: PMC8765079.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    9. Electrode Spacing and Current Distribution in Electrical Stimulation of Peripheral Nerve: A Computational Modeling Study using Realistic Nerve Models. Annu Int Conf IEEE Eng Med Biol Soc. 2021 11; 2021:4416-4419. Du J, Morales A, Paknahad J, Kosta P, Bouteiller JC, Fernandez E, Lazzi G. PMID: 34892199; PMCID: PMC10072138.
      View in: PubMed   Mentions: 4     Fields:    
    10. A Computational Model Simulates Light-Evoked Responses in the Retinal Cone Pathway. Annu Int Conf IEEE Eng Med Biol Soc. 2021 11; 2021:4482-4486. Iseri E, Kosta P, Paknahad J, Bouteiller JC, Lazzi G. PMID: 34892214; PMCID: PMC10578446.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    11. Modeling ON Cone Bipolar Cells for Electrical Stimulation. Annu Int Conf IEEE Eng Med Biol Soc. 2021 11; 2021:6547-6550. Paknahad J, Kosta P, Iseri E, Farzad S, Bouteiller JC, Humayun MS, Lazzi G. PMID: 34892609; PMCID: PMC8754156.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    12. Bridging Hierarchies in Multi-Scale Models of Neural Systems: Look-Up Tables Enable Computationally Efficient Simulations of Non-linear Synaptic Dynamics. Front Comput Neurosci. 2021; 15:733155. Pham DJ, Yu GJ, Bouteiller JC, Berger TW. PMID: 34658827; PMCID: PMC8517488.
      View in: PubMed   Mentions: 1  
    13. Topographic Organization of Correlation Along the Longitudinal and Transverse Axes in Rat Hippocampal CA3 Due to Excitatory Afferents. Front Comput Neurosci. 2020; 14:588881. Yu GJ, Bouteiller JC, Berger TW. PMID: 33328947; PMCID: PMC7715032.
      View in: PubMed   Mentions: 2  
    14. A Computational Model of the Cholinergic Modulation of CA1 Pyramidal Cell Activity. Front Comput Neurosci. 2020; 14:75. Mergenthal A, Bouteiller JC, Yu GJ, Berger TW. PMID: 33013341; PMCID: PMC7509450.
      View in: PubMed   Mentions: 4  
    15. Admittance Method for Estimating Local Field Potentials Generated in a Multi-Scale Neuron Model of the Hippocampus. Front Comput Neurosci. 2020; 14:72. Bingham CS, Paknahad J, Girard CBC, Loizos K, Bouteiller JC, Song D, Lazzi G, Berger TW. PMID: 32848687; PMCID: PMC7417331.
      View in: PubMed   Mentions: 7  
    16. A Computational Model of Mitochondria Motility in Axons. Annu Int Conf IEEE Eng Med Biol Soc. 2020 07; 2020:2287-2290. Zhu J, Lim Jethro JL, Li B, Mergenthal A, Rayes AA, Tang H, Berger TW, Bouteiller JC. PMID: 33018464; PMCID: PMC7962479.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    17. ROOTS: An Algorithm to Generate Biologically Realistic Cortical Axons and an Application to Electroceutical Modeling. Front Comput Neurosci. 2020; 14:13. Bingham CS, Mergenthal A, Bouteiller JC, Song D, Lazzi G, Berger TW. PMID: 32153379; PMCID: PMC7047217.
      View in: PubMed   Mentions: 2  
    18. Pathogenic Processes Underlying Alzheimer's Disease: Modeling the Effects of Amyloid Beta on Synaptic Transmission. Annu Int Conf IEEE Eng Med Biol Soc. 2019 Jul; 2019:1956-1959. Bouteiller JC, Mergenthal AR, Hu E, Berger TW. PMID: 31946282; PMCID: PMC7039439.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    19. Editorial: Influence of Inter- and Intra-Synaptic Factors on Information Processing in the Brain. Front Comput Neurosci. 2019; 13:32. Di Maio V, Bouteiller JC. PMID: 31164814; PMCID: PMC6536686.
      View in: PubMed   Mentions:
    20. Axonal Anatomy Optimizes Spatial Encoding in the Rat Entorhinal-Dentate System: A Computational Study. IEEE Trans Biomed Eng. 2019 10; 66(10):2728-2739. Yu GJ, Bouteiller JC, Song D, Berger TW. PMID: 30676938; PMCID: PMC6642851.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    21. A Glutamatergic Spine Model to Enable Multi-Scale Modeling of Nonlinear Calcium Dynamics. Front Comput Neurosci. 2018; 12:58. Hu E, Mergenthal A, Bingham CS, Song D, Bouteiller JM, Berger TW. PMID: 30100870; PMCID: PMC6072875.
      View in: PubMed   Mentions: 8  
    22. Graph-Based Models of Cortical Axons for the Prediction of Neuronal Response to Extracellular Electrical Stimulation. Annu Int Conf IEEE Eng Med Biol Soc. 2018 Jul; 2018:1380-1383. Bingham CS, Bouteiller JC, Song D, Berger TW. PMID: 30440649; PMCID: PMC6464815.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    23. Cholinergic Modulation of CA1 Pyramidal Cells via M1 Muscarinic Receptor Activation: A Computational Study at Physiological and Supraphysiological Levels. Annu Int Conf IEEE Eng Med Biol Soc. 2018 Jul; 2018:1396-1399. Mergenthal AR, Bouteiller JC, Berger TW. PMID: 30440653; PMCID: PMC6455917.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    24. Decoding Position to Analyze Spatial Information Encoding in a Large-Scale Neuronal Network Model of Rat Dentate Gyrus. Annu Int Conf IEEE Eng Med Biol Soc. 2018 Jul; 2018:6137-6140. Yu GJ, Bouteiller JC, Song D, Berger TW. PMID: 30441735; PMCID: PMC6391309.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    25. Model-Based Analysis of Electrode Placement and Pulse Amplitude for Hippocampal Stimulation. IEEE Trans Biomed Eng. 2018 10; 65(10):2278-2289. Bingham CS, Loizos K, Yu GJ, Gilbert A, Bouteiller JC, Song D, Lazzi G, Berger TW. PMID: 29993519; PMCID: PMC6224291.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    26. Development of a Computational Approach/Model to Explore NMDA Receptors Functions. Methods Mol Biol. 2017; 1677:291-306. Keller AF, Bouteiller JC, Berger TW. PMID: 28986881.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    27. A large-scale detailed neuronal model of electrical stimulation of the dentate gyrus and perforant path as a platform for electrode design and optimization. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:2794-2797. Bingham CS, Loizos K, Gilbert A, Bouteiller JM, Lazzi G, Berger TW. PMID: 28268898.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    28. Development of a detailed model of calcium dynamics at the postsynaptic spine of an excitatory synapse. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:6102-6105. Hu EY, Bouteiller JC, Berger TW. PMID: 28269645; PMCID: PMC7028388.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    29. Impact of synaptic localization and subunit composition of ionotropic glutamate receptors on synaptic function: modeling and simulation studies. IEEE/ACM Trans Comput Biol Bioinform. 2017 Jul-Aug; 14(4):892-904. Keller A, Ambert N, Legendre A, Bedez M, Bouteiller JM, Bischoff S, Baudry M, Moussaoui S. PMID: 27164603.
      View in: PubMed   Mentions:    Fields:    
    30. Impact of synaptic localization and subunit composition of ionotropic glutamate receptors on synaptic function: modeling and simulation studies. IEEE/ACM Trans Comput Biol Bioinform. 2017 Jul-Aug; 14(4):892-904. Keller A, Ambert N, Legendre A, Bedez M, Bouteiller JM, Bischoff S, Baudry M, Moussaoui S. PMID: 28113722.
      View in: PubMed   Mentions: 1     Fields:    
    31. Modeling and simulation of organophosphate-induced neurotoxicity: Prediction and validation by experimental studies. Neurotoxicology. 2016 05; 54:140-152. Greget R, Dadak S, Barbier L, Lauga F, Linossier-Pierre S, Pernot F, Legendre A, Ambert N, Bouteiller JM, Dorandeu F, Bischoff S, Baudry M, Fagni L, Moussaoui S. PMID: 27108687.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    32. Synaptic Efficacy as a Function of Ionotropic Receptor Distribution: A Computational Study. PLoS One. 2015; 10(10):e0140333. Allam SL, Bouteiller JM, Hu EY, Ambert N, Greget R, Bischoff S, Baudry M, Berger TW. PMID: 26480028; PMCID: PMC4610697.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    33. A fully parallel in time and space algorithm for simulating the electrical activity of a neural tissue. J Neurosci Methods. 2016 Jan 15; 257:17-25. Bedez M, Belhachmi Z, Haeberlé O, Greget R, Moussaoui S, Bouteiller JM, Bischoff S. PMID: 26424508.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    34. Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations. Front Comput Neurosci. 2015; 9:112. Hu EY, Bouteiller JM, Song D, Baudry M, Berger TW. PMID: 26441622; PMCID: PMC4585022.
      View in: PubMed   Mentions: 5  
    35. libRoadRunner: a high performance SBML simulation and analysis library. Bioinformatics. 2015 Oct 15; 31(20):3315-21. Somogyi ET, Bouteiller JM, Glazier JA, König M, Medley JK, Swat MH, Sauro HM. PMID: 26085503; PMCID: PMC4607739.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansCells
    36. The volterra functional series is a viable alternative to kinetic models for synaptic modeling--calibration and benchmarking. Annu Int Conf IEEE Eng Med Biol Soc. 2015; 2015:3291-4. Hu EY, Bouteiller JM, Song D, Berger TW. PMID: 26736995; PMCID: PMC4856223.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    37. A comparison between direct and indirect measurements of neurotransmitter vesicle release dynamics: a computational study. Annu Int Conf IEEE Eng Med Biol Soc. 2014; 2014:1155-8. Hu EY, Bouteiller JM, Huang M, Song D, Berger T. PMID: 25570168; PMCID: PMC4485406.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    38. A programmable analog subthreshold biomimetic model for bi-directional communication with the brain. Annu Int Conf IEEE Eng Med Biol Soc. 2013; 2013:787-90. Ghaderi VS, Song D, Bouteiller JM, Choma J, Berger TW. PMID: 24109805.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    39. Influence of ionotropic receptors localization on glutamatergic synaptic response to paired-pulse stimulation protocol. Annu Int Conf IEEE Eng Med Biol Soc. 2013; 2013:1037-40. Bouteiller JM, Allam SL, Ambert N, Greget R, Hu E, Bischoff S, Baudry M, Berger TW. PMID: 24109868; PMCID: PMC4157128.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    40. Insights on synaptic paired-pulse response using parametric and non-parametric models. Annu Int Conf IEEE Eng Med Biol Soc. 2013; 2013:1041-4. Bouteiller JM, Hu E, Allam SL, Ghaderi V, Song D, Berger TW. PMID: 24109869; PMCID: PMC4157129.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    41. A computational model to investigate astrocytic glutamate uptake influence on synaptic transmission and neuronal spiking. Front Comput Neurosci. 2012; 6:70. Allam SL, Ghaderi VS, Bouteiller JM, Legendre A, Ambert N, Greget R, Bischoff S, Baudry M, Berger TW. PMID: 23060782; PMCID: PMC3461576.
      View in: PubMed   Mentions: 21  
    42. Modeling of the nervous system: from modulation of glutamatergic and gabaergic molecular dynamics to neuron spiking activity. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:6612-5. Bouteiller JM, Legendre A, Allam SL, Ambert N, Hu EY, Greget R, Keller AF, Pernot F, Bischoff S, Baudry M, Berger TW. PMID: 23367445; PMCID: PMC4155903.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    43. Influence of ionotropic receptor location on their dynamics at glutamatergic synapses. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:1374-7. Allam SL, Bouteiller JM, Hu E, Greget R, Ambert N, Bischoff S, Baudry M, Berger TW. PMID: 23366155.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    44. Simulation of postsynaptic glutamate receptors reveals critical features of glutamatergic transmission. PLoS One. 2011; 6(12):e28380. Greget R, Pernot F, Bouteiller JM, Ghaderi V, Allam S, Keller AF, Ambert N, Legendre A, Sarmis M, Haeberle O, Faupel M, Bischoff S, Berger TW, Baudry M. PMID: 22194830; PMCID: PMC3240618.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    45. Integrated multiscale modeling of the nervous system: predicting changes in hippocampal network activity by a positive AMPA receptor modulator. IEEE Trans Biomed Eng. 2011 Oct; 58(10):3008-11. Bouteiller JM, Allam SL, Hu EY, Greget R, Ambert N, Keller AF, Bischoff S, Baudry M, Berger TW. PMID: 21642035; PMCID: PMC3397143.
      View in: PubMed   Mentions: 15     Fields:    
    46. Modeling of the nervous system: from molecular dynamics and synaptic modulation to neuron spiking activity. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:445-8. Bouteiller JM, Allam SL, Hu EY, Greget R, Ambert N, Keller AF, Pernot F, Bischoff S, Baudry M, Berger TW. PMID: 22254344.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    47. Modeling neuron-glia interactions: from parametric model to neuromorphic hardware. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:3581-4. Ghaderi VS, Allam SL, Ambert N, Bouteiller JM, Choma J, Berger TW. PMID: 22255113.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    48. Paired-pulse stimulation at glutamatergic synapses - pre- and postsynaptic components. Annu Int Conf IEEE Eng Med Biol Soc. 2010; 2010:787-90. Bouteiller JM, Allam SL, Greget R, Ambert N, Hu EY, Bischoff S, Baudry M, Berger TW. PMID: 21096110.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    49. Computational studies of NMDA receptors: differential effects of neuronal activity on efficacy of competitive and non-competitive antagonists. Open Access Bioinformatics. 2010; 2:113-125. Ambert N, Greget R, Haeberlé O, Bischoff S, Berger TW, Bouteiller JM, Baudry M. PMID: 21572937; PMCID: PMC3092546.
      View in: PubMed   Mentions: 15  
    50. Modeling glutamatergic synapses: insights into mechanisms regulating synaptic efficacy. J Integr Neurosci. 2008 Jun; 7(2):185-97. Bouteiller JM, Baudry M, Allam SL, Greget RJ, Bischoff S, Berger TW. PMID: 18763719; PMCID: PMC2947192.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    51. EONS: an online synaptic modeling platform. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:4155-8. Bouteiller JM, Qiu Y, Ziane MB, Baudry M, Berger TW. PMID: 17946227.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
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