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Exploring treatment-driven subclonal evolution of prognostic triple biomarkers: Dual gene fusions and chimeric RNA variants in novel subtypes of acute myeloid leukemia patients with KMT2A rearrangement. Drug Resist Updat. 2025 Jan 02; 79:101199.
Xu Y, Li SC, Xiao J, Liu Q, Cherukuri D, Liu Y, Mirshahidi S, Xu J, Chen X, Homa D, Olea J, Wu K, Kelly KR, Sun F, Huang R, Wang X, Wen Q, Zhang X, Ghiuzeli CM, Chong E, Abdel-Azim H, Reeves ME, Baylink DJ, Cao H, Zhong JF. PMID: 39823827.
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PubMed Mentions: Fields:
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Inferring single-cell spatial gene expression with tissue morphology via explainable deep learning. bioRxiv. 2024 Jun 14.
Zhao Y, Alizadeh E, Liu Y, Xu M, Mahoney JM, Li S. PMID: 38915550; PMCID: PMC11195284.
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Causal network perturbation analysis identifies known and novel type-2 diabetes driver genes. bioRxiv. 2024 May 26.
Zhao Y, Kumar P, Mahoney JM, He H, Baker C, George J, Li S. PMID: 38826370; PMCID: PMC11142180.
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Data-driven modeling of core gene regulatory network underlying leukemogenesis in IDH mutant AML. NPJ Syst Biol Appl. 2024 Apr 09; 10(1):38.
Katebi A, Chen X, Ramirez D, Li S, Lu M. PMID: 38594351; PMCID: PMC11003984.
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Translation:
Humans
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Quantifying Interpretation Reproducibility in Vision Transformer Models with TAVAC. bioRxiv. 2024 Jan 22.
Zhao Y, Agyemang D, Liu Y, Mahoney M, Li S. PMID: 38328179; PMCID: PMC10849480.
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Single-Cell Molecular Profiling of Head and Neck Squamous Cell Carcinoma Reveals Five Dysregulated Signaling Pathways Associated With Circulating Tumor Cells. Cancer Control. 2024 Jan-Dec; 31:10732748241251571.
Stucky A, Viet CT, Aouizerat BE, Ye Y, Doan C, Mundluru T, Sedhiazadeh P, Sinha UK, Chen X, Zhang X, Li SC, Cai J, Zhong JF. PMID: 38869038; PMCID: PMC11179551.
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Translation:
HumansCells
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BCR-ABL1-driven exosome-miR130b-3p-mediated gap-junction Cx43 MSC intercellular communications imply therapies of leukemic subclonal evolution. Theranostics. 2023; 13(12):3943-3963.
Chai C, Sui K, Tang J, Yu H, Yang C, Zhang H, Li SC, Zhong JF, Wang Z, Zhang X. PMID: 37554265; PMCID: PMC10405834.
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PubMed Mentions:
6 Fields:
Translation:
HumansCells
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Challenges and opportunities for modeling aging and cancer. Cancer Cell. 2023 04 10; 41(4):641-645.
Anczuków O, Airhart S, Chuang JH, Coussens LM, Kuchel GA, Korstanje R, Li S, Lucido AL, McAllister SS, Politi K, Polyak K, Ratliff T, Ren G, Trowbridge JJ, Ucar D, Palucka K. PMID: 37001528; PMCID: PMC10185379.
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PubMed Mentions:
4 Fields:
Translation:
Animals
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Inferring the Cancer Cellular Epigenome Heterogeneity via DNA Methylation Patterns. Cancer Treat Res. 2023; 190:375-393.
Li S. PMID: 38113008.
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Translation:
HumansCells
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NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity. Genome Biol. 2022 12 27; 23(1):270.
Su K, Katebi A, Kohar V, Clauss B, Gordin D, Qin ZS, Karuturi RKM, Li S, Lu M. PMID: 36575445; PMCID: PMC9793520.
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PubMed Mentions:
17 Fields:
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Interchromosomal interaction of homologous Stat92E alleles regulates transcriptional switch during stem-cell differentiation. Nat Commun. 2022 07 09; 13(1):3981.
Antel M, Raj R, Masoud MYG, Pan Z, Li S, Mellone BG, Inaba M. PMID: 35810185; PMCID: PMC9271046.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCells
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The Machine-Learning-Mediated Interface of Microbiome and Genetic Risk Stratification in Neuroblastoma Reveals Molecular Pathways Related to Patient Survival. Cancers (Basel). 2022 Jun 10; 14(12).
Li X, Wang X, Huang R, Stucky A, Chen X, Sun L, Wen Q, Zeng Y, Fletcher H, Wang C, Xu Y, Cao H, Sun F, Li SC, Zhang X, Zhong JF. PMID: 35740540; PMCID: PMC9220810.
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PubMed Mentions:
4
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Molecular Characterization of Differentiated-Resistance MSC Subclones by Single-Cell Transcriptomes. Front Cell Dev Biol. 2022; 10:699144.
Stucky A, Gao L, Li SC, Tu L, Luo J, Huang X, Chen X, Li X, Park TH, Cai J, Kabeer MH, Plant AS, Sun L, Zhang X, Zhong JF. PMID: 35356283; PMCID: PMC8959432.
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PubMed Mentions:
5
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Reply to Schramm, L. Comment on "Li et al. BDP1 Variants I1264M and V1347M Significantly Associated with Clinical Outcomes of Pediatric Neuroblastoma Patients Imply a New Prognostic Biomarker: A 121-Patient Cancer Genome Study. Diagnostics 2021, 11, 2364". Diagnostics (Basel). 2022 Mar 02; 12(3).
Li X, Sun L, Stucky A, Tu L, Cai J, Chen X, Wu Z, Jiang X, Li SC. PMID: 35328170; PMCID: PMC8947584.
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BDP1 Variants I1264M and V1347M Significantly Associated with Clinical Outcomes of Pediatric Neuroblastoma Patients Imply a New Prognostic Biomarker: A 121-Patient Cancer Genome Study. Diagnostics (Basel). 2021 Dec 15; 11(12).
Li X, Sun L, Stucky A, Tu L, Cai J, Chen X, Wu Z, Jiang X, Li SC. PMID: 34943600; PMCID: PMC8700758.
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PubMed Mentions:
4
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A convenient polyculture system that controls a shrimp viral disease with a high transmission rate. Commun Biol. 2021 11 11; 4(1):1276.
Wang M, Chen Y, Zhao Z, Weng S, Yang J, Liu S, Liu C, Yuan F, Ai B, Zhang H, Zhang M, Lu L, Yuan K, Yu Z, Mo B, Liu X, Gai C, Li Y, Lu R, Zhong Z, Zheng L, Feng G, Li SC, He J. PMID: 34764419; PMCID: PMC8585955.
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PubMed Mentions:
4 Translation:
AnimalsCells
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DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation. Genome Biol. 2021 10 18; 22(1):295.
Liu Y, Rosikiewicz W, Pan Z, Jillette N, Wang P, Taghbalout A, Foox J, Mason C, Carroll M, Cheng A, Li S. PMID: 34663425; PMCID: PMC8524990.
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PubMed Mentions:
81 Fields:
Translation:
HumansCells
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Network Topology of Biological Aging and Geroscience-Guided Approaches to COVID-19. Front Aging. 2021 Jul; 2.
Landay A, Bartley J, Banerjee D, Hargis G, Haynes L, Keshavarzian A, Kuo CL, Kwon OS, Li S, Li S, Oh J, Ozbolat IT, Ucar D, Xu M, Yao X, Unutmaz D, Kuchel GA. PMID: 35128530; PMCID: PMC8813169.
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PubMed Mentions:
3
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epihet for intra-tumoral epigenetic heterogeneity analysis and visualization. Sci Rep. 2021 01 11; 11(1):376.
Chen X, Ashoor H, Musich R, Wang J, Zhang M, Zhang C, Lu M, Li S. PMID: 33432081; PMCID: PMC7801679.
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PubMed Mentions:
4 Fields:
Translation:
Humans
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Corrigendum to: Microfluidic enrichment of plasma cells improves treatment of multiple myeloma. Mol Oncol. 2021 Jan; 15(1):317.
Zeng Y, Gao L, Luo X, Chen Y, Kabeer MH, Chen X, Stucky A, Loudon WG, Li SC, Zhang X, Zhong JF. PMID: 33398937; PMCID: PMC7782077.
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Evidence for AJUBA-catenin-CDH4-linked differentiation resistance of mesenchymal stem cells implies tumorigenesis and progression of head and neck squamous cell carcinoma: a single-cell transcriptome approach. Blood Genom. 2021; 5(1):29-39.
Stucky A, Gao L, Sun L, Li SC, Chen X, Park TH, Cai J, Kabeer MH, Zhang X, Sinha UK, Zhong JF. PMID: 34368804; PMCID: PMC8346230.
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PubMed Mentions:
3
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Circulating miRNA Spaceflight Signature Reveals Targets for Countermeasure Development. Cell Rep. 2020 12 08; 33(10):108448.
Malkani S, Chin CR, Cekanaviciute E, Mortreux M, Okinula H, Tarbier M, Schreurs AS, Shirazi-Fard Y, Tahimic CGT, Rodriguez DN, Sexton BS, Butler D, Verma A, Bezdan D, Durmaz C, MacKay M, Melnick A, Meydan C, Li S, Garrett-Bakelman F, Fromm B, Afshinnekoo E, Langhorst BW, Dimalanta ET, Cheng-Campbell M, Blaber E, Schisler JC, Vanderburg C, Friedländer MR, McDonald JT, Costes SV, Rutkove S, Grabham P, Mason CE, Beheshti A. PMID: 33242410; PMCID: PMC8441986.
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PubMed Mentions:
27 Fields:
Translation:
HumansAnimalsCells
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CUP-AI-Dx: A tool for inferring cancer tissue of origin and molecular subtype using RNA gene-expression data and artificial intelligence. EBioMedicine. 2020 Nov; 61:103030.
Zhao Y, Pan Z, Namburi S, Pattison A, Posner A, Balachander S, Paisie CA, Reddi HV, Rueter J, Gill AJ, Fox S, Raghav KPS, Flynn WF, Tothill RW, Li S, Karuturi RKM, George J. PMID: 33039710; PMCID: PMC7553237.
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PubMed Mentions:
40 Fields:
Translation:
Humans
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Lung mesenchymal cells elicit lipid storage in neutrophils that fuel breast cancer lung metastasis. Nat Immunol. 2020 11; 21(11):1444-1455.
Li P, Lu M, Shi J, Gong Z, Hua L, Li Q, Lim B, Zhang XH, Chen X, Li S, Shultz LD, Ren G. PMID: 32958928; PMCID: PMC7584447.
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PubMed Mentions:
84 Fields:
Translation:
HumansAnimalsCells
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Somatic Mutations Drive Specific, but Reversible, Epigenetic Heterogeneity States in AML. Cancer Discov. 2020 12; 10(12):1934-1949.
Li S, Chen X, Wang J, Meydan C, Glass JL, Shih AH, Delwel R, Levine RL, Mason CE, Melnick AM. PMID: 32938585; PMCID: PMC7710625.
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PubMed Mentions:
17 Fields:
Translation:
Humans
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HBA-DEALS: accurate and simultaneous identification of differential expression and splicing using hierarchical Bayesian analysis. Genome Biol. 2020 07 13; 21(1):171.
Karlebach G, Hansen P, Veiga DF, Steinhaus R, Danis D, Li S, Anczukow O, Robinson PN. PMID: 32660516; PMCID: PMC7358203.
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PubMed Mentions:
6 Fields:
Translation:
Cells
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ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization. Sci Adv. 2020 07; 6(28):eaay2078.
Lee B, Wang J, Cai L, Kim M, Namburi S, Tjong H, Feng Y, Wang P, Tang Z, Abbas A, Wei CL, Ruan Y, Li S. PMID: 32832596; PMCID: PMC7439456.
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PubMed Mentions:
14 Fields:
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The serine hydroxymethyltransferase-2 (SHMT2) initiates lymphoma development through epigenetic tumor suppressor silencing. Nat Cancer. 2020; 1:653-664.
Parsa S, Ortega-Molina A, Ying HY, Jiang M, Teater M, Wang J, Zhao C, Reznik E, Pasion JP, Kuo D, Mohan P, Wang S, Camarillo JM, Thomas PM, Jain N, Garcia-Bermudez J, Cho BK, Tam W, Kelleher NL, Socci N, Dogan A, De Stanchina E, Ciriello G, Green MR, Li S, Birsoy K, Melnick AM, Wendel HG. PMID: 33569544; PMCID: PMC7872152.
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PubMed Mentions:
27 Fields:
Translation:
Humans
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TET2 deficiency reprograms the germinal center B cell epigenome and silences genes linked to lymphomagenesis. Sci Adv. 2020 06; 6(25):eaay5872.
Rosikiewicz W, Chen X, Dominguez PM, Ghamlouch H, Aoufouchi S, Bernard OA, Melnick A, Li S. PMID: 32596441; PMCID: PMC7299612.
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PubMed Mentions:
20 Fields:
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CRISPR artificial splicing factors. Nat Commun. 2020 06 12; 11(1):2973.
Du M, Jillette N, Zhu JJ, Li S, Cheng AW. PMID: 32532987; PMCID: PMC7293279.
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PubMed Mentions:
54 Fields:
Translation:
HumansCells
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Loss of CHD1 Promotes Heterogeneous Mechanisms of Resistance to AR-Targeted Therapy via Chromatin Dysregulation. Cancer Cell. 2020 04 13; 37(4):584-598.e11.
Zhang Z, Zhou C, Li X, Barnes SD, Deng S, Hoover E, Chen CC, Lee YS, Zhang Y, Wang C, Metang LA, Wu C, Tirado CR, Johnson NA, Wongvipat J, Navrazhina K, Cao Z, Choi D, Huang CH, Linton E, Chen X, Liang Y, Mason CE, de Stanchina E, Abida W, Lujambio A, Li S, Lowe SW, Mendell JT, Malladi VS, Sawyers CL, Mu P. PMID: 32220301; PMCID: PMC7292228.
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PubMed Mentions:
71 Fields:
Translation:
HumansAnimalsCells
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Graph embedding and unsupervised learning predict genomic sub-compartments from HiC chromatin interaction data. Nat Commun. 2020 03 03; 11(1):1173.
Ashoor H, Chen X, Rosikiewicz W, Wang J, Cheng A, Wang P, Ruan Y, Li S. PMID: 32127534; PMCID: PMC7054322.
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PubMed Mentions:
23 Fields:
Translation:
HumansCells
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Molecular Biology and Evolution of Cancer: From Discovery to Action. Mol Biol Evol. 2020 02 01; 37(2):320-326.
Somarelli JA, Gardner H, Cannataro VL, Gunady EF, Boddy AM, Johnson NA, Fisk JN, Gaffney SG, Chuang JH, Li S, Ciccarelli FD, Panchenko AR, Megquier K, Kumar S, Dornburg A, DeGregori J, Townsend JP. PMID: 31642480; PMCID: PMC6993850.
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PubMed Mentions:
36 Fields:
Translation:
Humans
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CRIF1 as a potential target to improve the radiosensitivity of osteosarcoma. Proc Natl Acad Sci U S A. 2019 10 08; 116(41):20511-20516.
Ran Q, Jin F, Xiang Y, Xiang L, Wang Q, Li F, Chen L, Zhang Y, Wu C, Zhou L, Xiao Y, Chen L, Wu J, Zhong JF, Li SC, Li Z. PMID: 31548420; PMCID: PMC6789918.
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PubMed Mentions:
11 Fields:
Translation:
HumansAnimalsCells
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Enhanced CRISPR-based DNA demethylation by Casilio-ME-mediated RNA-guided coupling of methylcytosine oxidation and DNA repair pathways. Nat Commun. 2019 Sep 20; 10(1):4296.
Taghbalout A, Du M, Jillette N, Rosikiewicz W, Rath A, Heinen CD, Li S, Cheng AW. PMID: 31541098; PMCID: PMC6754513.
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PubMed Mentions:
19 Fields:
Translation:
HumansCells
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Ontogeny and Biology of Human Small Airway Epithelial Club Cells. Am J Respir Crit Care Med. 2018 12 01; 198(11):1375-1388.
Zuo WL, Shenoy SA, Li S, O'Beirne SL, Strulovici-Barel Y, Leopold PL, Wang G, Staudt MR, Walters MS, Mason C, Kaner RJ, Mezey JG, Crystal RG. PMID: 29874100; PMCID: PMC6290945.
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PubMed Mentions:
53 Fields:
Translation:
HumansCells
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TET2 Deficiency Causes Germinal Center Hyperplasia, Impairs Plasma Cell Differentiation, and Promotes B-cell Lymphomagenesis. Cancer Discov. 2018 12; 8(12):1632-1653.
Dominguez PM, Ghamlouch H, Rosikiewicz W, Kumar P, Béguelin W, Fontán L, Rivas MA, Pawlikowska P, Armand M, Mouly E, Torres-Martin M, Doane AS, Calvo Fernandez MT, Durant M, Della-Valle V, Teater M, Cimmino L, Droin N, Tadros S, Motanagh S, Shih AH, Rubin MA, Tam W, Aifantis I, Levine RL, Elemento O, Inghirami G, Green MR, Figueroa ME, Bernard OA, Aoufouchi S, Li S, Shaknovich R, Melnick AM. PMID: 30274972; PMCID: PMC6279514.
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PubMed Mentions:
85 Fields:
Translation:
HumansAnimalsCells
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Relapse pathway of glioblastoma revealed by single-cell molecular analysis. Carcinogenesis. 2018 07 03; 39(7):931-936.
Chen X, Wen Q, Stucky A, Zeng Y, Gao S, Loudon WG, Ho HW, Kabeer MH, Li SC, Zhang X, Zhong JF. PMID: 29718126; PMCID: PMC6248540.
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PubMed Mentions:
17 Fields:
Translation:
HumansCells
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Extracellular vesicles in DLBCL provide abundant clues to aberrant transcriptional programming and genomic alterations. Blood. 2018 08 16; 132(7):e13-e23.
Rutherford SC, Fachel AA, Li S, Sawh S, Muley A, Ishii J, Saxena A, Dominguez PM, Caldas Lopes E, Agirre X, Chambwe N, Correa F, Jiang Y, Richards KL, Betel D, Shaknovich R. PMID: 29967128; PMCID: PMC6265635.
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PubMed Mentions:
19 Fields:
Translation:
HumansCells
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Microfluidic enrichment of plasma cells improves treatment of multiple myeloma. Mol Oncol. 2018 06; 12(7):1004-1011.
Zeng Y, Gao L, Luo X, Chen Y, Kabeer MH, Chen X, Stucky A, Loudon WG, Li SC, Zhang X, Zhong JF. PMID: 29638042; PMCID: PMC6026869.
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PubMed Mentions:
7 Fields:
Translation:
HumansCells
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Jak1 Integrates Cytokine Sensing to Regulate Hematopoietic Stem Cell Function and Stress Hematopoiesis. Cell Stem Cell. 2017 10 05; 21(4):489-501.e7.
Kleppe M, Spitzer MH, Li S, Hill CE, Dong L, Papalexi E, De Groote S, Bowman RL, Keller M, Koppikar P, Rapaport FT, Teruya-Feldstein J, Gandara J, Mason CE, Nolan GP, Levine RL. PMID: 28965767; PMCID: PMC5847260.
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PubMed Mentions:
34 Fields:
Translation:
AnimalsCells
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Genetic and epigenetic heterogeneity and the impact on cancer relapse. Exp Hematol. 2017 10; 54:26-30.
Hassan C, Afshinnekoo E, Li S, Wu S, Mason CE. PMID: 28705639; PMCID: PMC5651672.
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PubMed Mentions:
18 Fields:
Translation:
Humans
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Tissue Elasticity Bridges Cancer Stem Cells to the Tumor Microenvironment Through microRNAs: Implications for a "Watch-and-Wait" Approach to Cancer. Curr Stem Cell Res Ther. 2017; 12(6):455-470.
Li SC, Vu LT, Luo JJ, Zhong JF, Li Z, Dethlefs BA, Loudon WG, Kabeer MH. PMID: 28270089; PMCID: PMC5587377.
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PubMed Mentions:
14 Fields:
Translation:
HumansAnimalsCells
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Distinct evolution and dynamics of epigenetic and genetic heterogeneity in acute myeloid leukemia. Nat Med. 2016 07; 22(7):792-9.
Li S, Garrett-Bakelman FE, Chung SS, Sanders MA, Hricik T, Rapaport F, Patel J, Dillon R, Vijay P, Brown AL, Perl AE, Cannon J, Bullinger L, Luger S, Becker M, Lewis ID, To LB, Delwel R, Löwenberg B, Döhner H, Döhner K, Guzman ML, Hassane DC, Roboz GJ, Grimwade D, Valk PJ, D'Andrea RJ, Carroll M, Park CY, Neuberg D, Levine R, Melnick AM, Mason CE. PMID: 27322744; PMCID: PMC4938719.
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PubMed Mentions:
201 Fields:
Translation:
HumansCells
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Genetic and epigenetic heterogeneity in acute myeloid leukemia. Curr Opin Genet Dev. 2016 02; 36:100-6.
Li S, Mason CE, Melnick A. PMID: 27162099; PMCID: PMC4903929.
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PubMed Mentions:
60 Fields:
Translation:
HumansCells
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A benchmark for RNA-seq quantification pipelines. Genome Biol. 2016 Apr 23; 17:74.
Teng M, Love MI, Davis CA, Djebali S, Dobin A, Graveley BR, Li S, Mason CE, Olson S, Pervouchine D, Sloan CA, Wei X, Zhan L, Irizarry RA. PMID: 27107712; PMCID: PMC4842274.
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PubMed Mentions:
90 Fields:
Translation:
HumansAnimals
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Clinical Genomics: Challenges and Opportunities. Crit Rev Eukaryot Gene Expr. 2016; 26(2):97-113.
Vijay P, McIntyre AB, Mason CE, Greenfield JP, Li S. PMID: 27480773; PMCID: PMC5470591.
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PubMed Mentions:
6 Fields:
Translation:
HumansCells
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Correction: Tissue elasticity regulated tumor gene expression: implication for diagnostic biomarkers of primitive neuroectodermal tumor. PLoS One. 2015; 10(5):e0128504.
Vu LT, Keschrumrus V, Zhang X, Zhong JF, Su Q, Kabeer MH, Loudon WG, Li SC. PMID: 25992612; PMCID: PMC4438055.
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PubMed Mentions:
1 Fields:
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Tissue elasticity regulated tumor gene expression: implication for diagnostic biomarkers of primitive neuroectodermal tumor. PLoS One. 2015; 10(3):e0120336.
Vu LT, Keschrumrus V, Zhang X, Zhong JF, Su Q, Kabeer MH, Loudon WG, Li SC. PMID: 25774514; PMCID: PMC4361745.
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PubMed Mentions:
7 Fields:
Translation:
HumansCells
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Interaction of infectious spleen and kidney necrosis virus ORF119L with PINCH leads to dominant-negative inhibition of integrin-linked kinase and cardiovascular defects in zebrafish. J Virol. 2015 Jan; 89(1):763-75.
Yuan JM, He BL, Yang LY, Guo CJ, Weng SP, Li SC, He JG. PMID: 25355883; PMCID: PMC4301147.
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PubMed Mentions:
2 Fields:
Translation:
AnimalsCells
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Dynamic evolution of clonal epialleles revealed by methclone. Genome Biol. 2014 Sep 27; 15(9):472.
Li S, Garrett-Bakelman F, Perl AE, Luger SM, Zhang C, To BL, Lewis ID, Brown AL, D'Andrea RJ, Ross ME, Levine R, Carroll M, Melnick A, Mason CE. PMID: 25260792; PMCID: PMC4242486.
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PubMed Mentions:
47 Fields:
Translation:
HumansCells
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Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures. Nat Commun. 2014 Sep 25; 5:5125.
Munro SA, Lund SP, Pine PS, Binder H, Clevert DA, Conesa A, Dopazo J, Fasold M, Hochreiter S, Hong H, Jafari N, Kreil DP, Labaj PP, Li S, Liao Y, Lin SM, Meehan J, Mason CE, Santoyo-Lopez J, Setterquist RA, Shi L, Shi W, Smyth GK, Stralis-Pavese N, Su Z, Tong W, Wang C, Wang J, Xu J, Ye Z, Yang Y, Yu Y, Salit M. PMID: 25254650.
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PubMed Mentions:
76 Fields:
Translation:
Humans
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Detecting and correcting systematic variation in large-scale RNA sequencing data. Nat Biotechnol. 2014 Sep; 32(9):888-95.
Li S, Labaj PP, Zumbo P, Sykacek P, Shi W, Shi L, Phan J, Wu PY, Wang M, Wang C, Thierry-Mieg D, Thierry-Mieg J, Kreil DP, Mason CE. PMID: 25150837; PMCID: PMC4160374.
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PubMed Mentions:
101 Fields:
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Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study. Nat Biotechnol. 2014 Sep; 32(9):915-925.
Li S, Tighe SW, Nicolet CM, Grove D, Levy S, Farmerie W, Viale A, Wright C, Schweitzer PA, Gao Y, Kim D, Boland J, Hicks B, Kim R, Chhangawala S, Jafari N, Raghavachari N, Gandara J, Garcia-Reyero N, Hendrickson C, Roberson D, Rosenfeld J, Smith T, Underwood JG, Wang M, Zumbo P, Baldwin DA, Grills GS, Mason CE. PMID: 25150835; PMCID: PMC4167418.
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PubMed Mentions:
125 Fields:
Translation:
Cells
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The pivotal regulatory landscape of RNA modifications. Annu Rev Genomics Hum Genet. 2014; 15:127-50.
Li S, Mason CE. PMID: 24898039.
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PubMed Mentions:
182 Fields:
Translation:
AnimalsCells
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Identification of kinase fusion oncogenes in post-Chernobyl radiation-induced thyroid cancers. J Clin Invest. 2013 Nov; 123(11):4935-44.
Ricarte-Filho JC, Li S, Garcia-Rendueles ME, Montero-Conde C, Voza F, Knauf JA, Heguy A, Viale A, Bogdanova T, Thomas GA, Mason CE, Fagin JA. PMID: 24135138; PMCID: PMC3809792.
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PubMed Mentions:
103 Fields:
Translation:
HumansAnimalsCells
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An optimized algorithm for detecting and annotating regional differential methylation. BMC Bioinformatics. 2013; 14 Suppl 5:S10.
Li S, Garrett-Bakelman FE, Akalin A, Zumbo P, Levine R, To BL, Lewis ID, Brown AL, D'Andrea RJ, Melnick A, Mason CE. PMID: 23735126; PMCID: PMC3622633.
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PubMed Mentions:
61 Fields:
Translation:
HumansCells
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Relapse-specific mutations in NT5C2 in childhood acute lymphoblastic leukemia. Nat Genet. 2013 Mar; 45(3):290-4.
Meyer JA, Wang J, Hogan LE, Yang JJ, Dandekar S, Patel JP, Tang Z, Zumbo P, Li S, Zavadil J, Levine RL, Cardozo T, Hunger SP, Raetz EA, Evans WE, Morrison DJ, Mason CE, Carroll WL. PMID: 23377183; PMCID: PMC3681285.
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PubMed Mentions:
149 Fields:
Translation:
HumansCells
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Mandarin fish caveolin 1 interaction with major capsid protein of infectious spleen and kidney necrosis virus and its role in early stages of infection. J Virol. 2013 Mar; 87(6):3027-38.
Jia KT, Wu YY, Liu ZY, Mi S, Zheng YW, He J, Weng SP, Li SC, He JG, Guo CJ. PMID: 23283951; PMCID: PMC3592132.
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PubMed Mentions:
14 Fields:
Translation:
AnimalsCells
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methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles. Genome Biol. 2012 Oct 03; 13(10):R87.
Akalin A, Kormaksson M, Li S, Garrett-Bakelman FE, Figueroa ME, Melnick A, Mason CE. PMID: 23034086; PMCID: PMC3491415.
View in:
PubMed Mentions:
953 Fields:
Translation:
HumansCells
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Sodium coupled bicarbonate influx regulates intracellular and apical pH in cultured rat caput epididymal epithelium. PLoS One. 2011; 6(8):e22283.
Zuo WL, Li S, Huang JH, Yang DL, Zhang G, Chen SL, Ruan YC, Ye KN, Cheng CH, Zhou WL. PMID: 21887217; PMCID: PMC3159570.
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AnimalsCells
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Tyrosine phosphorylation modulates store-operated calcium entry in cultured rat epididymal basal cells. J Cell Physiol. 2011 Apr; 226(4):1069-73.
Zuo WL, Du JY, Huang JH, Li S, Zhang G, Chen SL, Ruan YC, Cheng CH, Zhou WL. PMID: 20857412.
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AnimalsCells
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Functional studies of acid transporter in cultured rat epididymal cell. Fertil Steril. 2010 May 15; 93(8):2744-9.
Zuo WL, Huang JH, Shan JJ, Li S, Wong PY, Zhou WL. PMID: 20362281.
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Stimulating effects of dopamine on chloride transport across the rat caudal epididymal epithelium in culture. Biol Reprod. 2009 Jan; 80(1):13-23.
Du JY, Zuo WL, Ruan YC, Yang ZH, Chen MH, Chen SL, Li S, Wu ZL, Xiang H, Zhou WL. PMID: 18784353.
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Animals