Sheng Li

Title(s)Associate Professor of Biochemistry and Molecular Medicine
SchoolKeck School of Medicine of Usc
Address1441 Eastlake Ave.
Health Sciences Campus
Los Angeles CA 90033
ORCID ORCID Icon0000-0002-9543-6274 Additional info
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    Other Positions
    Title(s)Co-leader of the Epigenetic Regulation in Cancer (ERC) Program


    Collapse Biography 
    Collapse Awards and Honors
    Leukemia & Lymphoma Society 2024  - 2029Career Development Program Scholar Award
    American Association for Cancer Research2020  - 2021NextGen Star
    National Institute of General Medical Sciences2019  - 2024Maximizing Investigators' Research Award
    Leukemia Research Foundation2017  - 2018New Investigator Award

    Collapse Overview 

    Collapse Research 
    Collapse Research Activities and Funding
    Multi-omic phenotyping of human transcriptional regulators
    NIH U01HG013175Sep 11, 2023 - Jul 31, 2028
    Role: Principal Investigator
    3D Genome Reorganization and Epigenome Dynamics of Clonal Hematopoiesis
    NIH R56AG071766Sep 15, 2022 - Aug 31, 2023
    Role: Principal Investigator
    Impact of aging and clonal hematopoiesis on epigenetic heterogeneity, evolvability, and leukemogenesis
    NIH U01CA271830Sep 23, 2021 - Aug 31, 2026
    Role: Principal Investigator
    An Integrative Computational Framework for DNA Hydroxymethylation Data Mining and Interpretation
    NIH R35GM133562Aug 1, 2019 - Jul 31, 2024
    Role: Principal Investigator

    Collapse Featured Content 
    Collapse Twitter

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Inferring single-cell spatial gene expression with tissue morphology via explainable deep learning. bioRxiv. 2024 Jun 14. Zhao Y, Alizadeh E, Liu Y, Xu M, Mahoney JM, Li S. PMID: 38915550; PMCID: PMC11195284.
      View in: PubMed   Mentions:
    2. Causal network perturbation analysis identifies known and novel type-2 diabetes driver genes. bioRxiv. 2024 May 26. Zhao Y, Kumar P, Mahoney JM, He H, Baker C, George J, Li S. PMID: 38826370; PMCID: PMC11142180.
      View in: PubMed   Mentions:
    3. Data-driven modeling of core gene regulatory network underlying leukemogenesis in IDH mutant AML. NPJ Syst Biol Appl. 2024 Apr 09; 10(1):38. Katebi A, Chen X, Ramirez D, Li S, Lu M. PMID: 38594351; PMCID: PMC11003984.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    4. Quantifying Interpretation Reproducibility in Vision Transformer Models with TAVAC. bioRxiv. 2024 Jan 22. Zhao Y, Agyemang D, Liu Y, Mahoney M, Li S. PMID: 38328179; PMCID: PMC10849480.
      View in: PubMed   Mentions:
    5. Single-Cell Molecular Profiling of Head and Neck Squamous Cell Carcinoma Reveals Five Dysregulated Signaling Pathways Associated With Circulating Tumor Cells. Cancer Control. 2024 Jan-Dec; 31:10732748241251571. Stucky A, Viet CT, Aouizerat BE, Ye Y, Doan C, Mundluru T, Sedhiazadeh P, Sinha UK, Chen X, Zhang X, Li SC, Cai J, Zhong JF. PMID: 38869038; PMCID: PMC11179551.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    6. BCR-ABL1-driven exosome-miR130b-3p-mediated gap-junction Cx43 MSC intercellular communications imply therapies of leukemic subclonal evolution. Theranostics. 2023; 13(12):3943-3963. Chai C, Sui K, Tang J, Yu H, Yang C, Zhang H, Li SC, Zhong JF, Wang Z, Zhang X. PMID: 37554265; PMCID: PMC10405834.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    7. Challenges and opportunities for modeling aging and cancer. Cancer Cell. 2023 04 10; 41(4):641-645. Anczuków O, Airhart S, Chuang JH, Coussens LM, Kuchel GA, Korstanje R, Li S, Lucido AL, McAllister SS, Politi K, Polyak K, Ratliff T, Ren G, Trowbridge JJ, Ucar D, Palucka K. PMID: 37001528; PMCID: PMC10185379.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    8. Inferring the Cancer Cellular Epigenome Heterogeneity via DNA Methylation Patterns. Cancer Treat Res. 2023; 190:375-393. Li S. PMID: 38113008.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    9. NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity. Genome Biol. 2022 12 27; 23(1):270. Su K, Katebi A, Kohar V, Clauss B, Gordin D, Qin ZS, Karuturi RKM, Li S, Lu M. PMID: 36575445; PMCID: PMC9793520.
      View in: PubMed   Mentions: 13     Fields:    
    10. Interchromosomal interaction of homologous Stat92E alleles regulates transcriptional switch during stem-cell differentiation. Nat Commun. 2022 07 09; 13(1):3981. Antel M, Raj R, Masoud MYG, Pan Z, Li S, Mellone BG, Inaba M. PMID: 35810185; PMCID: PMC9271046.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    11. The Machine-Learning-Mediated Interface of Microbiome and Genetic Risk Stratification in Neuroblastoma Reveals Molecular Pathways Related to Patient Survival. Cancers (Basel). 2022 Jun 10; 14(12). Li X, Wang X, Huang R, Stucky A, Chen X, Sun L, Wen Q, Zeng Y, Fletcher H, Wang C, Xu Y, Cao H, Sun F, Li SC, Zhang X, Zhong JF. PMID: 35740540; PMCID: PMC9220810.
      View in: PubMed   Mentions: 5  
    12. Molecular Characterization of Differentiated-Resistance MSC Subclones by Single-Cell Transcriptomes. Front Cell Dev Biol. 2022; 10:699144. Stucky A, Gao L, Li SC, Tu L, Luo J, Huang X, Chen X, Li X, Park TH, Cai J, Kabeer MH, Plant AS, Sun L, Zhang X, Zhong JF. PMID: 35356283; PMCID: PMC8959432.
      View in: PubMed   Mentions: 3  
    13. Reply to Schramm, L. Comment on "Li et al. BDP1 Variants I1264M and V1347M Significantly Associated with Clinical Outcomes of Pediatric Neuroblastoma Patients Imply a New Prognostic Biomarker: A 121-Patient Cancer Genome Study. Diagnostics 2021, 11, 2364". Diagnostics (Basel). 2022 Mar 02; 12(3). Li X, Sun L, Stucky A, Tu L, Cai J, Chen X, Wu Z, Jiang X, Li SC. PMID: 35328170; PMCID: PMC8947584.
      View in: PubMed   Mentions:
    14. BDP1 Variants I1264M and V1347M Significantly Associated with Clinical Outcomes of Pediatric Neuroblastoma Patients Imply a New Prognostic Biomarker: A 121-Patient Cancer Genome Study. Diagnostics (Basel). 2021 Dec 15; 11(12). Li X, Sun L, Stucky A, Tu L, Cai J, Chen X, Wu Z, Jiang X, Li SC. PMID: 34943600; PMCID: PMC8700758.
      View in: PubMed   Mentions: 4  
    15. A convenient polyculture system that controls a shrimp viral disease with a high transmission rate. Commun Biol. 2021 11 11; 4(1):1276. Wang M, Chen Y, Zhao Z, Weng S, Yang J, Liu S, Liu C, Yuan F, Ai B, Zhang H, Zhang M, Lu L, Yuan K, Yu Z, Mo B, Liu X, Gai C, Li Y, Lu R, Zhong Z, Zheng L, Feng G, Li SC, He J. PMID: 34764419; PMCID: PMC8585955.
      View in: PubMed   Mentions: 3  Translation:AnimalsCells
    16. DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation. Genome Biol. 2021 10 18; 22(1):295. Liu Y, Rosikiewicz W, Pan Z, Jillette N, Wang P, Taghbalout A, Foox J, Mason C, Carroll M, Cheng A, Li S. PMID: 34663425; PMCID: PMC8524990.
      View in: PubMed   Mentions: 70     Fields:    Translation:HumansCells
    17. Network Topology of Biological Aging and Geroscience-Guided Approaches to COVID-19. Front Aging. 2021 Jul; 2. Landay A, Bartley J, Banerjee D, Hargis G, Haynes L, Keshavarzian A, Kuo CL, Kwon OS, Li S, Li S, Oh J, Ozbolat IT, Ucar D, Xu M, Yao X, Unutmaz D, Kuchel GA. PMID: 35128530; PMCID: PMC8813169.
      View in: PubMed   Mentions: 3  
    18. epihet for intra-tumoral epigenetic heterogeneity analysis and visualization. Sci Rep. 2021 01 11; 11(1):376. Chen X, Ashoor H, Musich R, Wang J, Zhang M, Zhang C, Lu M, Li S. PMID: 33432081; PMCID: PMC7801679.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    19. Corrigendum to: Microfluidic enrichment of plasma cells improves treatment of multiple myeloma. Mol Oncol. 2021 Jan; 15(1):317. Zeng Y, Gao L, Luo X, Chen Y, Kabeer MH, Chen X, Stucky A, Loudon WG, Li SC, Zhang X, Zhong JF. PMID: 33398937; PMCID: PMC7782077.
      View in: PubMed   Mentions:    Fields:    
    20. Evidence for AJUBA-catenin-CDH4-linked differentiation resistance of mesenchymal stem cells implies tumorigenesis and progression of head and neck squamous cell carcinoma: a single-cell transcriptome approach. Blood Genom. 2021; 5(1):29-39. Stucky A, Gao L, Sun L, Li SC, Chen X, Park TH, Cai J, Kabeer MH, Zhang X, Sinha UK, Zhong JF. PMID: 34368804; PMCID: PMC8346230.
      View in: PubMed   Mentions: 1  
    21. Circulating miRNA Spaceflight Signature Reveals Targets for Countermeasure Development. Cell Rep. 2020 12 08; 33(10):108448. Malkani S, Chin CR, Cekanaviciute E, Mortreux M, Okinula H, Tarbier M, Schreurs AS, Shirazi-Fard Y, Tahimic CGT, Rodriguez DN, Sexton BS, Butler D, Verma A, Bezdan D, Durmaz C, MacKay M, Melnick A, Meydan C, Li S, Garrett-Bakelman F, Fromm B, Afshinnekoo E, Langhorst BW, Dimalanta ET, Cheng-Campbell M, Blaber E, Schisler JC, Vanderburg C, Friedländer MR, McDonald JT, Costes SV, Rutkove S, Grabham P, Mason CE, Beheshti A. PMID: 33242410; PMCID: PMC8441986.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansAnimalsCells
    22. CUP-AI-Dx: A tool for inferring cancer tissue of origin and molecular subtype using RNA gene-expression data and artificial intelligence. EBioMedicine. 2020 Nov; 61:103030. Zhao Y, Pan Z, Namburi S, Pattison A, Posner A, Balachander S, Paisie CA, Reddi HV, Rueter J, Gill AJ, Fox S, Raghav KPS, Flynn WF, Tothill RW, Li S, Karuturi RKM, George J. PMID: 33039710; PMCID: PMC7553237.
      View in: PubMed   Mentions: 38     Fields:    Translation:Humans
    23. Lung mesenchymal cells elicit lipid storage in neutrophils that fuel breast cancer lung metastasis. Nat Immunol. 2020 11; 21(11):1444-1455. Li P, Lu M, Shi J, Gong Z, Hua L, Li Q, Lim B, Zhang XH, Chen X, Li S, Shultz LD, Ren G. PMID: 32958928; PMCID: PMC7584447.
      View in: PubMed   Mentions: 71     Fields:    Translation:HumansAnimalsCells
    24. Somatic Mutations Drive Specific, but Reversible, Epigenetic Heterogeneity States in AML. Cancer Discov. 2020 12; 10(12):1934-1949. Li S, Chen X, Wang J, Meydan C, Glass JL, Shih AH, Delwel R, Levine RL, Mason CE, Melnick AM. PMID: 32938585; PMCID: PMC7710625.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    25. HBA-DEALS: accurate and simultaneous identification of differential expression and splicing using hierarchical Bayesian analysis. Genome Biol. 2020 07 13; 21(1):171. Karlebach G, Hansen P, Veiga DF, Steinhaus R, Danis D, Li S, Anczukow O, Robinson PN. PMID: 32660516; PMCID: PMC7358203.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    26. ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization. Sci Adv. 2020 07; 6(28):eaay2078. Lee B, Wang J, Cai L, Kim M, Namburi S, Tjong H, Feng Y, Wang P, Tang Z, Abbas A, Wei CL, Ruan Y, Li S. PMID: 32832596; PMCID: PMC7439456.
      View in: PubMed   Mentions: 14     Fields:    
    27. The serine hydroxymethyltransferase-2 (SHMT2) initiates lymphoma development through epigenetic tumor suppressor silencing. Nat Cancer. 2020; 1:653-664. Parsa S, Ortega-Molina A, Ying HY, Jiang M, Teater M, Wang J, Zhao C, Reznik E, Pasion JP, Kuo D, Mohan P, Wang S, Camarillo JM, Thomas PM, Jain N, Garcia-Bermudez J, Cho BK, Tam W, Kelleher NL, Socci N, Dogan A, De Stanchina E, Ciriello G, Green MR, Li S, Birsoy K, Melnick AM, Wendel HG. PMID: 33569544; PMCID: PMC7872152.
      View in: PubMed   Mentions: 25     Fields:    Translation:Humans
    28. TET2 deficiency reprograms the germinal center B cell epigenome and silences genes linked to lymphomagenesis. Sci Adv. 2020 06; 6(25):eaay5872. Rosikiewicz W, Chen X, Dominguez PM, Ghamlouch H, Aoufouchi S, Bernard OA, Melnick A, Li S. PMID: 32596441; PMCID: PMC7299612.
      View in: PubMed   Mentions: 18     Fields:    
    29. CRISPR artificial splicing factors. Nat Commun. 2020 06 12; 11(1):2973. Du M, Jillette N, Zhu JJ, Li S, Cheng AW. PMID: 32532987; PMCID: PMC7293279.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCells
    30. Loss of CHD1 Promotes Heterogeneous Mechanisms of Resistance to AR-Targeted Therapy via Chromatin Dysregulation. Cancer Cell. 2020 04 13; 37(4):584-598.e11. Zhang Z, Zhou C, Li X, Barnes SD, Deng S, Hoover E, Chen CC, Lee YS, Zhang Y, Wang C, Metang LA, Wu C, Tirado CR, Johnson NA, Wongvipat J, Navrazhina K, Cao Z, Choi D, Huang CH, Linton E, Chen X, Liang Y, Mason CE, de Stanchina E, Abida W, Lujambio A, Li S, Lowe SW, Mendell JT, Malladi VS, Sawyers CL, Mu P. PMID: 32220301; PMCID: PMC7292228.
      View in: PubMed   Mentions: 60     Fields:    Translation:HumansAnimalsCells
    31. Graph embedding and unsupervised learning predict genomic sub-compartments from HiC chromatin interaction data. Nat Commun. 2020 03 03; 11(1):1173. Ashoor H, Chen X, Rosikiewicz W, Wang J, Cheng A, Wang P, Ruan Y, Li S. PMID: 32127534; PMCID: PMC7054322.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    32. Molecular Biology and Evolution of Cancer: From Discovery to Action. Mol Biol Evol. 2020 02 01; 37(2):320-326. Somarelli JA, Gardner H, Cannataro VL, Gunady EF, Boddy AM, Johnson NA, Fisk JN, Gaffney SG, Chuang JH, Li S, Ciccarelli FD, Panchenko AR, Megquier K, Kumar S, Dornburg A, DeGregori J, Townsend JP. PMID: 31642480; PMCID: PMC6993850.
      View in: PubMed   Mentions: 33     Fields:    Translation:Humans
    33. CRIF1 as a potential target to improve the radiosensitivity of osteosarcoma. Proc Natl Acad Sci U S A. 2019 10 08; 116(41):20511-20516. Ran Q, Jin F, Xiang Y, Xiang L, Wang Q, Li F, Chen L, Zhang Y, Wu C, Zhou L, Xiao Y, Chen L, Wu J, Zhong JF, Li SC, Li Z. PMID: 31548420; PMCID: PMC6789918.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    34. Enhanced CRISPR-based DNA demethylation by Casilio-ME-mediated RNA-guided coupling of methylcytosine oxidation and DNA repair pathways. Nat Commun. 2019 Sep 20; 10(1):4296. Taghbalout A, Du M, Jillette N, Rosikiewicz W, Rath A, Heinen CD, Li S, Cheng AW. PMID: 31541098; PMCID: PMC6754513.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    35. Ontogeny and Biology of Human Small Airway Epithelial Club Cells. Am J Respir Crit Care Med. 2018 12 01; 198(11):1375-1388. Zuo WL, Shenoy SA, Li S, O'Beirne SL, Strulovici-Barel Y, Leopold PL, Wang G, Staudt MR, Walters MS, Mason C, Kaner RJ, Mezey JG, Crystal RG. PMID: 29874100; PMCID: PMC6290945.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansCells
    36. TET2 Deficiency Causes Germinal Center Hyperplasia, Impairs Plasma Cell Differentiation, and Promotes B-cell Lymphomagenesis. Cancer Discov. 2018 12; 8(12):1632-1653. Dominguez PM, Ghamlouch H, Rosikiewicz W, Kumar P, Béguelin W, Fontán L, Rivas MA, Pawlikowska P, Armand M, Mouly E, Torres-Martin M, Doane AS, Calvo Fernandez MT, Durant M, Della-Valle V, Teater M, Cimmino L, Droin N, Tadros S, Motanagh S, Shih AH, Rubin MA, Tam W, Aifantis I, Levine RL, Elemento O, Inghirami G, Green MR, Figueroa ME, Bernard OA, Aoufouchi S, Li S, Shaknovich R, Melnick AM. PMID: 30274972; PMCID: PMC6279514.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansAnimalsCells
    37. Relapse pathway of glioblastoma revealed by single-cell molecular analysis. Carcinogenesis. 2018 07 03; 39(7):931-936. Chen X, Wen Q, Stucky A, Zeng Y, Gao S, Loudon WG, Ho HW, Kabeer MH, Li SC, Zhang X, Zhong JF. PMID: 29718126; PMCID: PMC6248540.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    38. Extracellular vesicles in DLBCL provide abundant clues to aberrant transcriptional programming and genomic alterations. Blood. 2018 08 16; 132(7):e13-e23. Rutherford SC, Fachel AA, Li S, Sawh S, Muley A, Ishii J, Saxena A, Dominguez PM, Caldas Lopes E, Agirre X, Chambwe N, Correa F, Jiang Y, Richards KL, Betel D, Shaknovich R. PMID: 29967128; PMCID: PMC6265635.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    39. Microfluidic enrichment of plasma cells improves treatment of multiple myeloma. Mol Oncol. 2018 06; 12(7):1004-1011. Zeng Y, Gao L, Luo X, Chen Y, Kabeer MH, Chen X, Stucky A, Loudon WG, Li SC, Zhang X, Zhong JF. PMID: 29638042; PMCID: PMC6026869.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    40. Jak1 Integrates Cytokine Sensing to Regulate Hematopoietic Stem Cell Function and Stress Hematopoiesis. Cell Stem Cell. 2017 10 05; 21(4):489-501.e7. Kleppe M, Spitzer MH, Li S, Hill CE, Dong L, Papalexi E, De Groote S, Bowman RL, Keller M, Koppikar P, Rapaport FT, Teruya-Feldstein J, Gandara J, Mason CE, Nolan GP, Levine RL. PMID: 28965767; PMCID: PMC5847260.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    41. Genetic and epigenetic heterogeneity and the impact on cancer relapse. Exp Hematol. 2017 10; 54:26-30. Hassan C, Afshinnekoo E, Li S, Wu S, Mason CE. PMID: 28705639; PMCID: PMC5651672.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    42. Tissue Elasticity Bridges Cancer Stem Cells to the Tumor Microenvironment Through microRNAs: Implications for a "Watch-and-Wait" Approach to Cancer. Curr Stem Cell Res Ther. 2017; 12(6):455-470. Li SC, Vu LT, Luo JJ, Zhong JF, Li Z, Dethlefs BA, Loudon WG, Kabeer MH. PMID: 28270089; PMCID: PMC5587377.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    43. Distinct evolution and dynamics of epigenetic and genetic heterogeneity in acute myeloid leukemia. Nat Med. 2016 07; 22(7):792-9. Li S, Garrett-Bakelman FE, Chung SS, Sanders MA, Hricik T, Rapaport F, Patel J, Dillon R, Vijay P, Brown AL, Perl AE, Cannon J, Bullinger L, Luger S, Becker M, Lewis ID, To LB, Delwel R, Löwenberg B, Döhner H, Döhner K, Guzman ML, Hassane DC, Roboz GJ, Grimwade D, Valk PJ, D'Andrea RJ, Carroll M, Park CY, Neuberg D, Levine R, Melnick AM, Mason CE. PMID: 27322744; PMCID: PMC4938719.
      View in: PubMed   Mentions: 188     Fields:    Translation:HumansCells
    44. Genetic and epigenetic heterogeneity in acute myeloid leukemia. Curr Opin Genet Dev. 2016 02; 36:100-6. Li S, Mason CE, Melnick A. PMID: 27162099; PMCID: PMC4903929.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansCells
    45. A benchmark for RNA-seq quantification pipelines. Genome Biol. 2016 Apr 23; 17:74. Teng M, Love MI, Davis CA, Djebali S, Dobin A, Graveley BR, Li S, Mason CE, Olson S, Pervouchine D, Sloan CA, Wei X, Zhan L, Irizarry RA. PMID: 27107712; PMCID: PMC4842274.
      View in: PubMed   Mentions: 89     Fields:    Translation:HumansAnimals
    46. Clinical Genomics: Challenges and Opportunities. Crit Rev Eukaryot Gene Expr. 2016; 26(2):97-113. Vijay P, McIntyre AB, Mason CE, Greenfield JP, Li S. PMID: 27480773; PMCID: PMC5470591.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    47. Correction: Tissue elasticity regulated tumor gene expression: implication for diagnostic biomarkers of primitive neuroectodermal tumor. PLoS One. 2015; 10(5):e0128504. Vu LT, Keschrumrus V, Zhang X, Zhong JF, Su Q, Kabeer MH, Loudon WG, Li SC. PMID: 25992612; PMCID: PMC4438055.
      View in: PubMed   Mentions: 1     Fields:    
    48. Tissue elasticity regulated tumor gene expression: implication for diagnostic biomarkers of primitive neuroectodermal tumor. PLoS One. 2015; 10(3):e0120336. Vu LT, Keschrumrus V, Zhang X, Zhong JF, Su Q, Kabeer MH, Loudon WG, Li SC. PMID: 25774514; PMCID: PMC4361745.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    49. Interaction of infectious spleen and kidney necrosis virus ORF119L with PINCH leads to dominant-negative inhibition of integrin-linked kinase and cardiovascular defects in zebrafish. J Virol. 2015 Jan; 89(1):763-75. Yuan JM, He BL, Yang LY, Guo CJ, Weng SP, Li SC, He JG. PMID: 25355883; PMCID: PMC4301147.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    50. Dynamic evolution of clonal epialleles revealed by methclone. Genome Biol. 2014 Sep 27; 15(9):472. Li S, Garrett-Bakelman F, Perl AE, Luger SM, Zhang C, To BL, Lewis ID, Brown AL, D'Andrea RJ, Ross ME, Levine R, Carroll M, Melnick A, Mason CE. PMID: 25260792; PMCID: PMC4242486.
      View in: PubMed   Mentions: 47     Fields:    Translation:HumansCells
    51. Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures. Nat Commun. 2014 Sep 25; 5:5125. Munro SA, Lund SP, Pine PS, Binder H, Clevert DA, Conesa A, Dopazo J, Fasold M, Hochreiter S, Hong H, Jafari N, Kreil DP, Labaj PP, Li S, Liao Y, Lin SM, Meehan J, Mason CE, Santoyo-Lopez J, Setterquist RA, Shi L, Shi W, Smyth GK, Stralis-Pavese N, Su Z, Tong W, Wang C, Wang J, Xu J, Ye Z, Yang Y, Yu Y, Salit M. PMID: 25254650.
      View in: PubMed   Mentions: 75     Fields:    Translation:Humans
    52. Detecting and correcting systematic variation in large-scale RNA sequencing data. Nat Biotechnol. 2014 Sep; 32(9):888-95. Li S, Labaj PP, Zumbo P, Sykacek P, Shi W, Shi L, Phan J, Wu PY, Wang M, Wang C, Thierry-Mieg D, Thierry-Mieg J, Kreil DP, Mason CE. PMID: 25150837; PMCID: PMC4160374.
      View in: PubMed   Mentions: 99     Fields:    
    53. Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study. Nat Biotechnol. 2014 Sep; 32(9):915-925. Li S, Tighe SW, Nicolet CM, Grove D, Levy S, Farmerie W, Viale A, Wright C, Schweitzer PA, Gao Y, Kim D, Boland J, Hicks B, Kim R, Chhangawala S, Jafari N, Raghavachari N, Gandara J, Garcia-Reyero N, Hendrickson C, Roberson D, Rosenfeld J, Smith T, Underwood JG, Wang M, Zumbo P, Baldwin DA, Grills GS, Mason CE. PMID: 25150835; PMCID: PMC4167418.
      View in: PubMed   Mentions: 120     Fields:    Translation:Cells
    54. The pivotal regulatory landscape of RNA modifications. Annu Rev Genomics Hum Genet. 2014; 15:127-50. Li S, Mason CE. PMID: 24898039.
      View in: PubMed   Mentions: 176     Fields:    Translation:AnimalsCells
    55. Identification of kinase fusion oncogenes in post-Chernobyl radiation-induced thyroid cancers. J Clin Invest. 2013 Nov; 123(11):4935-44. Ricarte-Filho JC, Li S, Garcia-Rendueles ME, Montero-Conde C, Voza F, Knauf JA, Heguy A, Viale A, Bogdanova T, Thomas GA, Mason CE, Fagin JA. PMID: 24135138; PMCID: PMC3809792.
      View in: PubMed   Mentions: 102     Fields:    Translation:HumansAnimalsCells
    56. An optimized algorithm for detecting and annotating regional differential methylation. BMC Bioinformatics. 2013; 14 Suppl 5:S10. Li S, Garrett-Bakelman FE, Akalin A, Zumbo P, Levine R, To BL, Lewis ID, Brown AL, D'Andrea RJ, Melnick A, Mason CE. PMID: 23735126; PMCID: PMC3622633.
      View in: PubMed   Mentions: 61     Fields:    Translation:HumansCells
    57. Relapse-specific mutations in NT5C2 in childhood acute lymphoblastic leukemia. Nat Genet. 2013 Mar; 45(3):290-4. Meyer JA, Wang J, Hogan LE, Yang JJ, Dandekar S, Patel JP, Tang Z, Zumbo P, Li S, Zavadil J, Levine RL, Cardozo T, Hunger SP, Raetz EA, Evans WE, Morrison DJ, Mason CE, Carroll WL. PMID: 23377183; PMCID: PMC3681285.
      View in: PubMed   Mentions: 148     Fields:    Translation:HumansCells
    58. Mandarin fish caveolin 1 interaction with major capsid protein of infectious spleen and kidney necrosis virus and its role in early stages of infection. J Virol. 2013 Mar; 87(6):3027-38. Jia KT, Wu YY, Liu ZY, Mi S, Zheng YW, He J, Weng SP, Li SC, He JG, Guo CJ. PMID: 23283951; PMCID: PMC3592132.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    59. methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles. Genome Biol. 2012 Oct 03; 13(10):R87. Akalin A, Kormaksson M, Li S, Garrett-Bakelman FE, Figueroa ME, Melnick A, Mason CE. PMID: 23034086; PMCID: PMC3491415.
      View in: PubMed   Mentions: 880     Fields:    Translation:HumansCells
    60. Sodium coupled bicarbonate influx regulates intracellular and apical pH in cultured rat caput epididymal epithelium. PLoS One. 2011; 6(8):e22283. Zuo WL, Li S, Huang JH, Yang DL, Zhang G, Chen SL, Ruan YC, Ye KN, Cheng CH, Zhou WL. PMID: 21887217; PMCID: PMC3159570.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    61. Tyrosine phosphorylation modulates store-operated calcium entry in cultured rat epididymal basal cells. J Cell Physiol. 2011 Apr; 226(4):1069-73. Zuo WL, Du JY, Huang JH, Li S, Zhang G, Chen SL, Ruan YC, Cheng CH, Zhou WL. PMID: 20857412.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    62. Functional studies of acid transporter in cultured rat epididymal cell. Fertil Steril. 2010 May 15; 93(8):2744-9. Zuo WL, Huang JH, Shan JJ, Li S, Wong PY, Zhou WL. PMID: 20362281.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    63. Stimulating effects of dopamine on chloride transport across the rat caudal epididymal epithelium in culture. Biol Reprod. 2009 Jan; 80(1):13-23. Du JY, Zuo WL, Ruan YC, Yang ZH, Chen MH, Chen SL, Li S, Wu ZL, Xiang H, Zhou WL. PMID: 18784353.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
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