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Structure-guided design of anti-cancer ribonucleotide reductase inhibitors. J Enzyme Inhib Med Chem. 2019 Dec; 34(1):438-450.
Misko TA, Liu YT, Harris ME, Oleinick NL, Pink J, Lee HY, Dealwis CG. PMID: 30734609.
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PubMed Mentions:
1 Fields:
Translation:
HumansCells
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An Ontology for Facilitating Discussion of Catalytic Strategies of RNA-Cleaving Enzymes. ACS Chem Biol. 2019 06 21; 14(6):1068-1076.
Bevilacqua PC, Harris ME, Piccirilli JA, Gaines C, Ganguly A, Kostenbader K, Ekesan S, York DM. PMID: 31095369.
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PubMed Mentions:
5 Fields:
Translation:
Cells
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Distributive enzyme binding controlled by local RNA context results in 3' to 5' directional processing of dicistronic tRNA precursors by Escherichia coli ribonuclease P. Nucleic Acids Res. 2019 02 20; 47(3):1451-1467.
Zhao J, Harris ME. PMID: 30496557.
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PubMed Mentions: Fields:
Translation:
Cells
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Evidence That Nucleophile Deprotonation Exceeds Bond Formation in the HDV Ribozyme Transition State. Biochemistry. 2018 06 26; 57(25):3465-3472.
PMID: 29733591.
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HumansCells
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Structure-Guided Synthesis and Mechanistic Studies Reveal Sweetspots on Naphthyl Salicyl Hydrazone Scaffold as Non-Nucleosidic Competitive, Reversible Inhibitors of Human Ribonucleotide Reductase. J Med Chem. 2018 02 08; 61(3):666-680.
PMID: 29253340.
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PubMed Mentions: Fields:
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HumansCells
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Kinetic Isotope Effect Analysis of RNA 2'-O-Transphosphorylation. Methods Enzymol. 2017; 596:433-457.
PMID: 28911780.
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PubMed Mentions: Fields:
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Cells
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Phylogenetic sequence analysis and functional studies reveal compensatory amino acid substitutions in loop 2 of human ribonucleotide reductase. J Biol Chem. 2017 10 06; 292(40):16463-16476.
Knappenberger AJ, Grandhi S, Sheth R, Ahmad MF, Viswanathan R, Harris ME. PMID: 28808063.
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Translation:
HumansCells
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Potent competitive inhibition of human ribonucleotide reductase by a nonnucleoside small molecule. Proc Natl Acad Sci U S A. 2017 08 01; 114(31):8241-8246.
PMID: 28716944.
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PubMed Mentions:
6 Fields:
Translation:
HumansCells
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The contribution of the C5 protein subunit of Escherichia coli ribonuclease P to specificity for precursor tRNA is modulated by proximal 5' leader sequences. RNA. 2017 10; 23(10):1502-1511.
Niland CN, Anderson DR, Jankowsky E, Harris ME. PMID: 28694328.
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PubMed Mentions:
3 Fields:
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Mapping specificity landscapes of RNA-protein interactions by high throughput sequencing. Methods. 2017 04 15; 118-119:111-118.
PMID: 28263887.
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PubMed Mentions:
3 Fields:
Translation:
HumansAnimalsCells
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Rules of RNA specificity of hnRNP A1 revealed by global and quantitative analysis of its affinity distribution. Proc Natl Acad Sci U S A. 2017 02 28; 114(9):2206-2211.
PMID: 28193894.
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PubMed Mentions:
14 Fields:
Translation:
HumansCells
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Preface. Methods Enzymol. 2017; 596:xv-xviii.
Harris ME, Anderson VE. PMID: 28911786.
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PubMed Mentions: Fields:
Translation:
Cells
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Inhibition of soluble guanylyl cyclase by small molecules targeting the catalytic domain. FEBS Lett. 2016 Oct; 590(20):3669-3680.
PMID: 27654641.
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PubMed Mentions:
2 Fields:
Translation:
HumansAnimalsCells
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Nucleoside Analogue Triphosphates Allosterically Regulate Human Ribonucleotide Reductase and Identify Chemical Determinants That Drive Substrate Specificity. Biochemistry. 2016 10 18; 55(41):5884-5896.
PMID: 27634056.
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PubMed Mentions:
3 Fields:
Translation:
HumansCells
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Analysis of the RNA Binding Specificity Landscape of C5 Protein Reveals Structure and Sequence Preferences that Direct RNase P Specificity. Cell Chem Biol. 2016 Oct 20; 23(10):1271-1281.
PMID: 27693057.
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PubMed Mentions:
8 Fields:
Translation:
Cells
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Determination of the Specificity Landscape for Ribonuclease P Processing of Precursor tRNA 5' Leader Sequences. ACS Chem Biol. 2016 08 19; 11(8):2285-92.
PMID: 27336323.
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PubMed Mentions:
4 Fields:
Translation:
Cells
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Optimization of high-throughput sequencing kinetics for determining enzymatic rate constants of thousands of RNA substrates. Anal Biochem. 2016 10 01; 510:1-10.
PMID: 27296633.
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PubMed Mentions:
2 Fields:
Translation:
Cells
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Inhibition of yeast ribonucleotide reductase by Sml1 depends on the allosteric state of the enzyme. FEBS Lett. 2016 06; 590(12):1704-12.
PMID: 27155231.
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PubMed Mentions:
1 Fields:
Translation:
AnimalsCells
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POT1-TPP1 Binding and Unfolding of Telomere DNA Discriminates against Structural Polymorphism. J Mol Biol. 2016 07 03; 428(13):2695-708.
PMID: 27173378.
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PubMed Mentions:
8 Fields:
Translation:
HumansCells
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Isotope effect analyses provide evidence for an altered transition state for RNA 2'-O-transphosphorylation catalyzed by Zn(2+). Chem Commun (Camb). 2016 Mar 25; 52(24):4462-5.
PMID: 26859380.
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PubMed Mentions:
2 Fields:
Translation:
Cells
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A Two-Metal-Ion-Mediated Conformational Switching Pathway for HDV Ribozyme Activation. ACS Catal. 2016; 6(3):1853-1869.
PMID: 27774349.
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PubMed Mentions:
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Identification of Non-nucleoside Human Ribonucleotide Reductase Modulators. J Med Chem. 2015 Dec 24; 58(24):9498-509.
PMID: 26488902.
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PubMed Mentions:
2 Fields:
Translation:
HumansCells
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Theme and Variation in tRNA 5' End Processing Enzymes: Comparative Analysis of Protein versus Ribonucleoprotein RNase P. J Mol Biol. 2016 Jan 16; 428(1):5-9.
PMID: 26655024.
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PubMed Mentions: Fields:
Translation:
Animals
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Specificity and nonspecificity in RNA-protein interactions. Nat Rev Mol Cell Biol. 2015 Sep; 16(9):533-44.
PMID: 26285679.
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PubMed Mentions:
60 Fields:
Translation:
HumansAnimalsCells
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Transition State Features in the Hepatitis Delta Virus Ribozyme Reaction Revealed by Atomic Perturbations. J Am Chem Soc. 2015 Jul 22; 137(28):8973-82.
PMID: 26125657.
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PubMed Mentions:
4 Fields:
Translation:
HumansCells
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Assessment of metal-assisted nucleophile activation in the hepatitis delta virus ribozyme from molecular simulation and 3D-RISM. RNA. 2015 Sep; 21(9):1566-77.
PMID: 26170378.
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PubMed Mentions:
5 Fields:
Translation:
Cells
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Exploring the Role of Residue 228 in Substrate and Inhibitor Recognition by VIM Metallo-ß-lactamases. Biochemistry. 2015 May 26; 54(20):3183-96.
PMID: 25915520.
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PubMed Mentions:
15 Fields:
Translation:
Cells
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Determination of hepatitis delta virus ribozyme N(-1) nucleobase and functional group specificity using internal competition kinetics. Anal Biochem. 2015 Aug 15; 483:12-20.
PMID: 25937290.
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PubMed Mentions:
2 Fields:
Translation:
Cells
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Integration of kinetic isotope effect analyses to elucidate ribonuclease mechanism. Biochim Biophys Acta. 2015 Nov; 1854(11):1801-8.
PMID: 25936517.
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PubMed Mentions:
3 Fields:
Translation:
Cells
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Effect of Zn2+ binding and enzyme active site on the transition state for RNA 2'-O-transphosphorylation interpreted through kinetic isotope effects. Biochim Biophys Acta. 2015 Nov; 1854(11):1795-800.
PMID: 25812974.
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PubMed Mentions:
5 Fields:
Translation:
Cells
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Interpretation of pH-activity profiles for acid-base catalysis from molecular simulations. Biochemistry. 2015 Feb 17; 54(6):1307-13.
PMID: 25615525.
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PubMed Mentions:
11 Fields:
Translation:
Cells
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Synthetic, potentiometric and spectroscopic studies of chelation between Fe(III) and 2,5-DHBA supports salicylate-mode of siderophore binding interactions. J Inorg Biochem. 2015 Apr; 145:1-10.
PMID: 25589161.
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PubMed Mentions:
2 Fields:
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Mechanistic insights into RNA transphosphorylation from kinetic isotope effects and linear free energy relationships of model reactions. Chemistry. 2014 Oct 27; 20(44):14336-43.
PMID: 25223953.
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PubMed Mentions:
12 Fields:
Translation:
Cells
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Determination of relative rate constants for in vitro RNA processing reactions by internal competition. Anal Biochem. 2014 Dec 15; 467:54-61.
PMID: 25173512.
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PubMed Mentions:
5 Fields:
Translation:
Cells
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Altered (transition) states: mechanisms of solution and enzyme catalyzed RNA 2'-O-transphosphorylation. Curr Opin Chem Biol. 2014 Aug; 21:96-102.
PMID: 25023967.
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PubMed Mentions:
13 Fields:
Translation:
Cells
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Control not at initiation? Bah, humbug! EMBO J. 2014 Jan 07; 33(1):3-4.
PMID: 24363142.
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PubMed Mentions:
4 Fields:
Translation:
Cells
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Hidden specificity in an apparently nonspecific RNA-binding protein. Nature. 2013 Oct 17; 502(7471):385-8.
PMID: 24056935.
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PubMed Mentions:
34 Fields:
Translation:
Cells
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Experimental and computational analysis of the transition state for ribonuclease A-catalyzed RNA 2'-O-transphosphorylation. Proc Natl Acad Sci U S A. 2013 Aug 06; 110(32):13002-7.
PMID: 23878223.
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PubMed Mentions:
24 Fields:
Translation:
Cells
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Coordinated interactions of multiple POT1-TPP1 proteins with telomere DNA. J Biol Chem. 2013 Jun 07; 288(23):16361-70.
PMID: 23616058.
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PubMed Mentions:
5 Fields:
Translation:
HumansCells
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Alternative substrate kinetics of Escherichia coli ribonuclease P: determination of relative rate constants by internal competition. J Biol Chem. 2013 Mar 22; 288(12):8342-54.
PMID: 23362254.
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PubMed Mentions:
8 Fields:
Translation:
Cells
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Molecular simulations of RNA 2'-O-transesterification reaction models in solution. J Phys Chem B. 2013 Jan 10; 117(1):94-103.
PMID: 23214417.
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PubMed Mentions:
11 Fields:
Translation:
Cells
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Early insights into the interactions of different ß-lactam antibiotics and ß-lactamase inhibitors against soluble forms of Acinetobacter baumannii PBP1a and Acinetobacter sp. PBP3. Antimicrob Agents Chemother. 2012 Nov; 56(11):5687-92.
PMID: 22908165.
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PubMed Mentions:
10 Fields:
Translation:
HumansCells
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Exploring the role of a conserved class A residue in the O-Loop of KPC-2 ß-lactamase: a mechanism for ceftazidime hydrolysis. J Biol Chem. 2012 Sep 14; 287(38):31783-93.
PMID: 22843686.
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PubMed Mentions:
23 Fields:
Translation:
Cells
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Characterization of the reaction path and transition states for RNA transphosphorylation models from theory and experiment. Angew Chem Int Ed Engl. 2012 Jan 16; 51(3):647-51.
PMID: 22076983.
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PubMed Mentions:
19 Fields:
Translation:
Cells
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Characterization of the Structure and Dynamics of the HDV Ribozyme at Different Stages Along the Reaction Path. J Phys Chem Lett. 2011 Oct 20; 2(20):2538-2543.
PMID: 22200005.
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PubMed Mentions:
16 Fields:
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Deconvolution of Raman spectroscopic signals for electrostatic, H-bonding, and inner-sphere interactions between ions and dimethyl phosphate in solution. J Inorg Biochem. 2011 Apr; 105(4):538-47.
Christian EL, Anderson VE, Harris ME. PMID: 21334281.
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PubMed Mentions: Fields:
Translation:
Cells
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Kinetic isotope effects for RNA cleavage by 2'-O- transphosphorylation: nucleophilic activation by specific base. J Am Chem Soc. 2010 Aug 25; 132(33):11613-21.
Harris ME, Dai Q, Gu H, Kellerman DL, Piccirilli JA, Anderson VE. PMID: 20669950.
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PubMed Mentions:
22 Fields:
Translation:
Cells
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A quantitative Raman spectroscopic signal for metal-phosphodiester interactions in solution. Biochemistry. 2010 Apr 06; 49(13):2869-79.
Christian EL, Anderson VE, Carey PR, Harris ME. PMID: 20180599.
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PubMed Mentions:
4 Fields:
Translation:
Cells
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Protein-precursor tRNA contact leads to sequence-specific recognition of 5' leaders by bacterial ribonuclease P. J Mol Biol. 2010 Feb 12; 396(1):195-208.
Koutmou KS, Zahler NH, Kurz JC, Campbell FE, Harris ME, Fierke CA. PMID: 19932118.
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PubMed Mentions:
22 Fields:
Translation:
Cells
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Binding of C5 protein to P RNA enhances the rate constant for catalysis for P RNA processing of pre-tRNAs lacking a consensus (+ 1)/C(+ 72) pair. J Mol Biol. 2010 Feb 05; 395(5):1019-37.
Sun L, Campbell FE, Yandek LE, Harris ME. PMID: 19917291.
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PubMed Mentions:
14 Fields:
Translation:
Cells
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RNA crosslinking methods. Methods Enzymol. 2009; 468:127-46.
Harris ME, Christian EL. PMID: 20946768.
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PubMed Mentions:
15 Fields:
Translation:
Cells
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Experimental analyses of the chemical dynamics of ribozyme catalysis. Curr Opin Chem Biol. 2008 Dec; 12(6):626-39.
Harris ME, Cassano AG. PMID: 18952193.
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PubMed Mentions:
7 Fields:
Translation:
Cells
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Evidence for a tyrosine-adenine stacking interaction and for a short-lived open intermediate subsequent to initial binding of Escherichia coli RNA polymerase to promoter DNA. J Mol Biol. 2009 Jan 16; 385(2):339-49.
Schroeder LA, Gries TJ, Saecker RM, Record MT, Harris ME, DeHaseth PL. PMID: 18976666.
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PubMed Mentions:
28 Fields:
Translation:
Cells
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Efficient synthesis of [2'-18O]uridine and its incorporation into oligonucleotides: a new tool for mechanistic study of nucleotidyl transfer reactions by isotope effect analysis. J Org Chem. 2008 Jan 04; 73(1):309-11.
Dai Q, Frederiksen JK, Anderson VE, Harris ME, Piccirilli JA. PMID: 18052189.
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PubMed Mentions:
11 Fields:
Translation:
Cells
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Evidence that binding of C5 protein to P RNA enhances ribozyme catalysis by influencing active site metal ion affinity. RNA. 2007 Sep; 13(9):1505-15.
Sun L, Harris ME. PMID: 17652407.
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PubMed Mentions:
22 Fields:
Translation:
Cells
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Inaccuracies in selected ion monitoring determination of isotope ratios obviated by profile acquisition: nucleotide 18O/16O measurements. Anal Biochem. 2007 Aug 01; 367(1):28-39.
Cassano AG, Wang B, Anderson DR, Previs S, Harris ME, Anderson VE. PMID: 17560863.
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PubMed Mentions:
9 Fields:
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Evidence that substrate-specific effects of C5 protein lead to uniformity in binding and catalysis by RNase P. EMBO J. 2006 Sep 06; 25(17):3998-4007.
Sun L, Campbell FE, Zahler NH, Harris ME. PMID: 16932744.
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PubMed Mentions:
37 Fields:
Translation:
Cells
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Activation of oxygen nucleophiles in enzyme catalysis. Chem Rev. 2006 Aug; 106(8):3236-51.
Anderson VE, Ruszczycky MW, Harris ME. PMID: 16895326.
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PubMed Mentions:
4 Fields:
Translation:
Cells
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The P4 metal binding site in RNase P RNA affects active site metal affinity through substrate positioning. RNA. 2006 Aug; 12(8):1463-7.
Christian EL, Smith KM, Perera N, Harris ME. PMID: 16822954.
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PubMed Mentions:
18 Fields:
Translation:
Cells
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RNA-dependent folding and stabilization of C5 protein during assembly of the E. coli RNase P holoenzyme. J Mol Biol. 2006 Jun 30; 360(1):190-203.
Guo X, Campbell FE, Sun L, Christian EL, Anderson VE, Harris ME. PMID: 16750220.
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PubMed Mentions:
12 Fields:
Translation:
Cells
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The pre-tRNA nucleotide base and 2'-hydroxyl at N(-1) contribute to fidelity in tRNA processing by RNase P. J Mol Biol. 2005 Feb 04; 345(5):969-85.
Zahler NH, Sun L, Christian EL, Harris ME. PMID: 15644198.
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PubMed Mentions:
20 Fields:
Translation:
Cells
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Analysis of solvent nucleophile isotope effects: evidence for concerted mechanisms and nucleophilic activation by metal coordination in nonenzymatic and ribozyme-catalyzed phosphodiester hydrolysis. Biochemistry. 2004 Aug 17; 43(32):10547-59.
Cassano AG, Anderson VE, Harris ME. PMID: 15301552.
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PubMed Mentions:
30 Fields:
Translation:
Cells
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Understanding the transition states of phosphodiester bond cleavage: insights from heavy atom isotope effects. Biopolymers. 2004 Jan; 73(1):110-29.
Cassano AG, Anderson VE, Harris ME. PMID: 14691944.
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PubMed Mentions:
14 Fields:
Translation:
Cells
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Recognition of the 5' leader of pre-tRNA substrates by the active site of ribonuclease P. RNA. 2003 Jun; 9(6):734-45.
Zahler NH, Christian EL, Harris ME. PMID: 12756331.
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PubMed Mentions:
32 Fields:
Translation:
Cells
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Recent insights into the structure and function of the ribonucleoprotein enzyme ribonuclease P. Curr Opin Struct Biol. 2003 Jun; 13(3):325-33.
Harris ME, Christian EL. PMID: 12831883.
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PubMed Mentions:
22 Fields:
Translation:
Cells
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Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA. J Mol Biol. 2002 Nov 29; 324(3):429-42.
Kaye NM, Zahler NH, Christian EL, Harris ME. PMID: 12445779.
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PubMed Mentions:
17 Fields:
Translation:
Cells
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Analysis of substrate recognition by the ribonucleoprotein endonuclease RNase P. Methods. 2002 Nov; 28(3):307-22.
Christian EL, Zahler NH, Kaye NM, Harris ME. PMID: 12431435.
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PubMed Mentions:
20 Fields:
Translation:
Cells
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Evidence for direct attack by hydroxide in phosphodiester hydrolysis. J Am Chem Soc. 2002 Sep 18; 124(37):10964-5.
Cassano AG, Anderson VE, Harris ME. PMID: 12224928.
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PubMed Mentions:
19 Fields:
Translation:
Cells
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Evidence for a polynuclear metal ion binding site in the catalytic domain of ribonuclease P RNA. EMBO J. 2002 May 01; 21(9):2253-62.
Christian EL, Kaye NM, Harris ME. PMID: 11980722.
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PubMed Mentions:
18 Fields:
Translation:
Cells
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NAIM and site-specific functional group modification analysis of RNase P RNA: magnesium dependent structure within the conserved P1-P4 multihelix junction contributes to catalysis. Biochemistry. 2002 Apr 09; 41(14):4533-45.
Kaye NM, Christian EL, Harris ME. PMID: 11926814.
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PubMed Mentions:
9 Fields:
Translation:
Cells
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Pre-steady-state and stopped-flow fluorescence analysis of Escherichia coli ribonuclease III: insights into mechanism and conformational changes associated with binding and catalysis. J Mol Biol. 2002 Mar 15; 317(1):21-40.
Campbell FE, Cassano AG, Anderson VE, Harris ME. PMID: 11916377.
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PubMed Mentions:
17 Fields:
Translation:
Cells
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Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme. RNA. 2000 Apr; 6(4):511-9.
Christian EL, Kaye NM, Harris ME. PMID: 10786842.
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PubMed Mentions:
25 Fields:
Translation:
Cells
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The track of the pre-tRNA 5' leader in the ribonuclease P ribozyme-substrate complex. Biochemistry. 1999 Sep 28; 38(39):12629-38.
Christian EL, Harris ME. PMID: 10504232.
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PubMed Mentions:
11 Fields:
Translation:
Cells
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Use of circular permutation and end modification to position photoaffinity probes for analysis of RNA structure. Methods. 1999 May; 18(1):51-9.
Harris ME, Christian EL. PMID: 10208816.
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PubMed Mentions:
6 Fields:
Translation:
Cells
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Identification of adenosine functional groups involved in substrate binding by the ribonuclease P ribozyme. Biochemistry. 1999 Feb 09; 38(6):1873-83.
Siew D, Zahler NH, Cassano AG, Strobel SA, Harris ME. PMID: 10026268.
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PubMed Mentions:
16 Fields:
Translation:
Cells
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Identification of individual nucleotides in the bacterial ribonuclease P ribozyme adjacent to the pre-tRNA cleavage site by short-range photo-cross-linking. Biochemistry. 1998 Dec 15; 37(50):17618-28.
Christian EL, McPheeters DS, Harris ME. PMID: 9860878.
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PubMed Mentions:
18 Fields:
Translation:
Cells
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Comparative photocross-linking analysis of the tertiary structures of Escherichia coli and Bacillus subtilis RNase P RNAs. EMBO J. 1998 Mar 02; 17(5):1515-25.
Chen JL, Nolan JM, Harris ME, Pace NR. PMID: 9482748.
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PubMed Mentions:
42 Fields:
Translation:
Cells
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Analysis of the tertiary structure of the ribonuclease P ribozyme-substrate complex by site-specific photoaffinity crosslinking. RNA. 1997 Jun; 3(6):561-76.
Harris ME, Kazantsev AV, Chen JL, Pace NR. PMID: 9174092.
View in:
PubMed Mentions:
31 Fields:
Translation:
Cells
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Identification of phosphates involved in catalysis by the ribozyme RNase P RNA. RNA. 1995 Apr; 1(2):210-8.
Harris ME, Pace NR. PMID: 7585250.
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PubMed Mentions:
38 Fields:
Translation:
Cells
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Analysis of the tertiary structure of bacterial RNase P RNA. Mol Biol Rep. 1995-1996; 22(2-3):115-23.
Harris ME, Pace NR. PMID: 8901497.
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PubMed Mentions:
3 Fields:
Translation:
Cells
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Rational design of self-cleaving pre-tRNA-ribonuclease P RNA conjugates. Biochemistry. 1994 Sep 06; 33(35):10800-8.
Frank DN, Harris ME, Pace NR. PMID: 8075082.
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PubMed Mentions:
27 Fields:
Translation:
Cells
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Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA. EMBO J. 1994 Sep 01; 13(17):3953-63.
Harris ME, Nolan JM, Malhotra A, Brown JW, Harvey SC, Pace NR. PMID: 7521297.
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PubMed Mentions:
55 Fields:
Translation:
Cells
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Molecular modeling to predict the structural and biological effects of mutations in a highly conserved histone mRNA loop sequence. J Biomol Struct Dyn. 1992 Jun; 9(6):1119-30.
Gabb HA, Harris ME, Pandey NB, Marzluff WF, Harvey SC. PMID: 1637506.
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PubMed Mentions:
3 Fields:
Translation:
Cells
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Kinetoplastid RNA editing: in vitro formation of cytochrome b gRNA-mRNA chimeras from synthetic substrate RNAs. Cell. 1992 Mar 20; 68(6):1091-9.
Harris ME, Hajduk SL. PMID: 1547505.
View in:
PubMed Mentions:
29 Fields:
Translation:
AnimalsCells