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Predicting the functional state of protein kinases using interpretable graph neural networks from sequence and structural data. Proteins. 2024 May; 92(5):623-636.
Ravichandran A, Araque JC, Lawson JW. PMID: 38083830.
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Translation:
HumansCells
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Relationship between the Relaxation of Ionic Liquid Structural Motifs and That of the Shear Viscosity. J Phys Chem B. 2021 06 17; 125(23):6264-6271.
Amith WD, Araque JC, Margulis CJ. PMID: 34097825; PMCID: PMC8279556.
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5 Fields:
Translation:
Cells
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A Pictorial View of Viscosity in Ionic Liquids and the Link to Nanostructural Heterogeneity. J Phys Chem Lett. 2020 Mar 19; 11(6):2062-2066.
Amith WD, Araque JC, Margulis CJ. PMID: 32079397.
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15 Fields:
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In an ionic liquid, high local friction is determined by the proximity to the charge network. J Chem Phys. 2018 Oct 14; 149(14):144503.
Araque JC, Margulis CJ. PMID: 30316258.
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6 Fields:
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Communication: Stiff and soft nano-environments and the "Octopus Effect" are the crux of ionic liquid structural and dynamical heterogeneity. J Chem Phys. 2017 Aug 14; 147(6):061102.
Daly RP, Araque JC, Margulis CJ. PMID: 28810794.
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8 Fields:
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Rotational Dynamics in Ionic Liquids from NMR Relaxation Experiments and Simulations: Benzene and 1-Ethyl-3-Methylimidazolium. J Phys Chem B. 2016 09 08; 120(35):9450-67.
Rumble CA, Kaintz A, Yadav SK, Conway B, Araque JC, Baker GA, Margulis C, Maroncelli M. PMID: 27509215.
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6 Fields:
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A link between structure, diffusion and rotations of hydrogen bonding tracers in ionic liquids. J Chem Phys. 2016 May 28; 144(20):204504.
Araque JC, Daly RP, Margulis CJ. PMID: 27250313.
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7 Fields:
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Communication: Nanoscale structure of tetradecyltrihexylphosphonium based ionic liquids. J Chem Phys. 2016 Mar 28; 144(12):121102.
Hettige JJ, Araque JC, Kashyap HK, Margulis CJ. PMID: 27036419.
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7 Fields:
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Lattice model of oligonucleotide hybridization in solution. II. Specificity and cooperativity. J Chem Phys. 2016 Mar 28; 144(12):125101.
Araque JC, Robert MA. PMID: 27036478.
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3 Fields:
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Ionic liquids-Conventional solvent mixtures, structurally different but dynamically similar. J Chem Phys. 2015 Oct 07; 143(13):134505.
Araque JC, Hettige JJ, Margulis CJ. PMID: 26450321.
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PubMed Mentions:
7 Fields:
Translation:
Cells
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The Role of Balloon Aortic Valvuloplasty in Patients With Aortic Valve Stenosis and Society of Thoracic Surgeons Risk of 15% or Higher. Ann Thorac Surg. 2016 Feb; 101(2):592-7; discussion 597-8.
Araque JC, Greason KL, Suri RM, Holmes DR, Rihal CS, Reeder GS, Bresnahan JF, Nkomo VT, Mathew V. PMID: 26410157.
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PubMed Mentions:
4 Fields:
Translation:
Humans
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Effects of Fabrication on Early Patency and Regeneration of Small Intestinal Submucosa Vascular Grafts. ASAIO J. 2015 Sep-Oct; 61(5):596-604.
Sánchez-Palencia DM, Navarro J, Araque JC, Umaña JB, Guerrero AF, Quijano LM, López RD, Sandoval NF, Briceno JC. PMID: 26098175.
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PubMed Mentions:
3 Fields:
Translation:
Animals
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Modern Room Temperature Ionic Liquids, a Simple Guide to Understanding Their Structure and How It May Relate to Dynamics. J Phys Chem B. 2015 Oct 08; 119(40):12727-40.
Araque JC, Hettige JJ, Margulis CJ. PMID: 26244375.
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28 Fields:
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How Is Diffusion of Neutral and Charged Tracers Related to the Structure and Dynamics of a Room-Temperature Ionic Liquid? Large Deviations from Stokes-Einstein Behavior Explained. J Phys Chem B. 2015 Jun 11; 119(23):7015-29.
Araque JC, Yadav SK, Shadeck M, Maroncelli M, Margulis CJ. PMID: 25811753.
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12 Fields:
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On-pump coronary artery bypass graft operation: Is one crossclamp application better than two? J Thorac Cardiovasc Surg. 2015 Jul; 150(1):145-9.
Araque JC, Greason KL, Li Z, Heins CN, Stulak JM, Daly RC, Joyce LD, Suri RM, Locker C, Schaff HV. PMID: 25963439.
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PubMed Mentions:
5 Fields:
Translation:
Humans
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Bicontinuity and multiple length scale ordering in triphilic hydrogen-bonding ionic liquids. J Phys Chem B. 2014 Nov 06; 118(44):12706-16.
Hettige JJ, Araque JC, Margulis CJ. PMID: 25157443.
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10 Fields:
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Molecular dynamics of equilibrium and pressure-driven transport properties of water through LTA-type zeolites. Langmuir. 2013 Oct 08; 29(40):12389-99.
Turgman-Cohen S, Araque JC, Hoek EM, Escobedo FA. PMID: 24024745.
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7 Fields:
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A theoretical and simulation study of the self-assembly of a binary blend of diblock copolymers. J Chem Phys. 2012 Jun 21; 136(23):234905.
Padmanabhan P, Martinez-Veracoechea FJ, Araque JC, Escobedo FA. PMID: 22779617.
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1 Fields:
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Lattice model of oligonucleotide hybridization in solution. I. Model and thermodynamics. J Chem Phys. 2011 Apr 28; 134(16):165103.
Araque JC, Panagiotopoulos AZ, Robert MA. PMID: 21528982.
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PubMed Mentions:
4 Fields:
Translation:
Cells
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Transition path sampling and forward flux sampling. Applications to biological systems. J Phys Condens Matter. 2009 Aug 19; 21(33):333101.
Escobedo FA, Borrero EE, Araque JC. PMID: 21828593.
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PubMed Mentions:
14 Fields: