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Crystal Nicole Marconett, PhD

Title(s)Assistant Professor of Research Surgery
Address6418A Norris Topping Tower
Health Sciences Campus
Los Angeles CA 90033
Phone+1 323 865 0649
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    Collapse Biography 
    Collapse Education and Training
    UC Berkeley, Berkeley CAPhD12/2009Molecular and Cell Biology
    UC Santa Cruz, Santa Cruz, CaBS3/2005Molecular, Cell and Developmental Biology
    Collapse Awards and Honors
    American Journal of Respiratory Cell Biology2017  - 2017Featured Researcher 2017
    STOP Cancer2017  - 2018Howard and Andree Shore Seed Grant
    American Cancer Society2010  - 2013ACS/Canary Foundation Postdoctoral Fellow
    California Breast Cancer Research Program2007  - 2009CBCRP Dissertation Fellowship
    UC Berkeley2005  - 2007Chancellors Predoctoral Award

    Collapse Overview 
    Collapse Overview
    Our lab focuses on lung cancer research. We utilize bioinformatic and computational science alongside in vitro experimentation to understand fundamental mechanisms of lung adenocarcinoma disease progression. As an associate member of the Norris Cancer Center and junior faculty member in the Departments of Surgery, and Biochemistry/Molecular Medicine, my labs focus is on understanding the contribution long non-coding RNAs play in the development of lung cancers. We have characterized a novel role for lncRNAs in mediation of the DNA damage response, and are keen on translating these basic mechanistic understandings into actionable therapeutic options.

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    Collapse Featured Publications
    Collapse In The News

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence. PLoS One. 2020; 15(12):e0243791. PMID: 33320871.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    2. Integrated Single-Cell RNA-Sequencing Analysis of Aquaporin 5-Expressing Mouse Lung Epithelial Cells Identifies GPRC5A as a Novel Validated Type I Cell Surface Marker. Cells. 2020 Nov 11; 9(11). Horie M, Castaldi A, Sunohara M, Wang H, Ji Y, Liu Y, Li F, Wilkinson TA, Hung L, Shen H, Kage H, Offringa IA, Marconett CN, Flodby P, Zhou B, Borok Z. PMID: 33187367.
      View in: PubMed   Mentions:    Fields:    
    3. TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma. PLoS Genet. 2020 09; 16(9):e1009023. Mullen DJ, Yan C, Kang DS, Zhou B, Borok Z, Marconett CN, Farnham PJ, Offringa IA, Rhie SK. PMID: 32925947.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    4. Genome-wide integration of microRNA and transcriptomic profiles of differentiating human alveolar epithelial cells. Am J Physiol Lung Cell Mol Physiol. 2020 07 01; 319(1):L173-L184. Castaldi A, Horie M, Rieger ME, Dubourd M, Sunohara M, Pandit K, Zhou B, Offringa IA, Marconett CN, Borok Z. PMID: 32432919.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    5. Tuberculosis infection and lung adenocarcinoma: Mendelian randomization and pathway analysis of genome-wide association study data from never-smoking Asian women. Genomics. 2020 03; 112(2):1223-1232. Wong JYY, Zhang H, Hsiung CA, Shiraishi K, Yu K, Matsuo K, Wong MP, Hong YC, Wang J, Seow WJ, Wang Z, Song M, Kim HN, Chang IS, Chatterjee N, Hu W, Wu C, Mitsudomi T, Zheng W, Kim JH, Seow A, Caporaso NE, Shin MH, Chung LP, An SJ, Wang P, Yang Y, Zheng H, Yatabe Y, Zhang XC, Kim YT, Cai Q, Yin Z, Kim YC, Bassig BA, Chang J, Ho JCM, Ji BT, Daigo Y, Ito H, Momozawa Y, Ashikawa K, Kamatani Y, Honda T, Hosgood HD, Sakamoto H, Kunitoh H, Tsuta K, Watanabe SI, Kubo M, Miyagi Y, Nakayama H, Matsumoto S, Tsuboi M, Goto K, Shi J, Song L, Hua X, Takahashi A, Goto A, Minamiya Y, Shimizu K, Tanaka K, Wei F, Matsuda F, Su J, Kim YH, Oh IJ, Song F, Su WC, Chen YM, Chang GC, Chen KY, Huang MS, Chien LH, Xiang YB, Park JY, Kweon SS, Chen CJ, Lee KM, Blechter B, Li H, Gao YT, Qian B, Lu D, Liu J, Jeon HS, Hsiao CF, Sung JS, Tsai YH, Jung YJ, Guo H, Hu Z, Wang WC, Chung CC, Burdett L, Yeager M, Hutchinson A, Berndt SI, Wu W, Pang H, Li Y, Choi JE, Park KH, Sung SW, Liu L, Kang CH, Zhu M, Chen CH, Yang TY, Xu J, Guan P, Tan W, Wang CL, Hsin M, Sit KY, Ho J, Chen Y, Choi YY, Hung JY, Kim JS, Yoon HI, Lin CC, Park IK, Xu P, Wang Y, He Q, Perng RP, Chen CY, Vermeulen R, Wu J, Lim WY, Chen KC, Li YJ, Li J, Chen H, Yu CJ, Jin L, Chen TY, Jiang SS, Liu J, Yamaji T, Hicks B, Wyatt K, Li SA, Dai J, Ma H, Jin G, Song B, Wang Z, Cheng S, Li X, Ren Y, Cui P, Iwasaki M, Shimazu T, Tsugane S, Zhu J, Chen Y, Yang K, Jiang G, Fei K, Wu G, Lin HC, Chen HL, Fang YH, Tsai FY, Hsieh WS, Yu J, Stevens VL, Laird-Offringa IA, Marconett CN, Rieswijk L, Chao A, Yang PC, Shu XO, Wu T, Wu YL, Lin D, Chen K, Zhou B, Huang YC, Kohno T, Shen H, Chanock SJ, Rothman N, Lan Q. PMID: 31306748.
      View in: PubMed   Mentions: 2     Fields:    
    6. LINC00261 Is an Epigenetically Regulated Tumor Suppressor Essential for Activation of the DNA Damage Response. Cancer Res. 2019 Jun 15; 79(12):3050-3062. Shahabi S, Kumaran V, Castillo J, Cong Z, Nandagopal G, Mullen DJ, Alvarado A, Correa MR, Saizan A, Goel R, Bhat A, Lynch SK, Zhou B, Borok Z, Marconett CN. PMID: 30796052.
      View in: PubMed   Mentions: 22     Fields:    Translation:Humans
    7. CLDN18.1 attenuates malignancy and related signaling pathways of lung adenocarcinoma in vivo and in vitro. Int J Cancer. 2018 12 15; 143(12):3169-3180. Luo J, Chimge NO, Zhou B, Flodby P, Castaldi A, Firth AL, Liu Y, Wang H, Yang C, Marconett CN, Crandall ED, Offringa IA, Frenkel B, Borok Z. PMID: 30325015.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    8. Positional integration of lung adenocarcinoma susceptibility loci with primary human alveolar epithelial cell epigenomes. Epigenomics. 2018 09; 10(9):1167-1187. Yang C, Stueve TR, Yan C, Rhie SK, Mullen DJ, Luo J, Zhou B, Borok Z, Marconett CN, Offringa IA. PMID: 30212242.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    9. Claudin-18-mediated YAP activity regulates lung stem and progenitor cell homeostasis and tumorigenesis. J Clin Invest. 2018 03 01; 128(3):970-984. Zhou B, Flodby P, Luo J, Castillo DR, Liu Y, Yu FX, McConnell A, Varghese B, Li G, Chimge NO, Sunohara M, Koss MN, Elatre W, Conti P, Liebler JM, Yang C, Marconett CN, Laird-Offringa IA, Minoo P, Guan K, Stripp BR, Crandall ED, Borok Z. PMID: 29400695.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    10. Epigenome-wide analysis of DNA methylation in lung tissue shows concordance with blood studies and identifies tobacco smoke-inducible enhancers. Hum Mol Genet. 2017 08 01; 26(15):3014-3027. Stueve TR, Li WQ, Shi J, Marconett CN, Zhang T, Yang C, Mullen D, Yan C, Wheeler W, Hua X, Zhou B, Borok Z, Caporaso NE, Pesatori AC, Duan J, Laird-Offringa IA, Landi MT. PMID: 28854564.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    11. Intersecting transcriptomic profiling technologies and long non-coding RNA function in lung adenocarcinoma: discovery, mechanisms, and therapeutic applications. Oncotarget. 2017 Oct 06; 8(46):81538-81557. Castillo J, Stueve TR, Marconett CN. PMID: 29113413.
      View in: PubMed   Mentions: 5     Fields:    
    12. Cross-Species Transcriptome Profiling Identifies New Alveolar Epithelial Type I Cell-Specific Genes. Am J Respir Cell Mol Biol. 2017 03; 56(3):310-321. PMID: 27749084.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    13. Association between GWAS-identified lung adenocarcinoma susceptibility loci and EGFR mutations in never-smoking Asian women, and comparison with findings from Western populations. Hum Mol Genet. 2017 01 15; 26(2):454-465. PMID: 28025329.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    14. Somatic Genomics and Clinical Features of Lung Adenocarcinoma: A Retrospective Study. PLoS Med. 2016 Dec; 13(12):e1002162. PMID: 27923066.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCells
    15. Pleiotropic Analysis of Lung Cancer and Blood Triglycerides. J Natl Cancer Inst. 2016 12; 108(12). PMID: 27565901.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    16. The 78-kD Glucose-Regulated Protein Regulates Endoplasmic Reticulum Homeostasis and Distal Epithelial Cell Survival during Lung Development. Am J Respir Cell Mol Biol. 2016 07; 55(1):135-49. PMID: 26816051.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    17. The importance of detailed epigenomic profiling of different cell types within organs. Epigenomics. 2016 06; 8(6):817-29. PMID: 27305639.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    18. Combinations of differentiation markers distinguish subpopulations of alveolar epithelial cells in adult lung. . 2016 Jan 15; 310(2):L114-20. PMID: 26545903.
      View in: PubMed   Mentions:
    19. Transcriptomic Profiling of Primary Alveolar Epithelial Cell Differentiation in Human and Rat. Genom Data. 2014 Dec 01; 2:105-109. PMID: 25343132.
      View in: PubMed   Mentions:
    20. Claudin 4 knockout mice: normal physiological phenotype with increased susceptibility to lung injury. . 2014 Oct 01; 307(7):L524-36. PMID: 25106430.
      View in: PubMed   Mentions:
    21. Knockout mice reveal key roles for claudin 18 in alveolar barrier properties and fluid homeostasis. Am J Respir Cell Mol Biol. 2014 Aug; 51(2):210-22. PMID: 24588076.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimalsCells
    22. Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue. Nat Commun. 2014 Feb 27; 5:3365. PMID: 24572595.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansCells
    23. CDKN2A/p16 inactivation mechanisms and their relationship to smoke exposure and molecular features in non-small-cell lung cancer. J Thorac Oncol. 2013 Nov; 8(11):1378-88. PMID: 24077454.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    24. Integrated transcriptomic and epigenomic analysis of primary human lung epithelial cell differentiation. PLoS Genet. 2013 Jun; 9(6):e1003513. PMID: 23818859.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    25. Indole-3-carbinol disrupts estrogen receptor-alpha dependent expression of insulin-like growth factor-1 receptor and insulin receptor substrate-1 and proliferation of human breast cancer cells. Mol Cell Endocrinol. 2012 Nov 05; 363(1-2):74-84. PMID: 22835548.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    26. Indole-3-carbinol downregulation of telomerase gene expression requires the inhibition of estrogen receptor-alpha and Sp1 transcription factor interactions within the hTERT promoter and mediates the G1 cell cycle arrest of human breast cancer cells. Carcinogenesis. 2011 Sep; 32(9):1315-23. PMID: 21693539.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    27. BZL101, a phytochemical extract from the Scutellaria barbata plant, disrupts proliferation of human breast and prostate cancer cells through distinct mechanisms dependent on the cancer cell phenotype. . 2010 Aug 15; 10(4):397-405. Marconett CN, Morgenstern TJ, San Roman AK, Sundar SN, Singhal AK, Firestone GL. PMID: 20574166.
      View in: PubMed   Mentions:
    28. 1-Benzyl-indole-3-carbinol is a novel indole-3-carbinol derivative with significantly enhanced potency of anti-proliferative and anti-estrogenic properties in human breast cancer cells. Chem Biol Interact. 2010 Aug 05; 186(3):255-66. Nguyen HH, Lavrenov SN, Sundar SN, Nguyen DH, Tseng M, Marconett CN, Kung J, Staub RE, Preobrazhenskaya MN, Bjeldanes LF, Firestone GL. PMID: 20570586.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    29. Indole-3-carbinol triggers aryl hydrocarbon receptor-dependent estrogen receptor (ER)alpha protein degradation in breast cancer cells disrupting an ERalpha-GATA3 transcriptional cross-regulatory loop. Mol Biol Cell. 2010 Apr 01; 21(7):1166-77. Marconett CN, Sundar SN, Poindexter KM, Stueve TR, Bjeldanes LF, Firestone GL. PMID: 20130088.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    30. Artemisinin selectively decreases functional levels of estrogen receptor-alpha and ablates estrogen-induced proliferation in human breast cancer cells. Carcinogenesis. 2008 Dec; 29(12):2252-8. Sundar SN, Marconett CN, Doan VB, Willoughby JA, Firestone GL. PMID: 18784357.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
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