Jennifer Ann Cotter, MD

Title(s)Associate Professor of Clinical Pathology
SchoolKeck School of Medicine of Usc
vCardDownload vCard

    Collapse Biography 
    Collapse Education and Training
    Keck School of Medicine, Los Angeles, CAM.D.05/2011
    University of California San Francisco, San Francisco, CA06/2015Anatomic Pathology, Neuropathology

    Collapse Overview 

    Collapse ORNG Applications 
    Collapse Required Scholarly Project Mentor

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Developmental basis of SHH medulloblastoma heterogeneity. Nat Commun. 2024 Jan 08; 15(1):270. Gold MP, Ong W, Masteller AM, Ghasemi DR, Galindo JA, Park NR, Huynh NC, Donde A, Pister V, Saurez RA, Vladoiu MC, Hwang GH, Eisemann T, Donovan LK, Walker AD, Benetatos J, Dufour C, Garzia L, Segal RA, Wechsler-Reya RJ, Mesirov JP, Korshunov A, Pajtler KW, Pomeroy SL, Ayrault O, Davidson SM, Cotter JA, Taylor MD, Fraenkel E. PMID: 38191555; PMCID: PMC10774283.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    2. Expansion of endogenous T cells in CSF of pediatric CNS tumor patients undergoing locoregional delivery of IL13R〿2-targeting CAR T cells: an interim analysis. Res Sq. 2023 Oct 23. Wang L, Oill AT, Blanchard M, Wu M, Hibbard J, Sepulveda S, Peter L, Kilpatrick J, Munoz M, Stiller T, Shulkin N, Wagner J, Dolatabadi A, Nisis M, Shepphird J, Sanchez G, Lingaraju C, Manchanda M, Natri H, Kouakanou L, Sun G, Oliver-Cervantes C, Georges J, Aftabizadeh M, Forman S, Priceman S, Ressler J, Arvanitis L, Cotter J, D'Apuzzo M, Tamrazi B, Badie B, Davidson T, Banovich N, Brown C. PMID: 37961215; PMCID: PMC10635314.
      View in: PubMed   Mentions:
    3. Low-pass whole-genome and targeted sequencing of cell-free DNA from cerebrospinal fluid in pediatric patients with central nervous system tumors. Neurooncol Adv. 2023 Jan-Dec; 5(1):vdad077. O'Halloran K, Yellapantula V, Christodoulou E, Ostrow D, Bootwalla M, Ji J, Cotter J, Chapman N, Chu J, Margol A, Krieger MD, Chiarelli PA, Gai X, Biegel JA. PMID: 37461402; PMCID: PMC10349915.
      View in: PubMed   Mentions: 2  
    4. Elevated liver enzymes: unusual presentation of anti-MDA5 antibody-associated juvenile dermatomyositis. Clin Exp Rheumatol. 2024 Feb; 42(2):456-457. Yi BY, Marrs J, Schenker R, Suddock J, Cotter JA, Cidon M. PMID: 37279157.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    5. Addendum: Sustained response of three pediatric BRAFV600E mutated high-grade gliomas to combined BRAF and MEK inhibitor therapy. Oncotarget. 2023 May 19; 14:502. Toll SA, Tran HN, Cotter J, Judkins AR, Tamrazi B, Biegel JA, Dhall G, Robison NJ, Waters K, Patel P, Cooper R, Margol AS. PMID: 37204254; PMCID: PMC10197959.
      View in: PubMed   Mentions:    Fields:    
    6. Hyaline protoplasmic astrocytopathy in epilepsy. Neuropathology. 2023 Dec; 43(6):441-456. Magaki S, Haeri M, Szymanski LJ, Chen Z, Diaz R, Williams CK, Chang JW, Ao Y, Newell KL, Khanlou N, Yong WH, Fallah A, Salamon N, Daniel T, Cotter J, Hawes D, Sofroniew M, Vinters HV. PMID: 37198977.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    7. 3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma. Nat Commun. 2023 04 21; 14(1):2300. Okonechnikov K, Camgöz A, Chapman O, Wani S, Park DE, Hübner JM, Chakraborty A, Pagadala M, Bump R, Chandran S, Kraft K, Acuna-Hidalgo R, Reid D, Sikkink K, Mauermann M, Juarez EF, Jenseit A, Robinson JT, Pajtler KW, Milde T, Jäger N, Fiesel P, Morgan L, Sridhar S, Coufal NG, Levy M, Malicki D, Hobbs C, Kingsmore S, Nahas S, Snuderl M, Crawford J, Wechsler-Reya RJ, Davidson TB, Cotter J, Michaiel G, Fleischhack G, Mundlos S, Schmitt A, Carter H, Michealraj KA, Kumar SA, Taylor MD, Rich J, Buchholz F, Mesirov JP, Pfister SM, Ay F, Dixon JR, Kool M, Chavez L. PMID: 37085539; PMCID: PMC10121654.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    8. Combined low-pass whole genome and targeted sequencing in liquid biopsies for pediatric solid tumors. NPJ Precis Oncol. 2023 Feb 20; 7(1):21. Christodoulou E, Yellapantula V, O'Halloran K, Xu L, Berry JL, Cotter JA, Zdanowicz A, Mascarenhas L, Amatruda JF, Ostrow D, Bootwalla M, Gai X, Navid F, Biegel JA. PMID: 36805676; PMCID: PMC9941464.
      View in: PubMed   Mentions: 3  
    9. Multi-institutional study of the frequency, genomic landscape, and outcome of IDH-mutant glioma in pediatrics. Neuro Oncol. 2023 01 05; 25(1):199-210. Yeo KK, Alexandrescu S, Cotter JA, Vogelzang J, Bhave V, Li MM, Ji J, Benhamida JK, Rosenblum MK, Bale TA, Bouvier N, Kaneva K, Rosenberg T, Lim-Fat MJ, Ghosh H, Martinez M, Aguilera D, Smith A, Goldman S, Diamond EL, Gavrilovic I, MacDonald TJ, Wood MD, Nazemi KJ, Truong A, Cluster A, Ligon KL, Cole K, Bi WL, Margol AS, Karajannis MA, Wright KD. PMID: 35604410; PMCID: PMC9825351.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    10. The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location. Nat Genet. 2022 12; 54(12):1881-1894. Liu I, Jiang L, Samuelsson ER, Marco Salas S, Beck A, Hack OA, Jeong D, Shaw ML, Englinger B, LaBelle J, Mire HM, Madlener S, Mayr L, Quezada MA, Trissal M, Panditharatna E, Ernst KJ, Vogelzang J, Gatesman TA, Halbert ME, Palova H, Pokorna P, Sterba J, Slaby O, Geyeregger R, Diaz A, Findlay IJ, Dun MD, Resnick A, Suvà ML, Jones DTW, Agnihotri S, Svedlund J, Koschmann C, Haberler C, Czech T, Slavc I, Cotter JA, Ligon KL, Alexandrescu S, Yung WKA, Arrillaga-Romany I, Gojo J, Monje M, Nilsson M, Filbin MG. PMID: 36471067; PMCID: PMC9729116.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    11. Spectrum of paired-like homeobox 2b immunoexpression in pediatric brain tumors with embryonal morphology. Pathol Int. 2022 Aug; 72(8):402-410. Alturkustani M, Walker AD, Tran I, Snuderl M, Cotter JA. PMID: 35763016; PMCID: PMC9544136.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    12. Nests of dividing neuroblasts sustain interneuron production for the developing human brain. Science. 2022 01 28; 375(6579):eabk2346. Paredes MF, Mora C, Flores-Ramirez Q, Cebrian-Silla A, Del Dosso A, Larimer P, Chen J, Kang G, Gonzalez Granero S, Garcia E, Chu J, Delgado R, Cotter JA, Tang V, Spatazza J, Obernier K, Ferrer Lozano J, Vento M, Scott J, Studholme C, Nowakowski TJ, Kriegstein AR, Oldham MC, Hasenstaub A, Garcia-Verdugo JM, Alvarez-Buylla A, Huang EJ. PMID: 35084970; PMCID: PMC8887556.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    13. Medulloblastoma: WHO 2021 and Beyond. Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):23-33. Cotter JA, Hawkins C. PMID: 35168417.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    14. Intraoperative Diagnosis for Pediatric Brain Tumors. Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):10-22. Cotter JA, Szymanski LJ, Pawel BR, Judkins AR. PMID: 35168418.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    15. Evaluation and Diagnosis of Central Nervous System Embryonal Tumors (Non-Medulloblastoma). Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):34-45. Cotter JA, Judkins AR. PMID: 35168419.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    16. Autopsy findings of previously described case of diffuse intrinsic pontine glioma-like tumor with EZHIP expression and molecular features of PFA ependymoma. Acta Neuropathol Commun. 2021 06 23; 9(1):113. Alturkustani M, Cotter JA, Mahabir R, Hawes D, Koschmann C, Venneti S, Judkins AR, Szymanski LJ. PMID: 34162441; PMCID: PMC8220665.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    17. The spectrum of mitochondrial DNA (mtDNA) mutations in pediatric CNS tumors. Neurooncol Adv. 2021 Jan-Dec; 3(1):vdab074. Kaneva K, O'Halloran K, Triska P, Liu X, Merkurjev D, Bootwalla M, Ryutov A, Cotter JA, Ostrow D, Biegel JA, Gai X. PMID: 34337412; PMCID: PMC8320689.
      View in: PubMed   Mentions: 3  
    18. IDH-mutant brainstem gliomas in adolescent and young adult patients: Report of three cases and review of the literature. Brain Pathol. 2021 07; 31(4):e12959. Chang EK, Smith-Cohn MA, Tamrazi B, Ji J, Krieger M, Holdhoff M, Eberhart CG, Margol AS, Cotter JA. PMID: 33960568; PMCID: PMC8412065.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    19. Histopathological patterns in atypical teratoid/rhabdoid tumors are related to molecular subgroup. Brain Pathol. 2021 09; 31(5):e12967. Zin F, Cotter JA, Haberler C, Dottermusch M, Neumann J, Schüller U, Schweizer L, Thomas C, Nemes K, Johann PD, Kool M, Frühwald MC, Paulus W, Judkins A, Hasselblatt M. PMID: 33938067; PMCID: PMC8412123.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    20. A Practical Approach to the Evaluation and Diagnosis of Pediatric CNS Tumors. Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):6-9. Cotter JA, Viaene AN, Santi M, Hawkins C, Judkins AR. PMID: 33872110.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    21. Clinical utility of comprehensive genomic profiling in central nervous system tumors of children and young adults. Neurooncol Adv. 2021 Jan-Dec; 3(1):vdab037. Ji J, Kaneva K, Hiemenz MC, Dhall G, Davidson TB, Erdreich-Epstein A, Hawes D, Hurth K, Margol AS, Mathew AJ, Robison NJ, Schmidt RJ, Tran HN, Judkins AR, Cotter JA, Biegel JA. PMID: 33948563; PMCID: PMC8080244.
      View in: PubMed   Mentions: 4  
    22. Custom Pediatric Oncology Next-Generation Sequencing Panel Identifies Somatic Mosaicism in Archival Tissue and Enhances Targeted Clinical Care. Pediatr Neurol. 2021 01; 114:55-59. Quindipan C, Cotter JA, Ji J, Mitchell WG, Moke DJ, Navid F, Thomas SM, VanHirtum-Das M, Wang L, Saitta SC, Biegel JA, Hiemenz MC. PMID: 33221597.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    23. Primary diffuse leptomeningeal glioneuronal tumors of the central nervous system: Report of three cases and review of literature. Pediatr Hematol Oncol. 2020 Apr; 37(3):248-258. Abongwa C, Cotter J, Tamrazi B, Dhall G, Davidson T, Margol A. PMID: 31951480.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    24. Novel TRIM24-MET Fusion in a Neonatal Brain Tumor. JCO Precis Oncol. 2019 Dec; 3:1-6. Hiemenz MC, Skrypek MM, Cotter JA, Biegel JA. PMID: 35100688.
      View in: PubMed   Mentions: 4     Fields:    
    25. Expanding the spectrum of dicer1-associated sarcomas. Mod Pathol. 2020 01; 33(1):164-174. Warren M, Hiemenz MC, Schmidt R, Shows J, Cotter J, Toll S, Parham DM, Biegel JA, Mascarenhas L, Shah R. PMID: 31537896; PMCID: PMC7528621.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    26. Case 1: An 11-year-old Girl with Depression and Electrolyte Disturbance. Pediatr Rev. 2019 Aug; 40(8):421-424. Assaf RR, Levine M, Cheung C, Tamrazi B, Cotter JA, Bryant M, Kiehna EN. PMID: 31371635.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    27. An update on the central nervous system manifestations of tuberous sclerosis complex. Acta Neuropathol. 2020 04; 139(4):613-624. Cotter JA. PMID: 30976976.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    28. Sustained response of three pediatric BRAFV600E mutated high-grade gliomas to combined BRAF and MEK inhibitor therapy. Oncotarget. 2019 Jan 11; 10(4):551-557. Toll SA, Tran HN, Cotter J, Judkins AR, Tamrazi B, Biegel JA, Dhall G, Robison NJ, Waters K, Patel P, Cooper R, Margol AS. PMID: 30728904; PMCID: PMC6355184.
      View in: PubMed   Mentions: 25     Fields:    
    29. Fitting the epigenome into the picture: methylation classification for paediatric brain tumours. Neuropathol Appl Neurobiol. 2018 10; 44(6):543-547. Cotter JA, Judkins AR. PMID: 29679371.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    30. Transmission of a TP53 germline mutation from unaffected male carrier associated with pediatric glioblastoma in his child and gestational choriocarcinoma in his female partner. Cold Spring Harb Mol Case Stud. 2018 04; 4(2). Cotter JA, Szymanski L, Karimov C, Boghossian L, Margol A, Dhall G, Tamrazi B, Varaprasathan GI, Parham DM, Judkins AR, Biegel JA. PMID: 29581140; PMCID: PMC5880265.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    31. Palliative Care Options for a Young Adult Patient with a Diffuse Intrinsic Pontine Glioma. Cureus. 2017 Aug 18; 9(8):e1580. Sison J, Tran H, Margol A, Tiwari N, Garcia KM, Cotter J, Kiehna E, Olch AJ, Wong K. PMID: 29057192; PMCID: PMC5647135.
      View in: PubMed   Mentions: 3  
    32. Novel GOPC(FIG)-ROS1 fusion in a pediatric high-grade glioma survivor. J Neurosurg Pediatr. 2017 Jul; 20(1):51-55. Kiehna EN, Arnush MR, Tamrazi B, Cotter JA, Hawes D, Robison NJ, Fong CY, Estrine DB, Han JH, Biegel JA. PMID: 28387643.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    33. Extensive migration of young neurons into the infant human frontal lobe. Science. 2016 Oct 07; 354(6308). Paredes MF, James D, Gil-Perotin S, Kim H, Cotter JA, Ng C, Sandoval K, Rowitch DH, Xu D, McQuillen PS, Garcia-Verdugo JM, Huang EJ, Alvarez-Buylla A. PMID: 27846470; PMCID: PMC5436574.
      View in: PubMed   Mentions: 139     Fields:    Translation:HumansCells
    34. Clinico-pathological correlation in adenylate kinase 5 autoimmune limbic encephalitis. J Neuroimmunol. 2015 Oct 15; 287:31-5. Ng AS, Kramer J, Centurion A, Dalmau J, Huang E, Cotter JA, Geschwind MD. PMID: 26439959; PMCID: PMC4879958.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    35. Primary glioblastoma of the trigeminal nerve root entry zone: case report. J Neurosurg. 2015 Jan; 122(1):78-81. Breshears JD, Ivan ME, Cotter JA, Bollen AW, Theodosopoulos PV, Berger MS. PMID: 25380115.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    36. Massive CNS monocytic infiltration at autopsy in an alemtuzumab-treated patient with NMO. Neurol Neuroimmunol Neuroinflamm. 2014 Oct; 1(3):e34. Gelfand JM, Cotter J, Klingman J, Huang EJ, Cree BA. PMID: 25340086; PMCID: PMC4204228.
      View in: PubMed   Mentions: 31     Fields:    
    37. Gangliogliomas of the optic pathway. J Clin Neurosci. 2014 Dec; 21(12):2244-9. Rolston JD, Han SJ, Cotter JA, El-Sayed IH, Aghi MK. PMID: 25043166.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    38. Isolated intracerebral light chain deposition disease: novel imaging and pathologic findings. Clin Imaging. 2014 Nov-Dec; 38(6):868-71. Yu JP, Wilson DM, Chang EF, Cotter J, Perry A, Mahindra A, Glastonbury CM. PMID: 25084689; PMCID: PMC4854295.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    With one click, see people who:

    Mentor Faculty

    Run Clinical Trials

    See more options in the Advanced Search tab

    Jennifer's Networks
    Concepts (153)
    Derived automatically from this person's publications.
    Explore
    _
    Co-Authors (68)
    People in Profiles who have published with this person.
    Explore
    _
    Similar People (60)
    People who share similar concepts with this person.
    Explore
    _
    Same Department
    Search Department
    _

    NIH Funding Acknowledgment: Important - All publications resulting from the utilization of SC CTSI resources are required to credit the SC CTSI grant by including the NIH funding acknowledgment and must comply with the NIH Public Access Policy.

    This site is running Profiles RNS version UCSF-v3.1.0-3-g1ef1264b on PROFILES-PWEB03. We use cookies to operate our website. We also use cookies to analyze our site’s performance and improve your experience on our site. For more information about how we use cookies, please see our Website Terms of Use.